Search Results (140)

Soil fumigation effectively mitigates replanting obstacles induced by intensive cultivation, yet its non-targeted biocidal effects can suppress beneficial microbial activity, potentially compromising agricultural sustainability. Microbial inoculation, as a strategy to supplement beneficial microorganisms, is often employed to restore soil microbial communities. However, in practice, commonly used exogenous microbial consortia exhibit poor adaptability in non-native environments, frequently resulting in limited efficacy. To address this limitation, we propose an ecological intervention based on the reintroduction of indigenous cultivable microorganisms: cultivable microbial communities were isolated from healthy adjacent soils and inoculated into fumigated soils affected by replanting obstacles. The experimental soil consisted of black soil under continuous cropping, collected from Northeast China. The three treatments were continuous cropping soil (control), fumigated continuous cropping soil and fumigated continuous cropping soil after inoculation of indigenous cultivable microorganisms. Using high-throughput sequencing and agronomic–chemical analyses, combined with cross-domain networks and procrustes analysis, we systematically assessed the ecological effects of this approach on microbial restoration and the alleviation of replanting obstacles. The results showed that indigenous cultivable microorganism inoculation significantly increased the richness of bacterial and fungal communities in fumigated soils within 21 days, extending microbial richness and diversity. Furthermore, inoculation accelerated the reconstruction of dominant microbial community structures, with the relative abundance of dominant species reaching up to 80%. Positive synergistic interactions between bacteria and fungi increased by approximately 10%, enhancing network stability. Key bacterial taxa, such as Paenibacillus and Mycobacterium, were significantly correlated with available potassium and phosphorus content, while Micromonospora, Massilia, and Flavisolibacter influenced plant fresh weight, total nitrogen, and potassium accumulation. Key fungal taxa, such as Cryptococcus and Phialemonium, were significantly associated with soil organic matter stability, maize photosynthetic efficiency, plant dry weight, and total phosphorus content. This study confirms the ecological adaptability and functionality of indigenous cultivable microorganisms in soil ecosystem restoration, offering a low-risk, highly effective localized intervention strategy for sustainable agriculture. Full article

Soil-borne diseases have become increasingly serious due to continuous planting. Soil fumigation may be inadequate because of the persistence of soil-borne pathogens on ginger seed rhizome. A combined strategy of soil fumigation and seed rhizome disinfection would be necessary to achieve synergistic control. In this study, the approach of soil fumigation with chloropicrin (CP) coupled with seed rhizome disinfection (Copper, Cu) was first adopted to evaluate the synergistic effects on soil physicochemical properties, enzyme activities and microbial communities, and therefore reveal mechanisms for soil microecological health and crop yield promotion. The results showed the comprehensive strategy could reduce NO₃⁻-N content, and the activities of soil enzymes, while increased NH₄⁺-N content, EX-Cu, and OXI-Cu content, which were positively correlated with ginger yield but negatively correlated with soil-borne pathogens and plant mortality. On the other hand, there was a reduction in bacterial diversity and richness, which was positively correlated with the abundance of soil-borne pathogens. Moreover, some beneficial soil microorganisms’ relative abundance (such as Firmicutes, Actinobacteria, Bacillus, and Sphingomonas.) was increased. The strategy decreased the abundance of Fusarium spp. and Phytophthora spp. by 49.41–90.07% and 43.34–89.21%, respectively. Compared with other treatments, the combination decreased the ginger mortality by 5.70–57.02% and increased the growth of ginger plants and yield by 3.58–139.96%, and 13.11–399.74%, respectively. This study highlights a prospect to promote ginger growth and yield by blocking the transmission of primary infection pathogens in ginger cultivation and improving soil ecological environment. Full article

