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13 pages, 16914 KB  
Article
Traversal by Touch: Tactile-Based Robotic Traversal with Artificial Skin in Complex Environments
by Adam Mazurick and Alex Ferworn
Sensors 2025, 25(21), 6569; https://doi.org/10.3390/s25216569 - 25 Oct 2025
Viewed by 296
Abstract
We evaluate tactile-first robotic traversal on the Department of Homeland Security (DHS) figure-8 mobility test using a two-way repeated-measures design across various algorithms (three tactile policies—M1 reactive, M2 terrain-weighted, M3 memory-augmented; a monocular camera baseline, CB-V; a tactile histogram baseline, T-VFH; and an [...] Read more.
We evaluate tactile-first robotic traversal on the Department of Homeland Security (DHS) figure-8 mobility test using a two-way repeated-measures design across various algorithms (three tactile policies—M1 reactive, M2 terrain-weighted, M3 memory-augmented; a monocular camera baseline, CB-V; a tactile histogram baseline, T-VFH; and an optional tactile-informed replanner, T-D* Lite) and lighting conditions (Indoor, Outdoor, and Dark). The platform is the custom-built Eleven robot—a quadruped integrating a joint-mounted tactile tentacle with a tip force-sensitive resistor (FSR; Walfront 9snmyvxw25, China; 0–10 kg range, ≈0.1 N resolution @ 83 Hz) and a woven Galvorn carbon-nanotube (CNT) yarn for proprioceptive bend sensing. Control and sensing are fully wireless via an ESP32-S3, Arduino Nano 33 BLE, Raspberry Pi 400, and a mini VESC controller. Across 660 trials, the tactile stack maintained ∼21 ms (p50) policy latency and mid-80% success across all lighting conditions, including total darkness. The memory-augmented tactile policy (M3) exhibited consistent robustness relative to the camera baseline (CB-V), trailing by only ≈3–4% in Indoor and ≈13–16% in Outdoor and Dark conditions. Pre-specified, two one-sided tests (TOSTs) confirmed no speed equivalence in any M3↔CB-V comparison. Unlike vision-based approaches, tactile-first traversal is invariant to illumination and texture—an essential capability for navigation in darkness, smoke, or texture-poor, confined environments. Overall, these results show that a tactile-first, memory-augmented control stack achieves lighting-independent traversal on DHS benchmarks while maintaining competitive latency and success, trading modest speed for robustness and sensing independence. Full article
(This article belongs to the Special Issue Intelligent Robots: Control and Sensing)
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20 pages, 2126 KB  
Article
Genomics-Assisted Improvement in Blast Resistance and Low Cadmium Accumulation in an Elite Rice Variety
by Zhi Xu, Zhizhou He, Yanglan He, Hailong Chen, Jihua Cheng, Changrong Ye, Zhouwei Li, Le Li, Hexing Yin, Lijia Zheng, Yuntian Wu, Bingchuan Tian and Junhua Peng
Agronomy 2025, 15(9), 2130; https://doi.org/10.3390/agronomy15092130 - 5 Sep 2025
Viewed by 570
Abstract
Xiangwanxian 13 (XWX13), an elite fragrant indica rice, is highly susceptible to rice blast and accumulates cadmium (Cd) in grain above the food safety limit in Cd-contaminated paddies, severely constraining its commercial use. Despite these shortcomings, the variety is widely grown for its [...] Read more.
