Search Results (26)

The Tumen River, which delineates the border between China, North Korea, and Russia, is a vital river in Northeast Asia. Understanding its current fish diversity holds significant scientific value for aquatic ecological protection. Therefore, traditional and eDNA sampling were conducted from 2022 to 2023. Integrating the historical literature with our field collection results reveals that the Tumen River has a total of 64 native fish species, of which 51 species have been surveyed in the wild. The fish composition is mainly dominated by cold-water species, with a high proportion of these being rare, endangered, and nationally protected. eDNA surveys are crucial complements in boundary rivers where traditional methods are not feasible. The results indicated that α diversity values were highest in the Hunchunhe River, attributed to the favorable natural geographical conditions and effective conservation efforts. Recently, the fish diversity in the Tumen River has been disrupted, primarily reflected in the absence of migratory species such as Oncorhynchus gorbuscha and Pseudaspius hakonensis. The study suggests that establishing nature reserves, preventing and controlling alien species, and strengthening international cooperation are key to protect fish diversity. Full article

Background: Leuciscus merzbacheri is a rare and endangered fish in Xinjiang, China. As a representative species of the fauna in the Junggar Basin, it is of high economic and scientific value. The genetic data are still limited, and the mitochondrial genomic characteristics remain unexplored. Methods: A high-throughput sequencing method was used to obtain the complete mitogenome of L. merzbacheri. Results: The full length of the circular DNA was 16,609 bp, and it consisted of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs and 2 non-coding regions. The overall nucleotide compositions of both the mitogenome and PCGs showed an obvious AT preference with percentages of 54.20% and 53.60%, respectively. Three commonly used amino acids were Leu (16.43%), Ala (8.95%) and Thr (7.85%) in turn. All tRNAs could form the typical clover structures excluding tRNA-Ser ^AGY. The presumed secondary structures of two rRNAs contained several stem-loop domains, and the structure of 12S rRNA seemed to be more stable than that of 16S rRNA. Extended termination sequence regions (ETASs), central conserved regions (CSB-F, CSB-E and CSB-D), and conserved sequence regions (CSB-1, CSB-2 and CSB-3) were identified in the control region. The phylogenetic tree showed that L. merzbacheri was recovered with strong supports as a sister to the other members of the genus. The location in the outermost branch implied that it might be a relatively ancient species among its congeners. Conclusions: This study would complement the genetic data on L. merzbacheri and contribute to a better understanding of molecular evolution in Leuciscus as well. Full article

As the largest lake in South China, Wanlv Lake is also an important drinking water source for Guangdong and Hong Kong and is responsible for water supplying of more than 40 million people in the Guangdong-Hong Kong-Macao Greater Bay Area. The study of fish diversity in Wanlv Lake can help us to effectively understand the changes and states of its aquatic ecosystem and provide scientific basis for natural ecological protection, biodiversity, sustainable use and scientific management of fishery resources. However, research on the lake’s fish is scarce. The high throughput environmental DNA metabarcoding technology (eDNA technology) of the mitochondrial 12S rRNA gene sequence was herein used to conduct a preliminary exploration of Wanlv Lake fish diversity. A total of 10 sampling sites were set up to monitor fish diversity and analyze the composition and richness of the species. The results revealed a total of 83 genera in 42 families and 17 orders of fish in the lake, with the highest proportion found in Cypriniformes (38 species), accounting for 45.24% of the total. Five alien species and eight rare and endangered species were also detected. The proportion of invasive species was 5.95%, and the combined proportion of rare and endangered species was 9.52%. The results indicated that Wanlv Lake serves as an important drinking water source, and overall, the condition of fish is satisfactory. However, proactive measures should be implemented to control the overpopulation of invasive species, as their unchecked proliferation may lead to a decline in species abundance, particularly among endangered species. This was the first overall assessment report on fish of the Wanlv Lake via 12S rRNA; the results herein lay a foundation for water quality assessment of Wanlv Lake as a drinking water source. Full article

