Search Results (3,412)

Automotive Noise, Vibration, and Harshness (NVH) has emerged as a critical interdisciplinary field influencing vehicle performance, passenger comfort, brand perception, and regulatory compliance. This thematic literature review synthesizes key research trends, methodological approaches, and technological developments shaping contemporary NVH studies. Drawing on 255 scholarly and industry sources, the review identifies five dominant themes: (1) sources and characterization of noise and vibration in internal combustion, hybrid, and electric vehicles; (2) advanced modeling and simulation techniques—including finite element analysis, statistical energy analysis, and machine learning–based prediction models; (3) materials, components, and structural optimization strategies for NVH mitigation; (4) the rapidly evolving landscape of electric and autonomous vehicle NVH; and (5) emerging active noise and vibration control technologies and data-driven diagnostics. The analysis highlights a definite shift toward holistic, data-driven, and multi-physics approaches, driven by lightweighting imperatives, widespread electrification, and increasingly stringent occupant comfort expectations. Key gaps in current research—including the need for unified evaluation metrics, real-time in-vehicle NVH monitoring, closer integration of subjective psychoacoustic perception with objective physical measurement, and validated simulation workflows for novel EV architectures—are identified and discussed. This review provides a consolidated and expanded framework for understanding contemporary NVH research directions and articulates opportunities for transformative innovation in next-generation vehicle development. Full article

Iron overload disrupts cellular homeostasis and drives ferroptosis through dysregulated iron metabolism. Non-coding RNAs (ncRNAs) are considered as key regulators of various biological functions and targets for a new generation of RNA therapeutics and biomarkers. However, few studies have investigated the regulatory roles of ncRNAs, particularly competitive endogenous RNAs (ceRNAs) in iron overload. This study performed whole-transcriptome sequencing to characterize the ceRNA network in ferric ammonium citrate (FAC)-induced iron-overloaded HT-1080 fibrosarcoma cells. A total of 208 differentially expressed mRNAs, 83 lncRNAs, and 170 circRNAs (q < 0.05) were identified, with hierarchical clustering revealing distinct expression patterns between control and iron-treated groups. KEGG enrichment implicated vitamin B6 metabolism (q < 0.001) and lysine degradation (q < 0.001) as key disrupted pathways. ceRNA network was conducted and further demonstrated lncRNA/circRNA-mediated regulation of ferroptosis genes via shared miRNA response elements. Notably, LINC-PINT-232 was implicated in the regulation of both ferritin heavy chain (FTH) and sequestosome 1 (SQSTM1), two ferroptosis-associated mRNAs. FTH upregulation mitigates iron toxicity through ferroxidase activity, while SQSTM1 modulates lipid peroxidation in ferroptosis. These findings provide a preliminary transcriptomic landscape for hypothesis generation regarding ncRNA-mediated regulatory mechanisms in iron overload-induced ferroptosis and offer a computational foundation for future functional and therapeutic investigations. Full article

Major infrastructure investments alter accessibility and urban development patterns, yet their impact on housing prices varies significantly across regions. The prevailing interpretation attributes this heterogeneity to supply differences or regulatory constraints, treating land use regulations as exogenous variables. Nevertheless, even two regions with a nominally similar regulatory framework may produce substantially different outcomes in the housing market, depending on the effectiveness of rule implementation. This paper argues that this approach overlooks a critical variable: the ability of regional authorities to coordinate, regulate, permit, and implement spatial development in a predictable and timely manner. In line with this, a conceptual framework is developed, grounded in the literature on spatial and multi-level governance, in which regional institutional capacity is proposed as a potential mediator of capitalization around project milestones (announcement, funding, construction, operation), rather than as a backdrop. This capacity shapes outcomes through three interrelated dimensions: the responsiveness of supply, which depends on administrative capacity and regulatory consistency; the coherence of governance across jurisdictions within functional urban areas; and the management of land value through land value capture instruments. From this framework, testable propositions are derived regarding the intensity, timing, and spatial distribution of price effects. The study does not empirically estimate changes in housing prices, nor does it test the propositions put forward. Instead, it develops the conceptual framework and organizes the spatial and institutional units of observation required for a subsequent empirical test. The framework is specified spatially through Section A, Line 4 of the Athens Metro to organize the project’s spatial units, administrative jurisdictions, land uses, and milestones for future analysis. The contribution is threefold: conceptual, as it elevates regional institutional capacity from a contextual to an explanatory variable; theoretical, in that it bridges urban economics with the governance literature; and policy-relevant, since it repositions the reform of regional governance as a constituent element of housing policy and as a factor that may shape sustainable spatial development outcomes. Full article

