Search Results (328)

Since the onset of industrialization, the safety of arable land has become a pressing global concern, with soil salinization emerging as a critical threat to agricultural productivity and food security. To address this challenge, the cultivation of economically valuable salt-tolerant plants has been proposed as a viable strategy. In the study, we investigated the physiological and molecular responses of Lycium ruthenicum Murr. to varying NaCl concentrations. Results revealed a concentration-dependent dual effect: low NaCl levels significantly promoted seed germination, while high concentrations exerted strong inhibitory effects. To elucidate the mechanisms underlying these divergent responses, a combined analysis of metabolomics and transcriptomics was applied to identify key metabolic pathways and genes. Notably, salt stress enhanced photosynthetic efficiency through coordinated modulation of ribulose 5-phosphate and erythrose-4-phosphate levels, coupled with the upregulation of critical genes encoding RPIA (Ribose 5-phosphate isomerase A) and RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase). Under low salt stress, L. ruthenicum maintained intact cellular membrane structures and minimized oxidative damage, thereby supporting germination and early growth. In contrast, high salinity severely disrupted PS I (Photosynthesis system I) functionality, blocking energy flow into this pathway while simultaneously inducing membrane lipid peroxidation and triggering pronounced cellular degradation. This ultimately suppressed seed germination rates and impaired root elongation. These findings suggested a mechanistic framework for understanding L. ruthenicum adaptation under salt stress and pointed out a new way for breeding salt-tolerant crops and understanding the mechanism. Full article

This study investigated the impact of nitrogen (N) fertilization on the yield and grain filling (GF) characteristics of two conventional japonica rice varieties with distinct panicle types: Yangchan 3501 (large-panicle: spikelets per panicle $> 150$) and Nangeng 46 (medium-panicle: $100 <$ spikelets per panicle $< 150$). Field experiments were conducted over two growing seasons (2022–2023) with three N application rates (T1: 225 kg ha⁻¹, T2: 270 kg ha⁻¹, T3: 315 kg ha⁻¹). Key measurements included tiller dynamics, panicle composition, GF parameters modeled using the Richards equation, and enzyme activities related to nitrogen metabolism (Fd-GOGAT, NR) and carbohydrate transport (α-amylase, SPS). Results showed that the yield increased with higher N levels for both varieties, with Yangchan 3501 achieving higher yields primarily through increased grains per panicle (15.65% rise under T3 vs. T1), while Nangeng 46 relied on panicle number (8.83% increase under T3 vs. T1). Nitrogen application enhanced Fd-GOGAT and NR activities, prolonging photosynthesis and improving GF rates, particularly in the inferior grains of Yangchan 3501 during middle and late stages. However, a high N reduced seed-setting rates and 1000-grain weight, with larger panicle types exhibiting a greater sensitivity to N-induced changes in branch structure and assimilate allocation. This study highlights that optimizing N management can improve nitrogen-metabolism enzyme activity and GF efficiency, especially in large-panicle rice, while medium-panicle types require higher N inputs to maximize panicle number. These findings provide actionable insights for achieving high yields and efficient nutrient use in conventional rice cultivation. Full article

Seed germination is a critical phase in the plant lifecycle of Camellia oleifera (oil tea), directly influencing seedling establishment and crop reproduction. In this study, we examined transcriptomic and physiological changes across five defined germination stages (G0–G4), from radicle dormancy to cotyledon emergence. Using RNA sequencing (RNA-seq), we assembled 169,652 unigenes and identified differentially expressed genes (DEGs) at each stage compared to G0, increasing from 1708 in G1 to 10,250 in G4. Functional enrichment analysis revealed upregulation of genes associated with cell wall organization, glucan metabolism, and Photosystem II assembly. Key genes involved in cell wall remodeling, including cellulose synthase (CESA), phenylalanine ammonia-lyase (PAL), 4-coumarate-CoA ligase (4CL), caffeoyl-CoA O-methyltransferase (COMT), and peroxidase (POD) showed progressive activation during germination. A Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed dynamic regulation of phenylpropanoid and flavonoid biosynthesis, photosynthesis, carbohydrate metabolism, and hormone signaling pathways. Transcription factors such as indole-3-acetic acid (IAA), ABA-responsive element binding factor (ABF), and basic helix–loop–helix (bHLH) were upregulated, suggesting hormone-mediated regulation of dormancy release and seedling development. Physiologically, cytokinin (CTK) and IAA levels peaked in G4, antioxidant enzyme activities were highest in G2, and starch content increased toward later stages. These findings provide new insights into the molecular mechanisms underlying seed germination in C. oleifera and identify candidate genes relevant to rootstock breeding and nursery propagation. Full article