This article is devoted to the further development of a viable technology for low-temperature cryopreservation of reproductive cells of sturgeon fish using acoustic–mechanical fields and intelligent control of the freezing process. Before vitrification begins, the piezoactuator acts on a mixture of cryoprotectant and reproductive cells. This promotes intensive mixing of the cryoprotector and its diffusion through the cell membrane. When vitrification is carried out directly, a phase transition phenomenon is observed, accompanied by crystal formation. This article presents a new mathematical model describing this process as developed by the authors. The corresponding boundary conditions are formulated. Numerical experiments were carried out using the finite element method. It has been established that during vitrification without the use of a cryoprotectant, a sharp temperature jump is observed at the front of the crystalline formation boundary. The use of a cryoprotectant leads to a slowdown in the process of crystal formation, that is, to a weakening of the effect of one of the most important cryoprotective factors. The comparison with full-scale experiments showed qualitative agreement with the experimental results, which indicates the adequacy of the proposed model. The results obtained can be used in the future during the vitrification process and the evaluation of the quality of cryofreezing. The application of a new methodological approach to methods of long-term preservation at low temperatures of the genetic and reproductive material of hydrobionts using acoustic and mechanical effects and an intelligent control module opens up great opportunities for the creation of new cost-effective biotechnologies that make it possible to make the transition to a new type of aquatic farms, increase the stability of aquaculture, in general, to make environmental protection measures to save rare and endangered species more effective. Full article

As an ancient and endangered species unique to the Yangtze River in China, the wild population of the Dabry’s sturgeon has become scarce. Due to the long time till the first sexual maturity of Dabry’s sturgeon, the population of artificially bred Dabry’s sturgeon recovered slowly. As a member of the tachykinin family, TAC1 has been reported to have a variety of functions in mammals such as pain control, smooth muscle contraction and reproductive cycle regulation, but the function of Tac1 in fish has been rarely reported. In this study, we synthesized two tac1 gene products, Substance P (SP) and neurokinin A (NKA), and further verified the effect of two tac1 gene products on the secretion of related hormones in the pituitary of Dabry’s Sturgeon by intraperitoneal injection and co-culture of primary cells. Expression studies revealed that the newly cloned tac1 were mainly distributed in the hypothalamus and pituitary tissue of the brain. In prepubertal Dabry’s sturgeon, this study showed that the two gonadotropins’ mRNA levels in pituitary tissue can be significantly increased by SP and NKA through intraperitoneal injection, and the LH protein level in serum was also increased. Further study showed that both NKA and SP could promote the two gonadotropins’ mRNA expression in pituitary cells of Dabry’s sturgeon. In addition, we explored the optimal dose and time of SP and NKA on pituitary cells is 24 h and over 10 nM. These results, as a whole, suggested that tac1 gene products play an important role in gonadotropin release and gonadal development in prepubertal Dabry’s sturgeon. Full article

In order to study the community of fishery resources, five sampling sections were set up in the lower Yellow River from 2019 to 2022 to investigate the diversity of fishery resources. A total of 54 fish species were identified in the survey, belonging to 9 orders, 19 families, and 48 genera. The number of species reached its highest level since the Integrated Water Regulation of the Lower Yellow River in 1999. The original rare and endangered fish species in the lower reaches of the Yellow River, such as Coilia nasus, Rhinogobio nasutus, and Pseudobagrus ussuriensis, have reappeared in the lower reaches. The population and abundance of main economic fish and common small-sized fish in the lower reaches of the Yellow River have increased. These signs all indicate that, and the fishery resources are recovering slowly in the lower Yellow River. By comparing the fish resources of various investigation sections, it was found that there are differences in fish diversity: the closer to the estuarine waters, the higher the variety of fish in the Yellow River at the upper level of the taxonomic category. However, that section of the lower Yellow River where species evenness, species diversity, and community structure of fishery resources were most stable was the confluence of Dongping Lake into the Yellow River, which has the most significant number of fish species, the smallest Λ⁺ value, and the most extensive G-F index. The above results indicate that Dongping Lake, as the only lake connected to the lower reaches of the Yellow River, plays an essential role in replenishing fish resources in the lower reaches of the Yellow River. Full article

Environmental DNA (eDNA) analysis is a biological survey method that has drawn much attention in recent years. However, the results of eDNA analysis and capture surveys often do not completely match, and the validity of the eDNA analysis needs to be verified. Verification of eDNA metabarcoding was conducted in a river in Fukushima Prefecture, Japan, in comparison with capture survey data. Most of the captured species were detected, and 13 uncaptured lineages (two genera and 11 species) were detected in the eDNAs. Some rare species detected in the eDNAs were also identified, including exotic eels and an endangered yet out-of-range bitterling fish. To confirm the validity of the exotic Anguilla spp. detected in eDNAs, mitochondrial Cytb sequencing was performed on captured eel specimens. All eel specimens were sequenced as the native Anguilla japonica, indicating a small biomass of the exotic species difficult to capture. Our results clearly indicated the eDNA analysis as a powerful tool for detecting possible habitats of rare fish species without disturbance to the natural environment. Full article