Xiangwanxian 13 (XWX13), an elite fragrant indica rice, is highly susceptible to rice blast and accumulates cadmium (Cd) in grain above the food safety limit in Cd-contaminated paddies, severely constraining its commercial use. Despite these shortcomings, the variety is widely grown for its high yield and superior grain quality. To overcome these limitations, we conducted marker-assisted backcrossing (MABC) complemented by genome-wide background selection. Four major genes, namely Pi1, Pi2, OsHMA3, and OsNramp5, were precisely introduced into XWX13. Two preferable BC3MF5 improved lines iXWX13-1 (stacking Pi1 + Pi2 + OsHMA3) and iXWX13-2 (stacking Pi1 + Pi2 + OsNramp5) were obtained with genomic background recovery rates of 94.44% and 94.63%, evaluated by using the RICE 1K SNP array, respectively. Seedling resistance spectrum assays demonstrated more than a 97% blast resistance rate against 39 Magnaporthe oryzae isolates, and both lines showed enhanced leaf and panicle neck blast resistance in natural nurseries. Multi-site field trials revealed grain Cd concentrations of 0.009–0.077 mg kg−1 in iXWX13-2, 90.98–98.87% lower than those in XWX13. Importantly, yield, major agronomic traits, and grain quality remained indistinguishable from the original variety. This study provides the first demonstration that MABC coupled with SNP array background selection can simultaneously enhance blast resistance and reduce grain Cd in XWX13 without yield or quality penalties, offering a robust strategy for pyramiding multiple desirable genes into elite cultivars. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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12 pages, 1513 KB  
Article
Impedance Spectroscopy for Interface Trap Effects Evaluation in Dopant-Free Silicon Solar Cells
by Ilaria Matacena, Laura Lancellotti, Eugenia Bobeico, Iurie Usatii, Marco della Noce, Elena Santoro, Pietro Scognamiglio, Lucia V. Mercaldo, Paola Delli Veneri and Santolo Daliento
Energies 2025, 18(17), 4558; https://doi.org/10.3390/en18174558 - 28 Aug 2025
Viewed by 576
Abstract
This work investigates the effect of interface traps on the impedance spectra of dopant-free silicon solar cells. The studied device consists of a crystalline silicon absorber with an a-Si:H/MoOx/ITO stack as the front passivating hole-collecting contact and an a-Si:H/LiF/Al stack as the rear [...] Read more.
This work investigates the effect of interface traps on the impedance spectra of dopant-free silicon solar cells. The studied device consists of a crystalline silicon absorber with an a-Si:H/MoOx/ITO stack as the front passivating hole-collecting contact and an a-Si:H/LiF/Al stack as the rear passivating electron-collecting contact. Experimental measurements, including illuminated current–voltage (I–V) characteristics and impedance spectroscopy, were performed on the fabricated devices and after a soft annealing treatment. The annealed cells exhibit an increased open-circuit voltage and a larger Nyquist plot radius. To interpret these results, a numerical model was developed in a TCAD environment. Simulations reveal that traps located at the p/i interface (MoOx/i-a-Si:H) significantly affect the impedance spectra, with higher trap concentrations leading to smaller Nyquist plot circumferences. The numerical impedance curves were aligned to the experimental data, enabling extraction of the interfacial traps concentration. The results highlight the sensitivity of impedance spectroscopy to interfacial quality and confirm that the performance improvement after soft annealing is primarily due to reduced defect density at the MoOx/i-a-Si:H interface. Full article
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32 pages, 2548 KB  
Review
Deciphering the Molecular Interplay Between RXLR-Encoded Avr Genes and NLRs During Phytophthora infestans Infection in Potato: A Comprehensive Review
by Bicko S. Juma, Olga A. Oxholm, Isaac K. Abuley, Chris K. Sørensen and Kim H. Hebelstrup
Int. J. Mol. Sci. 2025, 26(17), 8153; https://doi.org/10.3390/ijms26178153 - 22 Aug 2025
Viewed by 979
Abstract
Potato (Solanum tuberosum L.) is a globally significant staple crop that faces constant threats from Phytophthora infestans, the causative agent of late blight (LB). The battle between Phytophthora infestans and its host is driven by the molecular interplay of RXLR-encoded avirulence [...] Read more.