In line with sustainability goals, biological alternatives to chemical fumigants are increasingly in demand to support intensive baby leaf lettuce cultivation systems. This study evaluated the combined effects of soil disinfestation strategies and foliar biostimulants on crop performance and nutritional quality. With the aim of evaluating the interactive effects of biofumigation and the application of Trichoderma spp., Ascophyllum nodosum extract, and vegetable protein hydrolysate, an experiment was conducted under controlled growing conditions, integrating microbial and foliar treatments on two lettuce cycles. Soil microbial load, plant biometric traits, ionic profiles, antioxidant activity, and polyphenolic compounds were quantified. Biofumigation induced a marked recovery of bacterial populations, while both soil treatments resulted in sustained fungal suppression and the absence of detectable Fusarium spp. Biofumigation consistently increased fresh and dry biomass, highlighting its dual sanitizing and fertilizing role. Foliar biostimulants, particularly vegetable protein hydrolysate, significantly enhanced dry matter accumulation, reduced nitrate concentration, and improved cation uptake. Antioxidant activity and phenolic metabolism were strongly stimulated by Trichoderma spp. and protein hydrolysate, with significant synergistic effects on key hydroxycinnamic acids and flavonoids. These findings indicate that integrating biological soil disinfestation with foliar biostimulation improves yield stability and nutritional quality, supporting a sustainable framework for high-value baby leaf lettuce production. Full article

To scientifically assess the effects of environmentally friendly fumigants on soil microbial communities, soils from a 7-year continuous cropping tomato greenhouse were studied, with unfumigated soil used as the control (CK). Rhizosphere soil samples treated with dazomet (DZ), metam sodium (MS) and calcium cyanamide (CC) were collected at the seedling recovery and fruiting stages. The influences of different fumigants and growth stages on soil microbial communities, tomato yield and soil-borne diseases were investigated. The results indicated that soil fumigation significantly decreased microbial community richness and diversity at the seedling recovery stage, which gradually recovered at the fruiting stage. The variation trends of microbial relative abundance at the phylum and genus levels differed among the treatments at both stages. At the phylum level, Actinobacteria and Proteobacteria were the dominant bacterial phyla, and Ascomycota was the dominant fungal phylum. Genus-level clustering revealed that the bacterial communities under MS and CC were similar to those under CK at the fruiting stage, whereas the fungal communities under all the fumigation treatments were significantly distinct from those under CK. Fumigation effectively inhibited pathogenic genera, including Amesia, Fusarium, Rhizopus and Ascobolus, at the seedling recovery stage, but some pathogens recovered at the fruiting stage. The relative abundance of Fusarium in the MS treatment increased to 8.25%. DZ treatment performed optimally: it increased beneficial genera such as Bacillus and Streptomyces at the seedling recovery stage, suppressed harmful genera, including Amesia and Fusarium, and further enriched Remersonia at the fruiting stage. Fumigation significantly improved tomato yield and reduced the incidence of soil-borne diseases. The yield of CC was the highest, at 35.41% greater than that of CK, but it was not significantly different from that of DZ in terms of cost. In conclusion, the DZ treatment had the best overall effect. Full article

Soil management is crucial for addressing soil-borne pathogens, weeds, and pests, ensuring sustainable crop productivity. Traditional chemical fumigants, such as methyl bromide, have been effective but pose serious environmental risks, including ozone depletion and reduced soil biodiversity. Consequently, attention has shifted toward more sustainable alternatives. Techniques like soil solarization, anaerobic soil disinfestation (ASD), biofumigation, and the use of biological control agents (BCAs) offer environmentally friendly options for managing soil-borne diseases. Steam and microwave disinfestation are also promising techniques; however, further development is required to improve their practical efficiency. Integrated management approaches, which combine multiple interventions, have proven particularly effective, offering flexibility and enhancing control through complementary techniques. Additionally, emerging technologies such as artificial intelligence and hyperspectral imaging provide new opportunities for real-time monitoring and decision-support to optimize the timing and targeting of pest management interventions. This review emphasizes the potential of sustainable soil pest control methods to reduce reliance on chemical fumigants, improve crop yield and quality, and support environmentally responsible farming practices. It also examines the challenges associated with scalability, cost, and variable effectiveness, while outlining the strengths, weaknesses, and mechanisms of each method. Further research on regional adaptation, technological integration, and long-term impacts is essential to fully optimize these innovative solutions for food security and sustainable agriculture. Full article