The responses of rare plants to environmental stressors will determine their potential to adapt to a rapidly changing climate. We used a common garden approach to evaluate how six populations of the annual San Diego thornmint (Acanthomintha ilicifolia Lamiaceae; listed as endangered in the state of California and as threatened by the US Fish and Wildlife Service) from across the species range respond in terms of growth (biomass, height, and width) and reproduction (seed production, floral production, and next generation seed viability) to experimental differences in water availability. We found a significant irrigation-by-population interaction on the aboveground growth, wherein the differences in the magnitude and direction of treatment did not correlate directly with climate variables in natural populations. With respect to reproduction, the low-irrigation treatment produced more seeds per plant, more reproductive individuals, and a larger proportion of viable seed in most, but not all, populations. The seed production and the effect of irrigation on seed production correlated positively with rainfall at wild source populations. These results suggest that Acanthomintha ilicifolia responds to water limitation by creating more and higher-quality seed, and that plants locally adapted to a higher annual rainfall show a greater plasticity to differences in water availability than plants adapted to a lower annual rainfall, a finding that can inform the in situ demographic management and ex situ collection strategy for Acanthomintha ilicifolia and other rare California annuals. Full article

The giant freshwater whipray is a large-bodied stingray species that is listed as endangered across its known range from India through Southeast Asia. However, little is known about the species’ ecology, biology, and conservation status. We reviewed all available literature, articles, and reports on the species found through database and internet searches in order to consolidate and update information on the giant freshwater whipray. We found that remarkably little research has been done, and most existing information on the species is derived from fisher catch reports. Whiprays of 300 kg or more have been reported in most countries where it occurs. The available evidence suggests that this species is endangered across its range by numerous threats, including fishing, bycatch, bottom trawls, pollution, and habitat destruction and fragmentation. Various reports indicate declines in population size, genetic diversity, and body size. Relatively stable populations may persist in the Maeklong River, Thailand, the Mekong River in Cambodia, and insular Southeast Asia. More work is needed to understand the species’ spatio-temporal distribution, reproductive behavior, migration patterns, and general ecological and biological characteristics in order to inform effective management and conservation plans. Due to difficulties in sampling this rare species and monitoring fisher catches, partnership and collaboration with all stakeholders, including local fishers, government officials, and researchers, is essential to produce conservation gains for the giant freshwater whipray. Full article

Environmental DNA (eDNA) techniques have emerged as a cost-effective and non-invasive strategy for monitoring the distribution of endangered aquatic species. Despite their numerous advantages, operational uncertainty at each step of the process represents a significant challenge that can impact the reliability of results. Hence, the optimization of the eDNA analytic protocol is of utmost importance. In this study, the rare and endangered fish species Sichuan taimen was chosen as the target species to evaluate the concordance between different approaches (tissue, pond, and field water samples) for eDNA detection. The results showed that membrane filtration, collection of a 2-L water sample, and utilization of the DNeasy Tissue and Blood DNA extraction kit were suitable for the analysis of DNA in water samples. Furthermore, the mtDNA D-loop region demonstrated potential as a specific molecular marker for the precise identification of Sichuan taimen. Our results indicated that TaqMan fluorescence PCR can serve as the optimal detection method for reliable identification of target DNA even at extremely low concentrations in the field. This study established an optimized eDNA analysis protocol for Sichuan taimen detection, which will provide the basis for future resource investigations aimed at protection of this endangered aquatic species. Full article

We used acoustic telemetry to assess site fidelity, movement patterns, and habitat use within the lower Maeklong River, Thailand, by 22 giant freshwater whipray Urogymnus polylepis. This study is the first of its kind for this rare, endangered species, and it begins to fill critical information gaps about its ecology and life history. Study animals were tagged subcutaneously in the dorsal area with acoustic transmitters and tracked for 12 months using a fixed array of eight receivers. Receivers were positioned within an 18 rkm section of the Maeklong, starting approximately 4 rkm upstream from the mouth. We calculated individual residency indices, tracked longitudinal movements, and assessed annual and seasonal patterns of site use. We also investigated spatial use patterns, diel activity patterns, and relationships of temperature and site fidelity. We detected 86% of our tagged whiprays, 53% of which were detected for the majority of the study period. Whiprays exhibited high site fidelity across seasons. Individuals made long longitudinal movements within the site for much of the study period but seemed to remain closer to the estuary during the second half of the rainy season and early winter. All receivers had large numbers of detections, but upstream receivers were visited for longer time durations than downstream receivers. A receiver in the middle of the study area had the highest detection rate, but low detection durations, suggesting that this receiver is in a migration corridor. A mix of immature and mature males and females was present in the site throughout the study period, suggesting that this area is not exclusively a breeding or nursery site. However, the high site fidelity suggests that this is an important aggregation site for the species. Effective conservation measures may include conservation zones and a shrimp reintroduction program upstream, ensuring fish passage through the middle of the site, and regulating traffic and pollution downstream. We found acoustic telemetry to be an effective study method and encourage its use to improve understanding of the giant freshwater whipray. Full article