Potato (Solanum tuberosum L.) is a globally significant staple crop that faces constant threats from Phytophthora infestans, the causative agent of late blight (LB). The battle between Phytophthora infestans and its host is driven by the molecular interplay of RXLR-encoded avirulence (PiAvr) effectors and nucleotide-binding leucine-rich repeat (NLR) immune receptors in potato. This review provides a comprehensive analysis of the structural characteristics, functional diversity, and evolutionary dynamics of RXLR effectors and the mechanisms by which NLR receptors recognize and respond to them. The study elaborates on both direct and indirect modes of effector recognition by NLRs, highlighting the gene-for-gene interactions that underlie resistance. Additionally, we discuss the molecular strategies employed by P. infestans to evade host immunity, including effector polymorphism, truncation, and transcriptional regulation. Advances in structural biology, functional genomics, and computational modeling have provided valuable insights into effector–receptor interactions, paving the way for innovative resistance breeding strategies. We also discuss the latest approaches to engineering durable resistance, including gene stacking, synthetic NLRs, and CRISPR-based modifications. Understanding these molecular mechanisms is critical for developing resistant potato cultivars and mitigating the devastating effects of LB. This review aims to bridge current knowledge gaps and guide future research efforts in plant immunity and disease management. Full article
(This article belongs to the Special Issue Plant–Microbe Interactions: 2nd Edition)
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30 pages, 4011 KB  
Article
Multitarget Design of Steroidal Inhibitors Against Hormone-Dependent Breast Cancer: An Integrated In Silico Approach
by Juan Rodríguez-Macías, Oscar Saurith-Coronell, Carlos Vargas-Echeverria, Daniel Insuasty Delgado, Edgar A. Márquez Brazón, Ricardo Gutiérrez De Aguas, José R. Mora, José L. Paz and Yovanni Marrero-Ponce
Int. J. Mol. Sci. 2025, 26(15), 7477; https://doi.org/10.3390/ijms26157477 - 2 Aug 2025
Viewed by 976
Abstract
Hormone-dependent breast cancer, particularly in its treatment-resistant forms, remains a significant therapeutic challenge. In this study, we applied a fully computational strategy to design steroid-based compounds capable of simultaneously targeting three key receptors involved in disease progression: progesterone receptor (PR), estrogen receptor alpha [...] Read more.
Hormone-dependent breast cancer, particularly in its treatment-resistant forms, remains a significant therapeutic challenge. In this study, we applied a fully computational strategy to design steroid-based compounds capable of simultaneously targeting three key receptors involved in disease progression: progesterone receptor (PR), estrogen receptor alpha (ER-α), and HER2. Using a robust 3D-QSAR model (R2 = 0.86; Q2_LOO = 0.86) built from 52 steroidal structures, we identified molecular features associated with high anticancer potential, specifically increased polarizability and reduced electronegativity. From a virtual library of 271 DFT-optimized analogs, 31 compounds were selected based on predicted potency (pIC50 > 7.0) and screened via molecular docking against PR (PDB 2W8Y), HER2 (PDB 7JXH), and ER-α (PDB 6VJD). Seven candidates showed strong binding affinities (ΔG ≤ −9 kcal/mol for at least two targets), with Estero-255 emerging as the most promising. This compound demonstrated excellent conformational stability, a robust hydrogen-bonding network, and consistent multitarget engagement. Molecular dynamics simulations over 100 nanoseconds confirmed the structural integrity of the top ligands, with low RMSD values, compact radii of gyration, and stable binding energy profiles. Key interactions included hydrophobic contacts, π–π stacking, halogen–π interactions, and classical hydrogen bonds with conserved residues across all three targets. These findings highlight Estero-255, alongside Estero-261 and Estero-264, as strong multitarget candidates for further development. By potentially disrupting the PI3K/AKT/mTOR signaling pathway, these compounds offer a promising strategy for overcoming resistance in hormone-driven breast cancer. Experimental validation, including cytotoxicity assays and ADME/Tox profiling, is recommended to confirm their therapeutic potential. Full article
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22 pages, 3409 KB  
Article
Short-Term Prediction Intervals for Photovoltaic Power via Multi-Level Analysis and Dual Dynamic Integration
by Kaiyang Kuang, Jingshan Zhang, Qifan Chen, Yan Zhou, Yan Yan, Litao Dai and Guanghu Wang
Electronics 2025, 14(15), 3068; https://doi.org/10.3390/electronics14153068 - 31 Jul 2025
Viewed by 417
Abstract
There is an obvious correlation between the photovoltaic (PV) output of different physical levels; that is, the overall power change trend of large-scale regional (high-level) stations can provide a reference for the prediction of the output of sub-regional (low-level) stations. The current PV [...] Read more.