Allyl isothiocyanate (AITC) is effective as a bio-based fumigant in controlling soil-borne diseases; however, the selective pressure it exerts on soil microecology and evolutionary dynamics remains inadequately characterized. This study systematically investigated the remodeling effects of continuous AITC fumigation on soil microbial communities, functional genes, and functional strains by integrating metagenomic analysis and pure culture techniques. Results demonstrate that AITC drives directional selection from “sensitive” to “tolerant” microorganisms. Fungal communities exhibit greater cumulative damage than bacterial communities, with the proportion of significantly suppressed fungi increasing linearly from 9.3% at baseline to 35.7%. At the genus level, sensitive groups were predominantly enriched in pathogen-associated genera, e.g., Pseudomonas and Xanthomonas, whereas tolerant groups, represented by Bacillus and Streptomyces, maintained ecological dominance under continuous stress. Functionally, AITC induced differential evolution of functional gene repertoires. Nitrogen cycle genes (e.g., amoC) exhibited high negative sensitivity, with significant downregulation by 20%, whereas the TCA core module in the carbon cycle exhibited strong robustness. Virulence assays confirmed EC₅₀ values for tolerant beneficial bacteria (Bacillus spp.) (>40 mg·L⁻¹) were significantly higher than those for pathogens (1.3–7.9 mg/L). This study established a microbial “sensitive-tolerant” response framework under AITC stress, revealing the core potential of endogenous tolerant strains for the precise ecological restoration of fumigated soils. Full article

Biofumigation was originally proposed as an alternative to toxic fumigants for the treatment of agricultural soils, owing to the biocidal effect of isothiocyanates (ITCs) released by some plant species like Brassicaceae. However, biofumigation also presents limitations; thus, an advanced and viable alternative could be the use of controlled-release systems such as gelled polymer networks. In the present work, we explore the use of biocompatible hydrogels based on sodium alginate (ALG) and sodium carboxymethylcellulose (CMC), conveniently loaded with a Brassicaceae extract for this purpose. The extract was characterized by means of HPLC-MS, showing its high glucosinolate content, especially glucoraphanin, a secondary metabolite produced by several species of this family. The physicochemical properties of the synthesized gels were investigated by means of differential scanning calorimetry (DSC), rheometry, and scanning electron microscopy (SEM), both in the presence and absence of the loaded extract. Loading and release kinetics (in water) were studied by means of HPLC-DAD, and the Weibull model was employed to interpret the results. It was found that both hydrogels can effectively confine the Brassicaceae extract’s active principle, slowly releasing it in an aqueous environment. Both systems possess excellent properties for real applications, with the CMC-based hydrogels being slightly preferable over the ALG ones due to their higher encapsulation efficiency, mechanical properties, and overall features. These systems are promising tools for combating harmful microorganisms due to the biocidal properties of glucosinolates, but their potential goes beyond their use in agriculture, as they could be applied as antifouling or antimicrobial agents in cultural heritage cleaning or other fields. Full article