Aim: The aim of this study was to correlate single-nucleotide polymorphisms (SNPs) in the FTO and MC4R genes with body composition (BC) in populations with various levels of physical activity, and to investigate associations of SREBF1 methylation with the level of physical activity (PA) and BC. Methods: Fifty-six participants aged 18–65 years old with no underlying medical conditions were included in the study and were classified into sedentary/light PA (SLPA), moderate PA (MPA) and vigorous PA (VPA) groups using the International PA questionnaire (IPAQ). Anthropometric measures such as age, gender, body mass index (BMI) and body fat percentage (BFP) were recorded at the time of recruitment. Venous blood samples were collected during participant recruitment and DNA was extracted. Genotyping assays were performed for SNPs in FTO (rs9939609) and MC4R (rs17782313) using Taqman^® RT qPCR and TaqMan Genotyper software 1.7.1. Methylation analysis assay for CpG sites in the SREBF1 gene was performed on 56 samples using PyroMark^® Q48 Autoprep (Qiagen,Venlo, Netherlands). The results were statistically analysed to identify any associations between FTO/MC4R genotypes and the level of PA, and between SREBF1 methylation status and the level of PA. This is the first study to investigate links between PA and quantitative methylation of SREBF1. Results: According to IPAQ guidance, the 56 participants were classified into SLPA n = 14, MPA n = 11 and VPA n = 31. The correlation analysis revealed that the FTO rs9939609 ‘A’ risk allele had a significant negative association with BFP in the VPA group (p = 0.0387); the MC4R rs17782313 ‘C’ risk allele had a significant positive association with BMI in the VPA group (p = 0.0256). In the SREBF1 pyrosequencing analysis, higher levels of methylation were observed in the VPA group (p = 0.07). Conclusions: We concluded that SNPs associated with obesity identified in FTO rs9939609 and MC4R rs17782313 could help to predict the molecular effects of PA. A high frequency of FTO risk variants in the cohort was observed and the VPA group could help maintain a healthy BFP. Full article

Background/Objectives: The transcription factor carbohydrate response element-binding protein (ChREBP) is a key glucose-sensing regulator that governs glucose and lipid metabolic homeostasis. However, its specific functions in skeletal muscle remain insufficiently clarified. The present study aimed to investigate the roles of ChREBP in skeletal muscle exercise capacity, energy metabolism, and adaptive remodeling, as well as muscle regeneration. Methods: We generated a skeletal muscle-specific ChREBP knockout mouse model, and assessed their exercise performance, energy metabolism, skeletal muscle fiber composition, and injury repair capacity. Additionally, hypoxia and high-fructose diet models were established to analyze the function of ChREBP in skeletal muscle adaptive remodeling. C2C12 myoblasts and primary muscle satellite cells were used to explore its effects on myogenic differentiation. Results: Genetic deletion of ChREBP induced no detectable alterations in myofiber composition, overall metabolic status, or muscle adaptive remodeling triggered by hypoxia and high-fructose diet. In vitro assays demonstrated that ChREBP overexpression facilitates C2C12 myogenic differentiation. Adeno-associated virus-mediated ChREBP overexpression enhanced histological markers of regeneration, including desmin-positive regenerative area and the cross-sectional area of newly formed myofibers after cardiotoxin-induced injury. Conclusions: Collectively, our experimental data indicate that ChREBP is largely dispensable for maintaining basal skeletal muscle homeostasis and stress-induced adaptive remodeling. Meanwhile, this study identifies a previously unrecognized regulatory role of ChREBP in the processes of skeletal muscle damage repair and post-injury regeneration. Full article

Pathogenesis-related (PR) proteins are crucial for plant defense against pathogen infection. However, the specific role of thaumatin-like proteins (TLPs), which comprise the PR-5 family, in plant immune responses has not been thoroughly investigated. Filipendula ulmaria is a medicinal plant with valuable pharmacological properties, including antimicrobial, anti-inflammatory, gastroprotective, immunomodulatory, and anticancer activities. The structure of the TLP family and its role in the immune system of meadowsweet have not been studied so far. The goal of this study was to analyze in detail the TLP gene family in meadowsweet and explore its response to fungal infection. In the meadowsweet genome, we identified 27 putative TLP genes, examined their structure and location on chromosomes, analyzed cis-regulatory elements in the promoter regions, predicted the structure and physicochemical characteristics of the encoded proteins, and performed a phylogenetic analysis. We also studied the differential expression of TLP genes under Bipolaris sorokiniana infection. Of six differentially expressed genes, three genes were up-regulated 48 h post-infection, suggesting their involvement in defense response to the fungus. The results obtained shed light on the role of the TLP gene family in the immune system of F. ulmaria and form the foundation for the creation of disease-resistant crops in agriculture and the development of bio-based antimicrobials in medicine. Full article