There is an obvious correlation between the photovoltaic (PV) output of different physical levels; that is, the overall power change trend of large-scale regional (high-level) stations can provide a reference for the prediction of the output of sub-regional (low-level) stations. The current PV prediction methods have not deeply explored the multi-level PV power generation elements and have not considered the correlation between different levels, resulting in the inability to obtain potential information on PV power generation. Moreover, traditional probabilistic prediction models lack adaptability, which can lead to a decrease in prediction performance under different PV prediction scenarios. Therefore, a probabilistic prediction method for short-term PV power based on multi-level adaptive dynamic integration is proposed in this paper. Firstly, an analysis is conducted on the multi-level PV power stations together with the influence of the trend of high-level PV power generation on the forecast of low-level power generation. Then, the PV data are decomposed into multiple layers using the complete ensemble empirical mode decomposition with adaptive noise (CEEMDAN) and analyzed by combining fuzzy entropy (FE) and mutual information (MI). After that, a new multi-level model prediction method, namely, the improved dual dynamic adaptive stacked generalization (I-Stacking) ensemble learning model, is proposed to construct short-term PV power generation prediction models. Finally, an improved dynamic adaptive kernel density estimation (KDE) method for prediction errors is proposed, which optimizes the performance of the prediction intervals (PIs) through variable bandwidth. Through comparative experiments and analysis using traditional methods, the effectiveness of the proposed method is verified. Full article
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13 pages, 2414 KB  
Article
In Silico Characterization of Molecular Interactions of Aviation-Derived Pollutants with Human Proteins: Implications for Occupational and Public Health
by Chitra Narayanan and Yevgen Nazarenko
Atmosphere 2025, 16(8), 919; https://doi.org/10.3390/atmos16080919 - 29 Jul 2025
Viewed by 661
Abstract
Combustion of aviation jet fuel emits a complex mixture of pollutants linked to adverse health outcomes among airport personnel and nearby communities. While epidemiological studies showed the detrimental effects of aviation-derived air pollutants on human health, the molecular mechanisms of the interactions of [...] Read more.
Combustion of aviation jet fuel emits a complex mixture of pollutants linked to adverse health outcomes among airport personnel and nearby communities. While epidemiological studies showed the detrimental effects of aviation-derived air pollutants on human health, the molecular mechanisms of the interactions of these pollutants with cellular biomolecules like proteins that drive the adverse health effects remain poorly understood. In this study, we performed molecular docking simulations of 272 pollutant–protein complexes using AutoDock Vina 1.2.7 to characterize the binding strength of the pollutants with the selected proteins. We selected 34 aviation-derived pollutants that constitute three chemical categories of pollutants: volatile organic compounds (VOCs), polyaromatic hydrocarbons (PAHs), and organophosphate esters (OPEs). Each pollutant was docked to eight proteins that play critical roles in endocrine, metabolic, transport, and neurophysiological functions, where functional disruption is implicated in disease. The effect of binding of multiple pollutants was analyzed. Our results indicate that aliphatic and monoaromatic VOCs display low (<6 kcal/mol) binding affinities while PAHs and organophosphate esters exhibit strong (>7 kcal/mol) binding affinities. Furthermore, the binding strength of PAHs exhibits a positive correlation with the increasing number of aromatic rings in the pollutants, ranging from nearly 7 kcal/mol for two aromatic rings to more than 15 kcal/mol for five aromatic rings. Analysis of intermolecular interactions showed that these interactions are predominantly stabilized by hydrophobic, pi-stacking, and hydrogen bonding interactions. Simultaneous docking of multiple pollutants revealed the increased binding strength of the resulting complexes, highlighting the detrimental effect of exposure to pollutant mixtures found in ambient air near airports. We provide a priority list of pollutants that regulatory authorities can use to further develop targeted mitigation strategies to protect the vulnerable personnel and communities near airports. Full article
(This article belongs to the Section Air Quality and Health)
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29 pages, 6516 KB  
Article
Investigating the Inhibitory Effects of Paliperidone on RAGEs: Docking, DFT, MD Simulations, MMPBSA, MTT, Apoptosis, and Immunoblotting Studies
by Akash Pratap Singh, Shaban Ahmad, Ahona Roy, Khalid Raza and Hemant K. Gautam
Int. J. Mol. Sci. 2025, 26(3), 1060; https://doi.org/10.3390/ijms26031060 - 26 Jan 2025
Cited by 1 | Viewed by 1571
Abstract
Chronic diseases such as diabetes and cancer are the leading causes of mortality worldwide. Receptors for Advanced Glycation End products (RAGEs) are ubiquitous factors that catalyse Advanced Glycation End products (AGEs), proteins, and lipids that become glycated from sugar ingestion. RAGEs are cell [...] Read more.