Moringa (Moringa oleifera Lam.) is widely recognised as a multipurpose crop suitable for human and animal consumption, medicinal, and industrial purposes, making it attractive for introduction into new ranges. Its extracts have been found to have beneficial impacts on various crop species and biological activity against multiple weeds, making their use in agriculture promising. However, concerns have also been raised about moringa’s potential to negatively impact the growth and development of other cultivated and non-cultivated plant species, especially in areas where it has been introduced outside its native range. To understand the positive and negative interactions between moringa and other plants, it is essential to investigate its allelopathic potential. Allelopathy is a biological activity by which one plant species produces and releases chemical compounds that influence the reproduction, growth, survival, or behaviour of other plants with either beneficial or detrimental effects on the receiver. Plants produce and release allelochemicals by leaching, volatilisation, or through root exudation. These biochemical compounds can affect critical biological processes such as seed germination, root and shoot elongation, photosynthesis, enzymatic activities, and hormonal balance in neighboring plants. Therefore, allelopathy is an important driver of plant composition and ecological interactions in an ecosystem. This review explores the positive and negative allelopathic effects of moringa extracts on other plant species, which may help to inform decisions regarding its introduction into new biogeographical regions and incorporation into existing farming systems, as well as the use of moringa plant extracts in agriculture. Full article

Salt stress is a major constraint to seed germination and early seedling growth in rice, affecting crop establishment and productivity. To understand the mechanisms underlying salt tolerance, we investigated two rice varieties with contrasting responses as follows: salt-tolerant sea rice 86 (SR86) and salt-sensitive P559. Germination assays under increasing NaCl concentrations (50–300 mM) revealed that 100 mM NaCl induced clear phenotypic divergence. SR86 maintained bud growth and showed enhanced root elongation under moderate salinity, while P559 exhibited significant growth inhibition. Transcriptomic profiling of buds and roots under 100 mM NaCl identified over 3724 differentially expressed genes (DEGs), with SR86 showing greater transcriptional plasticity, particularly in roots. Gene ontology enrichment revealed tissue- and genotype-specific responses. Buds showed enrichment in photosynthesis-related and redox-regulating pathways, while roots emphasized ion transport, hormonal signaling, and oxidative stress regulation. SR86 specifically activated genes related to photosystem function, DNA repair, and transmembrane ion transport, while P559 showed activation of oxidative stress-related and abscisic acid (ABA)-regulated pathways. Hormonal profiling supported transcriptomic findings as follows: both varieties showed increased gibberellin 3 (GA3) and gibberellin 4 (GA4) levels under salt stress. SR86 showed elevated auxin (IAA) and reduced jasmonic acid (JA), whereas P559 maintained stable IAA and JA levels. Ethylene precursor and salicylic acid levels declined in both varieties. ABA levels rose slightly but not significantly. These findings suggest that SR86’s superior salt tolerance results from rapid growth, robust transcriptional reprogramming, and coordinated hormonal responses. This study offers key insights into early-stage salt stress adaptation and identifies molecular targets for improving stress resilience in rice. Full article