Transposable elements (TEs) are inserted into the genome and may change its properties; those occurring in or near regulatory regions may also alter gene expression. Given the challenges of detecting insertions in short-read sequencing, we analyzed structural variants in polar and brown bear genomes by a reciprocal alignment of one species’ sample genomes to a reference sequence of the other species, thus inferring TE insertion as the other genome’s “deletions”. With this approach, we detected short interspersed elements (SINEs) belonging to the CAN SINE family as dominant fixed TEs. We observed a non-random distribution of CAN SINE insertion positions near both protein- and RNA-coding genes, where TEs often overlap UTRs or occur in their vicinity. In contrast, SINEs avoid coding sequences, suggesting TE insertions that would disrupt such sequences are under purifying selection. We used black bear as an outgroup and determined that most of the CAN SINE insertions in the polar bear genome were derived, since they are not present in black or brown bear, while there is no dominant trend for CAN SINE insertions in brown bear relative to the outgroup. Many of the genes with UTRs affected by CAN SINEs are potentially relevant to the differences between the species (body shape, size, etc.) or to Arctic-adaptation phenotypes such as fur color, metabolism, and the immune system. This supports a model that CAN SINEs have contributed to regulatory evolution in bears and provides further evidence of such events across carnivore genomes in the animal kingdom. Full article

Fragaria vesca is a highly adaptable diploid model species. Although bHLH transcription factors (TFs) have been widely reported to regulate plant development and stress responses, the bHLH gene family has not been systematically characterized in Fragaria vesca. In this study, we conducted a genome-wide analysis of the bHLH TF family based on the Fragaria vesca v6 genome assembly. A total of 117 FvbHLH genes were identified, and promoter analysis revealed the presence of numerous cis-regulatory elements associated with plant development, hormone signaling, and stress responses. Transcriptome analysis showed that several FvbHLH genes were differentially expressed in leaves and stems under low-temperature stress. The low-temperature expression patterns of selected genes were further validated by reverse transcription quantitative PCR (RT-qPCR). Moreover, heterologous overexpression of FvbHLH86 in Arabidopsis thaliana enhanced cold tolerance by improving reactive oxygen species (ROS) scavenging capacity. These findings provide a valuable foundation for future functional studies of FvbHLH genes and contribute to a better understanding of the molecular mechanisms underlying cold stress responses in Fragaria vesca. Full article

P. massoniana is an important native economic and ecological tree species in southern China, where seasonal drought has emerged as a critical factor limiting its productivity. The SAUR gene family, recognized as core early auxin-responsive genes, plays a crucial role in balancing plant growth, development, and stress adaptation; however, research related to this family in conifers remains limited. Utilizing the chromosome-level genome of P. massoniana, this study identified 73 SAUR genes (PmSAUR1~73) through bioinformatics methods, systematically analyzing the physicochemical properties of the encoded proteins, chromosomal localization, phylogenetic relationships, gene structures, and cis-acting elements. Combined with transcriptome sequencing and molecular experiments, the drought stress response patterns of these genes were further elucidated. The results indicated that PmSAUR genes predominantly encode alkaline proteins, primarily localized in mitochondria and nuclei, with an uneven distribution across nine chromosomes, where tandem duplication serves as the primary mechanism driving family expansion. Phylogenetic analysis classified these genes into seven subfamilies, which include both conserved clades homologous to angiosperms and branches specific to P. massoniana. All members contain the Auxin_inducible conserved domain, with motif1 identified as the core essential motif. Promoter regions were enriched with MeJA (methyl jasmonate)-responsive (56%), ABA-responsive, and drought stress-related cis-elements. Under drought stress, 38 PmSAUR genes exhibited diverse temporal expression patterns. Four key genes (PmSAUR14, PmSAUR28, PmSAUR54, and PmSAUR73), which are localized in the nucleus and exhibit high expression specifically in male cones or roots, were identified. These genes exhibit an expression pattern consistent with an auxin-negative response (i.e., repressed by IAA and induced by drought) and display a distinctive response pattern characterized by drought-induced upregulation coupled with IAA-mediated downregulation. This mechanism may contribute to the drought adaptation strategies of P. massoniana, involving regulatory processes for aboveground reproduction and adaptation of the underground root system. This study represents the first effort to elucidate the evolutionary characteristics and drought response patterns of the SAUR gene family in P. massoniana, thereby addressing the existing research gap regarding the functions of SAUR genes in coniferous trees. Furthermore, it offers candidate gene resources and theoretical support for the molecular breeding of stress resistance in P. massoniana. In addition, two auxin-induced SAUR genes (PmSAUR22 and PmSAUR37) were identified as contrasting examples, but the main focus of this study is on the four auxin-repressed genes. Full article