Chronic diseases such as diabetes and cancer are the leading causes of mortality worldwide. Receptors for Advanced Glycation End products (RAGEs) are ubiquitous factors that catalyse Advanced Glycation End products (AGEs), proteins, and lipids that become glycated from sugar ingestion. RAGEs are cell surface receptor proteins and play a broad role in mediating the effects of AGEs on cells, contributing to modifying biological macromolecules like proteins and lipids, which can cause Reactive Oxygen Species (ROS) generation, inflammation, and cancer. We targeted RAGE inhibition analysis and screening of United States Food and Drug Administration (FDA) libraries through molecular docking studies that identified the four most suitable FDA compounds: Zytiga, Paliperidone, Targretin, and Irinotecan. We compared them with the control substrate, Carboxymethyllysine, which showed good binding interaction through hydrogen bonding, hydrophobic interactions, and π-stacking at active site residues of the target protein. Following a 100 ns simulation run, the docked complex revealed that the Root Mean Square Deviation (RMSD) values of two drugs, Irinotecan (1.3 ± 0.2 nm) and Paliperidone (1.2 ± 0.3 nm), were relatively stable. Subsequently, the Molecular Mechanics Poisson–Boltzmann Surface Area (MMPBSA) determined that the Paliperidone molecule had a high negative energy of −13.49 kcal/mol, and the Absorption, Distribution, Metabolism, and Excretion (ADME) properties were in control for use in the mentioned cases. We extended this with many in vitro studies, including an immunoblotting assay, which revealed that RAGEs with High Mobility Group Box 1 (HMGB1) showed higher expression, while RAGEs with Paliperidone showed lower expressions. Furthermore, cell proliferation assay and Apoptosis assay (Annexin-V/PI staining) results revealed that Paliperidone was an effective anti-glycation and anti-apoptotic drug—however, more extensive in vivo studies are needed before its use. Full article
(This article belongs to the Section Molecular Pharmacology)
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21 pages, 816 KB  
Article
An Integrated Stacking Ensemble Model for Natural Gas Purchase Prediction Incorporating Multiple Features
by Junjie Wang, Lei Jiang, Le Zhang, Yaqi Liu, Qihong Yu and Yuheng Bu
Appl. Sci. 2025, 15(2), 778; https://doi.org/10.3390/app15020778 - 14 Jan 2025
Viewed by 1156
Abstract
Accurate prediction of natural gas purchase volumes is crucial for both the economy and the environment. It not only facilitates the rational allocation of resources for companies but also helps to reduce operational costs. Although existing prediction methods have achieved some success in [...] Read more.
Accurate prediction of natural gas purchase volumes is crucial for both the economy and the environment. It not only facilitates the rational allocation of resources for companies but also helps to reduce operational costs. Although existing prediction methods have achieved some success in addressing the nonlinear relationships in natural gas purchases, there remains potential for further improvement. To address this issue, a stacking ensemble learning model was developed to enhance the ability to handle complex nonlinear problems. This model integrates diverse algorithms and incorporates weather factors, while regionalizing characteristics of natural gas usage, thereby achieving accurate forecasts of natural gas purchase volumes. We selected three distinctly different base models—Informer, multiple linear regression (MLR), and support vector regression (SVR)—for our research. By conducting four different feature combination experiments for each base model, including weather, time, regional, and usage features, we constructed 12 foundational models. Subsequently, we integrated these base models using a meta-learner to form the final stacking ensemble model. The experimental results indicate that the stacking ensemble model outperforms individual models across key metrics, including R2, MRE, and RMSE. Notably, the R2 values improved by 4–15% compared to the 12 base models. The model was subsequently applied to predict natural gas purchase volumes in Pi County, Chengdu, China. In November 2024, a side-by-side comparison of the predicted and actual data revealed a maximum error of just 5.39%. This exceptional accuracy effectively meets forecasting requirements, underscoring the model’s predictive strength in the energy sector. Full article
(This article belongs to the Special Issue Artificial Intelligence Applications in Industry)
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2223 KB  
Proceeding Paper
In Silico Assessment of Enaminone–Sulfanilamides as Potential Carbonic Anhydrase II Inhibitors: Molecular Docking and ADMET Prediction
by Yousra Ouafa Bouone, Abdeslem Bouzina, Rachida Mansouri and Nour-Eddine Aouf
Chem. Proc. 2024, 16(1), 117; https://doi.org/10.3390/ecsoc-28-20211 - 14 Nov 2024
Viewed by 362
Abstract
Carbonic anhydrases (CAs) are a group of zinc-containing enzymes involved in many physiological processes through their role in the maintenance of the equilibrium between bicarbonate and CO2 levels. Human carbonic anhydrases (hCAs) are recognized as important drug targets due to their major [...] Read more.