There is still a lack of knowledge about the photosynthetic activity of semi-leafless peas and the most important factors determining pea productivity during the growing season. The aim of the study was to evaluate and compare the photosynthetic parameters of three semi-leafless pea varieties in different nutritional backgrounds at different growth stages and to evaluate the relationship between photosynthetic indicators and pea (Pisum sativum L.) seed yield. The test involved three semi-leafless pea varieties, one of which was a new variety, and five NPK fertilization treatments were used, as follows: (1) without fertilizers—NPK 0:0:0, (2) without N fertilizers NPK 0:40:80, (3) NPK 30:40:80, (4) NPK 60:40:80, and (5) NPK 60:80:160. Photosynthetic indicators were assessed three times during the growing season. It was found that the physiological characteristics of peas differed significantly between cultivars and between growing seasons. The most intensive photosynthesis occurred in the middle of pea flowering and slowed down at the end of this stage. According to the photosynthetic characteristic’s values (A, gs, Ci), the varieties were arranged in the following descending order: Ieva DS, Simona, Respect. The application of the highest NPK fertilizer rates in most cases resulted in the highest photosynthesis rate, which, compared to the control, increased by 22.8–72.3%. Meteorological conditions in most cases had a significant relationship with physiological indicators. Full article

Hioredoxins are small proteins crucial for maintaining cellular redox balance and are involved in various biological processes, including growth, photosynthesis, development, and stress responses. This study aims to conduct a genome-wide analysis of the typical Thioredoxin (TRX) gene family in hexaploid Camellia oleifera and explore the role of the CoTRX25 gene in flowering. Through bioinformatics approaches, we identified 27 typical TRX gene family members in the C. oleifera genome and analyzed their phylogenetic relationships, gene structures, conserved motifs, and chromosomal distributions. Transcriptomic analysis across different tissues was performed to determine the expression patterns of these genes. Additionally, the CoTRX25 gene was cloned and heterologously overexpressed in Arabidopsis thaliana to investigate its functional role in flowering. The 27 TRX genes were mainly located on 11 chromosomes, with multiple gene duplication events identified, indicating that gene duplication has played a significant role in the expansion of the TRX family. Transcriptomic analysis revealed that most typical TRX genes are highly expressed in embryos, suggesting their potential importance in seed development. Overexpression of CoTRX25 in A. thaliana led to delayed flowering, implying that this gene may be involved in flowering regulation. This study provides a theoretical basis for understanding the functions of typical TRX genes in C. oleifera growth and development, particularly highlighting the role of CoTRX25 in flowering regulation. Full article

Soybean [Glycine max (L.) Merr.] is a globally significant crop that provides essential meal protein and vegetable oil for human consumption. The protein content in soybean seeds is a critical factor that affects nutrition regarding human dietary needs as well as livestock feed. Therefore, identifying the key genes that affect the soybean seed protein content is one of the major goals in soybean research. To identify candidate genes and related pathways involved in soybean seed storage protein during seed development, an RNA-seq analysis was conducted in two soybean varieties that differ in protein content. A series of pathways related to seed protein metabolism, including “Photosynthesis”, “TCA cycle”, and “Starch and sucrose metabolism” pathways, were identified through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. Seven candidate genes exhibiting two different gene regulation patterns were identified, six of which are directly related to the seed storage protein pathway, and one of which is related to the carbon binding pathway. An integrated analysis of transcriptomic and candidate gene expression trend suggested that 40 days after flowering (DAF) might be a crucial period for seed protein accumulation in soybean. Through a Weighted Gene Co-expression Network Analysis (WGCNA), two modules and two novel hub genes were found, which may be highly correlated with seed protein development. These findings might be valuable for a complete understanding of the genetic basis of seed protein content and lay a theoretical foundation for future gene functional identification and breeding efforts in soybean. Full article