An attempt was made to understand the interactive consequences of subjecting a rhizospheric microbial community of xTriticocereale (Triticale) to higher CO₂ levels and soil nitrogen addition in the short term in a tropical agro-ecosystem. Open-top chambers (OTCs) were used to grow the test crops for a single season under ambient CO₂ (AC) and elevated CO₂ (EC) along with two variable N dosages: recommended (N₀: 0.053 g N/kg of soil) and high (N₂: 0.107 g of N/kg of soil) levels. Variations in the composition of microbial communities and abundances were investigated using phospholipid fatty acid analysis (PLFA). A significantly (p < 0.001) increased microbial biomass content (MB) was observed under EC compared to AC, while the addition of N had a minor effect. A decreased fungi/bacteria (F/B) ratio (~38%) was observed with high N application in the CO₂ enrichment treatment. Bacteria were more abundant, while fungal abundance decreased under N₂ and EC. Gram (+ve) bacteria used these conditions to thrive under N₂ and EC, while Gram (−ve) bacteria declined. No significant effects on actinomycetes were noticed in any of the treatments. However, eukaryotes acquired more benefits and flourished in response to EC. Varied responses were noted for the Shannon diversity index (H’) under EC. Overall, (i) bacteria (Gram-positive) and eukaryotes dominated under EC and high N addition, while fungi decreased, and (ii) EC and high levels of N addition did not affect actinomycetes. Short-term exposure under the given conditions was found to alter the rhizospheric microbial community. However, multiple season studies are needed to elucidate whether these short-term responses are transient or continuous. Full article

Protecting the soil ecosystem’s functioning is one of the main goals of recent regulations of chemicals. It is important to take soil biodiversity into account when designing cropping systems and measuring their impacts. Our main objective was to evaluate the effects of an organic amendment on soil nematode biodiversity compared to two years of fumigation. The plot-trial was conducted on tomato and lettuce plants under greenhouse, and free-living nematodes were used as bio-indicators of soil health. Treatments included a soil fumigant (applied once or twice over time), water control, and an organic substance. Soil samplings were carried out to determine the Meloidogyne incognita reproduction factor and the soil nematode community analysis using soil biological indicators. Data showed that soil fumigation clearly made the soil increasingly dependent on chemicals. Furthermore, fumigants suppressed pests and pathogens as well as their natural antagonists, causing a lack of biodiversity. While soils treated with organic matter respond slowly to stressors, they are progressively more suppressive thanks to biodiversity enrichment. Nematodes have proven to be useful indicators of the soil biota in response to biotic or abiotic disturbances. Their species richness and functional diversity make them valid bioindicators of soil management impact. Full article

Recently, a new solarization method gained a great deal of attention thanks to various advantages in comparison with both the traditional one and soil fumigation (alternative soil treatment based on the use of chemical agents). This method implements traditional solarization by spraying a biodegradable black liquid over the soil surface before the application of a thermic film. This creates a thin black film that acts like a “black body”, significantly increasing soil temperatures at various depths. Thanks to higher temperatures, it is possible to eliminate most of the pathogens in shorter times compared to traditional solarization. In the present paper, the results of different trials carried out on green beans, Romanesco broccoli, and lettuce were reported. The aims of this work were to demonstrate the efficacy on soil borne pathogens, its lower impact on living soil fungal biodiversity and the agronomical performance of the new solarization method. All crops tested showed a significant yield increase when grown in soil treated with the innovative solarization method. Romanesco broccoli also exhibited improved inflorescence quality. Solarization had a positive impact on overall crop productivity: green beans showed a maximum yield increase of 165.3%, lettuce yields rose by 47.5%, and Romanesco broccoli yields were 111.5% higher compared to the non-solarized control. These results confirm that the new solarization method is more effective, as well as environmentally, economically, and socially sustainable compared to traditional methods. Full article