Carbonic anhydrases (CAs) are a group of zinc-containing enzymes involved in many physiological processes through their role in the maintenance of the equilibrium between bicarbonate and CO2 levels. Human carbonic anhydrases (hCAs) are recognized as important drug targets due to their major implication in the development of diseases including cancer. Sulfanilamide derivatives have been widely studied and have shown remarkable efficiency in inhibiting carbonic anhydrases, with the presence of SO2NH2 in their structure. Therefore, the sulfonamide moiety is considered as the leading scaffold in the search for new hCA inhibitors. Moreover, the introduction of an enaminone to sulfonamide-based CA inhibitors showed an enhancement of inhibitory activity. In this context, we were interested in the in silico investigation of benzenesulfonamide derivatives containing β-enaminone that were synthesized from dicarbonyl compounds and sulfanilamide under microwave irradiation. The in silico assessment includes a molecular docking simulation against hCA II (PDB: 2AW1). The docked ligands showed good docking score values (−8.099 and −7.053 kcal.mol−1), which indicates a good stability of the studied compounds within the active site. Further, significant interactions with the residues of the active site were observed, including metal coordination with Zn 262, an H-bond with Thr 199, and pi–pi stacking with the side chain of His94, which are considered as the key interactions for CA inhibition. A complementary in silico study that involved ADMET prediction was performed to learn more about the pharmacokinetic properties and the toxicity of the products in order to comprehend their ability to become drug-candidates. Full article
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18 pages, 3747 KB  
Article
On the Potential Energy Surface of the Pyrene Dimer
by Jiří Czernek and Jiří Brus
Int. J. Mol. Sci. 2024, 25(19), 10762; https://doi.org/10.3390/ijms251910762 - 6 Oct 2024
Viewed by 2000
Abstract
Knowledge of reliable geometries and associated intermolecular interaction energy (ΔE) values at key fragments of the potential energy surface (PES) in the gas phase is indispensable for the modeling of various properties of the pyrene dimer (PYD) and other important aggregate [...] Read more.
Knowledge of reliable geometries and associated intermolecular interaction energy (ΔE) values at key fragments of the potential energy surface (PES) in the gas phase is indispensable for the modeling of various properties of the pyrene dimer (PYD) and other important aggregate systems of a comparatively large size (ca. 50 atoms). The performance of the domain-based local pair natural orbital (DLPNO) variant of the coupled-cluster theory with singles, doubles and perturbative triples in the complete basis set limit [CCSD(T)/CBS] method for highly accurate predictions of the ΔE at a variety of regions of the PES was established for a representative set of pi-stacked dimers, which also includes the PYD. For geometries with the distance between stacked monomers close to a value of such a distance in the ΔE minimum structure, an excellent agreement between the canonical CCSD(T)/CBS results and their DLPNO counterparts was found. This finding enabled us to accurately characterize the lowest-lying configurations of the PYD, and the physical origin of their stabilization was thoroughly analyzed. The proposed DLPNO-CCSD(T)/CBS procedure should be applied with the aim of safely locating a global minimum of the PES and firmly establishing the pertaining ΔE of even larger dimers in studies of packing motifs of organic electronic devices and other novel materials. Full article
(This article belongs to the Special Issue Feature Papers in 'Physical Chemistry and Chemical Physics' 2024)
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13 pages, 1175 KB  
Article
Explainable Ensemble Learning Approaches for Predicting the Compression Index of Clays
by Qi Ge, Yijie Xia, Junwei Shu, Jin Li and Hongyue Sun
J. Mar. Sci. Eng. 2024, 12(10), 1701; https://doi.org/10.3390/jmse12101701 - 25 Sep 2024
Cited by 3 | Viewed by 1659
Abstract
Accurate prediction of the compression index (cc) is essential for geotechnical infrastructure design, especially in clay-rich coastal regions. Traditional methods for determining cc are often time-consuming and inconsistent due to regional variability. This study presents an explainable ensemble learning [...] Read more.