Background: During the germination of soybean seeds, many biochemical metabolic reactions become extremely active, resulting in a series of physiological and biochemical activities, and the seeds being rich in nutrients. Studying the network and key genes that regulate the nutritional content of bean sprouts is particularly important. Methods: In this study, the nutrient contents of Dongnong 254 and Heze small beans were measured when the bean sprouts were 1 cm, 3 cm, 5 cm and 7 cm long, and transcriptome sequencing was performed. Results: Clustering and principal component analysis (PCA) revealed that the samples could be divided into three groups. The differences between Dongnong 254 and Heze small bean samples with sprout lengths of 5 cm and 7 cm were greater than those between materials. Through differential expression analysis, 18,472 differentially expressed genes (DEGs) in the material included 1816 unique DEGs, and a total of six clusters with statistical significance were identified, which were enriched in pathways related to photosynthesis and sugar metabolism. The 6938 DEGs among the materials included 1044 unique DEGs, and a total of nine statistically significant clusters were identified, which were mainly annotated in pathways related to photosynthesis, hormones and flavonoids. Three specific modules that were significantly related to the nutritional content of bean sprouts were identified via WGCNA. The connectivity and functional annotation of genes within the modules were calculated, and nine candidate genes were found, nine of which encoded transcription factors (Glyma.16G071900 (WD40), Glyma.17G172400 (bHLH), Glyma.18G148000 (AP2) and Glyma.01G003000 (MYB)). Conclusions: These research results provide a theoretical basis for an in-depth understanding of the molecular mechanisms of soybean sprout development and nutritional components and provide new genetic resources for the study of nutritional components in soybean sprouts. Full article

Soil compaction is a well-known harmful process for germination and seedling growth. Studies about compaction in mining tailings have been neglected despite being essential for the reforestation of impacted areas. This work evaluated the effects of compaction of iron mining tailings on the seedling emergence, early growth, and photosynthesis of Schinus terebinthifolia Raddi, a tolerant species with potential for reforestation. Experiments were implemented in a greenhouse where seeds of S. terebinthifolia were sown in iron mining tailings with four compaction treatments: (1) an uncompacted dry tailing, (2) uncompacted moistened tailing, (3) compacted dry tailing, and (4) compacted moistened tailing. Penetration resistance, seedling emergence, emergence speed index, seedling biometry, and photochemical traits were evaluated. Compacted moistened tailings showed the highest penetration resistance and uncompacted dry tailings the lowest. Other treatments showed intermediate means. The compacted moistened tailings produced the lowest seedling emergence rate and emergence speed index, and these parameters showed the highest means at uncompacted dry tailings with other treatments showing intermediate means. The compaction did not affect the seedling’s biometric parameters, with a similar growth among all treatments. S. terebinthifolia seedlings showed improved growth parameters during the experimental period, evidencing the potential of the species for the reforestation of impacted areas by iron mining tailings. Full article

Aeroponic plant cultivation is a novel technology explored for its potential in indoor farming. In this study, we evaluated the effects of seed treatments with cold plasma on growth, physiological processes, and biochemical parameters in two lettuce cultivars—green variety ‘Perl Gem’ and red variety ‘Cervanek’ cultivated in an aeroponic system for 45 days. Seeds were treated with low-pressure air plasma for 3 min (further denoted as LCP3) or atmospheric dielectric barrier discharge (DBD plasma) for 3 and 5 min (referred to as DBD3 and DBD5 groups). We estimated the effects of seed treatments on parameters of seedling growth, photosynthetic efficiency, amounts of photosynthetic pigments, anthocyanins, total phenolic compounds (TPC), and antioxidant activity in leaves. Despite the observed effects on germination and early growth, seed treatments did not affect biomass gain or head/root ratio in both lettuce cultivars. Seed treatments increased the photosynthetic performance index and amounts of photosynthetic pigments in ‘Pearl Gem’ but not ‘Cervanek’ leaves. Seed treatments enhanced the content of protective phenolic compounds and antioxidant activity in ‘Pearl Gem’, and anthocyanin content in ‘Cervanek’ leaves, indicating potential to improve the nutritional value of the edible part of lettuce cultivated in an aeroponic system. Full article

In line with the latest challenges, agriculture has many options to protect against stress conditions. Seed-priming treatment was applied to winter wheat genotype AG Hurrem with Dr. Green seed-priming fertilizer, which is a commonly used seed fertilizer containing macro- and microelements. Genome-wide transcriptomic analysis was performed to examine the effects of treatments. In seed-primed plants, defense response pathways such as purine and thiamine metabolism, glutathione pathway, and phenylpropanoid biosynthesis were activated. At the same time, photosynthesis and some cellular respiration processes were downregulated and suppressed. Furthermore, in samples of plants previously exposed to priming and subsequently to drought stress, biochemical pathways activated during seed priming showed positive modulation, thus confirming the long-term traces of the priming effects of previous treatments and their repeated inducibility in the genome, i.e., the presumed existence of stress memory. The in silico analyses were also supported by laboratory antioxidant enzyme activity measurements. The priming technique and the preventive approach that can be offered with it may be a promising option for developing sustainable agricultural production in the future. Full article