This review examines the emerging role of machine learning (ML) in pharmaceutical chemistry, with emphasis on molecular design, synthetic feasibility, and structure–property–performance (SPP) relationships. By enabling pre-synthesis prediction of physicochemical properties, reaction pathways, and pharmaceutical performance, ML can reduce empirical trial-and-error experimentation and support more efficient exploration of chemical space. A structured narrative review design with PRISMA-aligned systematic search elements was used to evaluate 101 studies, enabling transparent literature identification, eligibility screening, and thematic synthesis across heterogeneous ML applications in pharmaceutical chemistry. This review examines structure–property relationships (SPRs) and property–performance relationships (PPRs), with emphasis on key pharmaceutical endpoints such as solubility, permeability, stability, dissolution, and bioavailability. An integrated SPP framework is proposed to connect molecular structure, intermediate properties, and final performance outcomes while incorporating retrosynthetic analysis and experimental feedback and closed-loop optimization. Recent frontier developments are also discussed, including molecular foundation models, multimodal language–graph models, diffusion-based molecular generation, E(3)-equivariant models, and MolMIM-like latent-space optimization. This review also covers co-folding and joint ligand–protein modeling, Boltz-2-like affinity prediction, AlphaFold 3-related biomolecular interaction modeling, and absorption, distribution, metabolism, excretion, and toxicity (ADMET) prediction. Key limitations include dataset leakage, benchmark inconsistency, assay variability, conformational and protonation-state effects, reproducibility challenges, regulatory constraints, and the gap between computational prediction and prospective experimental validation. Future progress is expected to depend on hybrid physics–ML models, uncertainty-aware prospective validation, autonomous experimentation, explainable artificial intelligence, and sustainability-aware molecular design. Overall, ML is evolving from a predictive tool into a chemically informed decision-support framework for rational, synthesis-aware, and experimentally validated pharmaceutical development. Full article

The current research evaluates the potential of incorporating shredded end-of-life tires as recycled aggregate in traditional earth blocks, proposing a sustainable alternative for the managing and valorization of this waste. Shredded tire particles at the upper granulometric limit, according to applicable regulations for this type of block, were used in various volume replacement percentages. The results reveal that the bulk density remains almost constant, increasing by 2.12% after 20% replacement, while the porosity increases progressively with reduced content, reaching a maximum of 17.63% for the same replacement. Although the mechanical properties decrease with higher replacement percentages, reaching 2.061 MPa with a 31.83% reduction in compressive strength and a 30.18% reduction in flexural strength compared to the control samples, these values still exceed regulatory requirements. In contrast, there is an optimization of thermal properties, with a minimum conductivity value of 0.66 W/m·K and improvements in erosion resistance, including reductions of up to 42.71%. Through Thermogravimetric Analysis and Optical Image Analysis tests, complementing the feasibility analysis, it is determined that this type of block is viable for masonry applications for light or non-structural loads. Likewise, the material exhibits significant improvements in erosion resistance and highlights its thermal behavior as a potential insulating element. However, polymer degradation when exposed to high temperatures limits its application due to the loss of mechanical stability and the potential risks associated with matrix degradation. Full article

TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) are plant-specific regulators involved in growth, development, and responses to abiotic stresses, yet their roles in halophytes remain largely unexplored. In this study, we performed a genome-wide identification of TCP family members in the extreme halophyte Salicornia europaea, uncovering 15 non-redundant genes (SeurTCPs) classified into PCF, CIN, and CYC/TB1 subfamilies. Gene structure and conserved motif analyses revealed that SeurTCPs are largely intronless and maintain the canonical TCP domain, while showing subfamily-specific variations in motif composition and secondary/tertiary structures. Promoter analysis identified abundant stress and hormone-responsive cis-elements, particularly ABRE and STRE, suggesting potential involvement in salt stress signaling. Protein–protein interaction network prediction highlighted CIN and PCF members as hub nodes, indicating central roles in growth and stress response regulation. Quantitative Real-Time Reverse Transcription Polymerase Chain Reaction (qRT-PCR) analysis showed that most SeurTCP genes were responsive to salinity treatment, although the extent of transcriptional variation differed among subfamilies. Collectively, our results indicate that SeurTCPs balance conserved structural functions with subfamily-specific regulatory roles, contributing to S. europaea adaptation to extreme saline environments. This study provides valuable candidate genes for elucidating plant salt tolerance mechanisms and for potential crop improvement. Full article