To study the effects of different microbial agents on the microbial community structure of continuously cropped strawberry soil after soil fumigation, seven treatments were applied: T1 (Trichoderma harzianum + Bacillus subtilis + actinomycetes), T2 (Trichoderma harzianum + Bacillus subtilis), T3 (Trichoderma harzianum + actinomycetes), T4 (CK) (water control), T5 (Bacillus subtilis), T6 (actinomycetes) and T7 (Trichoderma harzianum). A high-throughput sequencing platform (Illumina HiSeq 2500) was used to analyze the soil bacterial and fungal communities and their compositions. Compared with the T4 (CK) treatment, the application of microbial agents increased the richness and diversity of soil bacteria and fungi, and the effects of single microbial agents and compound microbial agents differed. The richness, diversity indices and population sizes of bacteria and fungi in the T6 treatment were the highest. The Chao1, observed species and Shannon indices of bacteria were 22.51%, 23.56% and 5.61% greater, respectively, than those of T4 (CK). The Chao1, observed species, Shannon and Simpson indices of fungi were 41.28%, 41.83%, 128.02% and 88.65% higher, respectively, than those of T4 (CK). At the genus level, the bacterial community compositions of T2 and T6 were the most similar, and the fungal community compositions of T1 and T5 were the most similar. Analysis of the genera in the dominant communities revealed that the application of microbial agents after dazomet fumigation increased the numbers and recovery rates of soil bacteria and fungi, especially the beneficial fungal genera, Lecanicillium, Cladosporium, Saccharomyces and Aspergillus. An investigation of strawberry growth and yield-related indicators revealed that the T6 treatment resulted in the lowest seedling mortality and the highest yield. In summary, adding microbial agents to soil with continuous cropping of strawberry after fumigation with dazomet is a scientifically sound and effective method for reconstructing the balance of the soil microbial flora and overcoming the obstacles associated with continuous cropping. In this study, the T6 (actinomycetes) treatment presented the best performance. Full article

Potato early dying (PED) disease complex is often called the Verticillium wilt of potato and is considered one of the most economically devastating diseases of potato worldwide. The severity of the disease greatly increases with the association of the soil-borne pathogens Verticillium dahliae and V. albo-atrum and the root lesion nematode (Pratylenchus sp.). Recently, an increase in wilt disease symptoms and a sharp decline in marketable tuber yield were observed in New Brunswick (NB), Canada. A survey of 71 fields, along with eight fumigated and eight non-fumigated fields, was carried out to determine and quantify nematodes and Verticillium in the soil. Techniques used included plate counts for Verticillium (CFU/g soil), real-time qPCR (RT-qPCR) for V. dahliae (cell/g soil), and nematode identification and counts (# of nematodes/kg of soil). The survey results of the 71 fields revealed that 55 fields had Verticillium sp. ranging from 2 to 66 CFU/g of soil by the plate method, and 68 fields had high V. dahliae ranging from 261 to 27,471 cell/g of soil by RT-qPCR method. All fields had high numbers of root lesion nematodes ranging from 560 to 14,240 nematodes/kg of soil. There was an uneven distribution of PED incidence in potato fields at various locations of NB. Fumigation with Chloropicrin significantly reduced the numbers of root lesion nematodes by 34.1–99.0%, Verticillium sp. CFU/g of soil by 50–100%, and V. dahliae cell/g soil by 38–91% in the eight fumigated fields. The management of the PED complex with various disease management products under field conditions was also studied in a field plot trial setup. The nematicide Velum applied in-furrow at the recommended label rate decreased the numbers of root lesion nematodes by up to 66% compared to other products. The combination of both Velum + Aprovia and the application of ammonium-lignosulfonate significantly reduced V. dahliae by 190.55% and 274.24%, respectively, compared to other products. The fungicide Aprovia applied in-furrow at the recommended rate for the management of Verticillium wilt significantly reduced Verticillium sp. CFU/g of soil in treated soil by 73.3% compared to Velum, Mustgrow, Senator PSPT, Vapam, ammonium-lignosulfonate, Nimitz, and the untreated control. Disease management products increased potato marketable yield by 27.38–97.74%. The results of this study suggest that the root lesion nematode and V. dahliae have a ubiquitous distribution in the fields cultivated with potatoes in NB. The co-infection of potato by both V. dahliae and the root lesion nematode can greatly increase the severity of PED. Fumigation with Chloropicrin significantly reduced the levels of root lesion nematodes and Verticillium in all fumigated fields. Management practices of PED using the fungicide Aprovia, the nematicide Velum, and a combination of both Velum + Aprovia had the greatest effect in reducing the population density of the root lesion nematode and Verticillium dahliae in soils of commercial potato fields in New Brunswick. Full article