Salt stress poses a significant threat to crop growth. While brassinolide (BR) has been shown to alleviate its adverse effects and modulate plant development, the precise mechanism underlying BR-induced salt tolerance in rice remains unclear. In this study, the Chaoyouqianhao and Huanghuazhan rice varieties were employed to investigate the effects of BR seed soaking on the seedling phenotype, physiology, transcriptome, and metabolome under salt stress. The results demonstrated that BR treatment significantly enhanced rice plant height, root length, biomass, and antioxidant enzyme activities, while reducing leaf membrane damage, promoting ion homeostasis, and improving the photosynthetic capacity and salt tolerance. The transcriptome analysis revealed that BR regulated the expression of 1042 and 826 genes linked to antioxidant activity, ion homeostasis, photosynthesis, and lipid metabolism under salt stress. These included genes involved in Na⁺ efflux (OsNCED2, OsHKT2;1, and OsHKT1;1), photosynthetic electron transport (OsFd5 and OsFdC1), photosystem II (OsPsbR1, OsPsbR2, and OsPsbP), and CO₂ fixation. The metabolomic analysis identified 91 and 57 metabolite alterations induced by BR, primarily linked to amino acid, flavonoid, and lipid metabolism, with notable increases in antioxidant metabolites such as lignanoside, isorhamnetin, and L-glutamic acid. The integrated analysis highlighted the pivotal roles of 12-OPDA in α-linolenic acid metabolism and genes related to lipid metabolism, JA metabolism, and JA signal transduction in BR-mediated salt tolerance. Full article

Seaweeds and their derived products have long been valued in organic agriculture, serving roles in biofertilizers, biostimulants, and soil conditioners due to their rich content of bioactive compounds. With increasing concerns over the negative impacts of synthetic agrochemicals on food security and environmental health, seaweeds offer a sustainable alternative for improving soil fertility and crop productivity. This review synthesizes recent findings on the use of seaweeds to enhance soil physicochemical properties, stimulate beneficial microbial activity, and improve nutrient availability. Furthermore, it highlights how seaweed applications can mitigate various abiotic stresses, such as droughts, salinity, and nutrient deficiency, by enhancing antioxidant defenses and promoting physiological and biochemical resilience in plants. Key agronomic benefits include improved seed germination, root development, photosynthesis, biomass accumulation, and yield performance. By acting as natural soil amendments, seaweeds support sustainable soil management and contribute to long-term agricultural resilience. This review emphasizes the urgent need for standardized application strategies and integrated research to unlock the full potential of seaweed-based solutions in sustainable farming systems. Full article

The post-flowering stage is critical for plant yield and seed quality. This can be influenced by the photoperiod; however, the underlying mechanisms are not clear. Arabidopsis thaliana was selected as the experimental material to test this phenomenon. Different photoperiod treatments were implemented during the post-flowering stage to comprehensively examine the effects of photoperiod on physiological and phenotypic characteristics. This work aims to explore the photoperiod measurement mechanisms that control post-flowering growth and development. Our results showed the following: (1) During the post-flowering stage, the photoperiod had a significant impact on both vegetative and reproductive growth. (2) Photoperiod measurement mechanisms can be categorized into absolute and photosynthetic photoperiods. These mechanisms exert distinct effects. (3) Absolute photoperiod regulated the cytokinin to auxin ratio, thereby controlling the number and length of branches and the number of siliques. Extending the absolute photoperiod had a preferential promoting effect. (4) Photosynthetic photoperiod affected duration of photosynthesis. This process regulated the formation and accumulation of photosynthetic products. Consequently, it influenced the biomass and efficiency of siliques. Extending the photosynthetic photoperiod had a positive effect. This study demonstrates that plants distinguish between photoperiodic signals and energy effects to independently control post-flowering development and growth. Full article