Over the last 14 years, ichthyological and ecological parameters have been monitored in the Labudovo okno Ramsar site. This area is important for its biodiversity as it is home to many rare and endangered plants and animal species. A total of 3861 fish specimens were sampled and measured at six sampling sites four times during the sampling period. An analysis of biodiversity indexes, relative biomass (kg/ha), and relative annual production (kg/ha) was carried out to assess the effectiveness of existing conservation measures. The results obtained show a trend decline in biodiversity, relative biomass, and relative annual production. This indicates a biodiversity conservation problem that should be addressed through other mechanisms in addition to the principles of the Ramsar Convention. Full article

Siamese bat catfish (Oreoglanis siamensis Smith, 1993) has been listed as an endangered species, and its abundance has been severely declining due to habitat degradation and overfishing. To establish an appropriate management strategy, it is crucial to gain information about the distribution of this endangered species. As O. siamensis live under rocks in streams, detecting their presence is difficult. Recently, environmental DNA (eDNA)–based detection has been demonstrated to be a valid tool for monitoring rare species, such as O. siamensis. Therefore, this study developed an eDNA assay targeting a 160 bp fragment of the COI region to detect the presence of this species in its natural habitat. An amount of 300 mL of water samples (0.7 μm filtered) were collected from 15 sites in the Mae Klang sub-basin, where this fish species was visually detected at two locations. O. siamensis eDNA was detected at 12 of the 15 sites sampled with varying concentrations (0.71–20.27 copies/mL), including at the sites where this species was visually detected previously. The developed O. siamensis eDNA assay was shown to be effective for detecting the presence of this endangered species in the Klang Phat and Klang Rivers within the Doi Inthanon National Park. Full article

Food adulteration is one of the most serious problems regarding food safety and quality worldwide. Besides misleading consumers, it poses a considerable health risk associated with the potential non-labeled allergen content. Fish and fish products are one of the most expensive and widely traded commodities, which predisposes them to being adulterated. Among all fraud types, replacing high-quality or rare fish with a less valuable species predominates. Because fish differ in their allergen content, specifically the main one, parvalbumin, their replacement can endanger consumers. This underlines the need for reliable, robust control systems for fish species identification. Various methods may be used for the aforementioned purpose. DNA-based methods are favored due to the characteristics of the target molecule, DNA, which is heat resistant, and the fact that through its sequencing, several other traits, including the recognition of genetic modifications, can be determined. Thus, they are considered to be powerful tools for identifying cases of food fraud. In this review, the major DNA-based methods applicable for fish meat and product authentication and their commercial applications are discussed, the possibilities of detecting genetic modifications in fish are evaluated, and future trends are highlighted, emphasizing the need for comprehensive and regularly updated online database resources. Full article

Biodiversity assessment is important for evaluating community conservation status. The haor basin in Sylhet Division represents a transitional zone with high species availability, rare occurrences and endemism. As a result, this study aims to describe the haor-based freshwater fish composition, including habitat, trophic ecology, availability and conservation status. Semi-structured questionnaires were used to collect data on fish samples through focus group discussions, field surveys, and interviews with fisheries stakeholders on a monthly basis. We identified 188 morpho-species, of which 176 were finfish and 12 shellfish, distributed into 15 orders and 42 families where 29%, 42%, 15%, and 14% species were commonly available, moderately available, abundantly available, and rarely available, respectively. Cypriniformes was the dominant order in both total species and small indigenous species identified. Approximately 45.34% of species were riverine, 31.58% floodplain residents, 12.55% estuarine, 2.83% migratory, and 7.69% were exclusively hill stream residents. Carnivores and omnivores were the most dominant trophic groups. A total of 87.76% species were used as food, 12.23% as ornamental and 6.91% as sport fish. Approximately 50 species were threatened (7 critically endangered, 23 endangered and 20 vulnerable) at the national level, most of them belonging to Cypriniformes and Siluriformes. Based on endemism, 16 species were endemic of which Sygnathidae, Cobitidae, Olyridae, Cyprinidae and Balitoridae fell under the threatened category. Minimizing intense fishing efforts, banning indiscriminate fishing and destructive fishing gear, initiating fish sanctuaries and beel nurseries, and implementing eco-friendly modern fishing technology are suggested to conserve the threatened species. This study represents a guideline for assessing the availability and conservation of freshwater fish in the Sylhet belt and serves as a reference for decision-makers in order to allow for the sustainable exploitation of fisheries resources within an ecosystem-based framework. Full article