Alternative splicing (AS) is a major post-transcriptional regulatory mechanism that greatly expands transcriptomic and proteomic diversity in plants. Recent studies have demonstrated that AS dynamically regulates gene expression during plant development and under diverse environmental conditions through isoform-specific modulation of transcript stability, translation efficiency, protein localization, and signaling pathways. In this review, we summarize recent advances in understanding the roles of AS in plant development and abiotic stress responses. Mechanistically, splice site selection is regulated through coordinated interactions among cis-regulatory elements, RNA-binding proteins, RNA secondary structures, transcriptional kinetics, chromatin organization, and spliceosomal dynamics. AS plays critical roles in various developmental processes, including seed germination, vegetative growth, flowering transition, and senescence, while also contributing to plant adaptation to abiotic stresses such as osmotic, temperature, and oxidative stresses. Particular emphasis is placed on the diverse regulatory outcomes of AS, including isoform-specific protein functions, AS-coupled nonsense-mediated decay, transcript stability control, and context-dependent isoform switching. We further discuss the varying levels of experimental evidence supporting reported AS events, ranging from transcriptome-wide observations to genetically and biochemically validated isoform functions. Moreover, recent advances in long-read sequencing, single-cell transcriptomics, proteogenomics, and genome-engineering technologies are accelerating the functional characterization of splice isoforms and uncovering the complexity of AS-mediated regulatory networks. Collectively, these advances highlight AS as a central mechanism coordinating plant developmental plasticity and environmental adaptation. Full article

Tomatoes are globally significant crops worldwide. Understanding the molecular mechanisms underlying their growth, development, and stress responses is crucial to enhance crop productivity and resilience. The WUSCHEL-related homeobox (WOX) gene family is implicated in developmental processes and stress responses, yet its regulatory complexity in tomato remains underexplored. This study presents an integrative genome-wide analysis approach to characterize the WOX family in tomato. Ten SlWOX genes were identified and phylogenetically classified into three clades, WUS, intermediate and ancient, underscoring their evolutionary relationships. Structural analysis revealed significant variability in gene structure even within the same clade, indicating potential diversity in functional roles. Conserved domains’ screening enables the detection of conserved motifs, including the homeodomain and WUS box. Cis-element analysis showed diverse regulatory elements across the SlWOXs, with a strong emphasis on elements involved in growth and development and stress response. Expression profiling across different organs and growth conditions including abiotic and biotic stresses revealed variability in SlWOXs’ expression patterns. Furthermore, several miRNAs were predicted to target the SlWOXs, emphasizing the existence of post-transcriptional regulation. Functional annotation and interactome analysis further revealed the key role of some SlWOXs, mainly SlWUS, SlWOX4 and SlWOX13, as central regulatory hubs. Collectively, these findings uncover the structural diversity, regulatory mechanisms and functional flexibility of the SlWOX gene family. It also highlights potential targets for improving tomato crop resilience and productivity, making it a significant contribution to plant biology and agriculture. Full article

FAR1/FHY3 transcription factors are key regulators of plant growth and development, but their identification and functions in strawberries (Fragaria × ananassa) remain largely unexplored. In this study, 47 FaFAR1/FHY3 genes in cultivated strawberries were systematically identified, which were categorized into six subfamilies and randomly distributed across 15 chromosomes, with segmental duplication as the main driver of the expansion of this gene family. Integration of phylogenetic relationships, gene structure, and conserved motif composition uncovered distinct divergences among the subfamilies. A cis-acting element analysis of promoters and gene expression profiles showed that these genes responded to various abiotic and biotic stresses, phytohormones, and far-red light signals, with FaFAR1-7 and FaFAR1-44 strongly responding to multiple stresses, including temperature, drought, and pathogen infection. Additionally, FaFAR1-12 and FaFAR1-18 exhibited positive correlations with anthocyanin accumulation and the expression of key anthocyanin biosynthesis genes during fruit development. Dual-luciferase reporter assays further confirmed that FaFAR1-12 and FaFAR1-18 significantly activated the promoters of key structural genes related to anthocyanin biosynthesis, indicating that these two TFs exert vital regulatory functions in anthocyanin accumulation during strawberry fruit development. This study comprehensively identifies and characterizes the FaFAR1/FHY3 genes in cultivated strawberries, laying a foundation for their functional analysis and for screening out the key regulatory genes for strawberry fruit quality improvement. Full article