Biofumigation is an eco-friendly agronomic technique that utilizes bioactive compounds from Brassica species to manage soil-borne pests. In our review, we explore it as a sustainable alternative to chemical fumigation, focusing on its potential for controlling wireworms (Coleoptera: Elateridae). By analyzing existing studies, we assess the efficacy of biofumigation using Brassica plants, with a detailed focus on Brassica juncea (L.) Czern. (Indian mustard) and Brassica carinata A. Braun (Ethiopian mustard), which are rich in glucosinolates (Glns). We also examine glucosinolate decomposition mechanisms, where enzymatic hydrolysis releases isothiocyanates (IsoTs) and other bioactive compounds with pesticidal properties. Our review synthesizes findings from laboratory bioassays, semi-field experiments, and long-term field trials to evaluate the impact of these biofumigants on wireworms, soil health, and broader pest management strategies. Additionally, we discuss how biofumigation may disrupt wireworm feeding behavior while improving soil structure and microbial activity. Despite its promise, several challenges may influence the effectiveness and adoption of biofumigation, including the variability in field efficacy, soil interactions, and barriers to large-scale adoption. We emphasize the need for future research to refine biofumigation applications, enhance IsoT stability, and integrate this method with other pest control strategies to ensure its sustainability in wireworm management. Full article

Considering the global competition to increase food productivity due to the increasing population growth, the use of chemical pesticides has become the quick solution, but by increasing awareness about the serious dangers of wasteful chemicals in various areas of life, it has become necessary to move immediately, albeit gradually, towards safe biological treatments. From this point of view, the use of biochar is one of the trends in reducing soil pollution with chemical pesticides. Therefore, the main objectives of this work are (i) to assess if the application of three pesticides based on imidacloprid, methyl thiophanate, and glyphosate has detectable adverse consequences on soil organisms’ activity and (ii) to evaluate if the addition of biochar modifies the effects of these chemicals. An agricultural soil was amended with different doses of biochar. The treated soil received realistic amounts of currently used pesticides. Samples were stored at 21 °C and 50% WHC (water holding capacity) for a period of 28 days under dark conditions. Oxygen consumption was measured for 12 consecutive hours after the addition of 2.5 g glucose kg⁻¹ as a stimulant for soil organisms. Biomass C was estimated from the difference between the amount of C in 0.5 M K₂SO₄ extracts of CHCl₃ fumigated soil and the extractable C in non-fumigated samples. Specific respiration was computed as the amount of O₂ consumed per unit of Biomass Carbon. The results of this work proved that the tested biochar could modulate the effects produced by the agrochemicals on soil biomass. Full article

This study investigates the uptake, translocation, and pathogen control efficacy of ethylicin in tomato plants using a combination of indoor root irrigation, spraying, and field root irrigation experiments. The results indicate that ethylicin shows dual-directional translocation in tomato plants. On the third day after foliar spraying, ethylicin was detected in the roots at a concentration of 2.93 mg/kg, indicating downward movement. On the third day after root irrigation, ethylicin was detected in the leaves at a concentration of 3.44 mg/kg, confirming upward movement. In the field experiments, ethylicin was absorbed and transported to the upper leaves within six hours of root irrigation at a concentration of 3.85 mg/kg for a single-agent ethylicin and 5.87 mg/kg for an ethylicin–oligosaccharin compound. These results indicate that oligosaccharins enhance the absorption of ethylicin. Ethylicin residue dissipated by the fifth day. No ethylicin was detected in the untreated controls. Root irrigation during the growing period showed an effective reduction of Fusarium spp. and Phytophthora spp. populations in the soil and control of soil-borne diseases. These findings provide theoretical support for the efficient application of ethylicin in the field. Full article