Accurate prediction of the compression index (cc) is essential for geotechnical infrastructure design, especially in clay-rich coastal regions. Traditional methods for determining cc are often time-consuming and inconsistent due to regional variability. This study presents an explainable ensemble learning framework for predicting the cc of clays. Using a comprehensive dataset of 1080 global samples, four key geotechnical input variables—liquid limit (LL), plasticity index (PI), initial void ratio (e0), and natural water content w—were leveraged for accurate cc prediction. Missing data were addressed with K-Nearest Neighbors (KNN) imputation, effectively filling data gaps while preserving the dataset’s distribution characteristics. Ensemble learning techniques, including Random Forest (RF), Gradient Boosting Decision Trees (GBDT), Extreme Gradient Boosting (XGBoost), and a Stacking model, were applied. Among these, the Stacking model demonstrated the highest predictive performance with a Root Mean Squared Error (RMSE) of 0.061, a Mean Absolute Error (MAE) of 0.043, and a Coefficient of Determination (R2) value of 0.848 on the test set. Model interpretability was ensured through SHapley Additive exPlanations (SHAP), with e0 identified as the most influential predictor. The proposed framework significantly improves both prediction accuracy and interpretability, offering a valuable tool to enhance geotechnical design efficiency in coastal and clay-rich environments. Full article
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8 pages, 1015 KB  
Communication
Complex Formation of Ag+ and Li+ with Host Molecules Modeled on Intercalation of Graphite
by Yuriko Uetake and Hiroyuki Takemura
Molecules 2024, 29(17), 3987; https://doi.org/10.3390/molecules29173987 - 23 Aug 2024
Viewed by 1102
Abstract
Pi-stacked and box-shaped host molecules with xanthene as the basis and pyrene as the π-plane were synthesized to verify cation–π interactions between graphene and metal cations. Since crystal structure analysis was not available, DFT calculations were performed to determine the optimized structure, and [...] Read more.
Pi-stacked and box-shaped host molecules with xanthene as the basis and pyrene as the π-plane were synthesized to verify cation–π interactions between graphene and metal cations. Since crystal structure analysis was not available, DFT calculations were performed to determine the optimized structure, and the π-planes were found to have a slipped parallel structure, with average distances of 456.2–581.0 pm for the stacked compound and 463.4–471.4 pm for the box-shaped compound. Li+ and Ag+ were chosen as acceptors for complexation with metal ions, and their interactions with the π-plane were clarified by NMR titration. Clearly, the interaction with metal ions increased when pyrene π-planes were stacked rather than the pyrene itself. In the stacked compound, the association constants of Ag+ and Li+ were similar; however, in the box-shaped host molecule, only Ag+ had moderate coordination ability, but the interaction with Li+ was very weak, comparable to the interaction with pyrene. As a result, intercalation is more likely to occur in stacked host compound 1, which has some degree of freedom in the pyrene rings, than in the box-shaped compound. Full article
(This article belongs to the Special Issue Two-Dimensional Materials: From Synthesis to Applications)
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16 pages, 5991 KB  
Article
Investigation of Antioxidant Mechanisms of Novel Peptides Derived from Asian Swamp Eel Hydrolysate in Chemical Systems and AAPH-Induced Human Erythrocytes
by Xiao Wang, Bingjie Chen, Khushwant S. Bhullar, Hang Yang, Xiaohu Luo, Juan Fu, Hongru Liu, Di Su, Dapeng Sun, Yongjin Qiao and Wenzong Zhou
Antioxidants 2024, 13(8), 888; https://doi.org/10.3390/antiox13080888 - 23 Jul 2024
Cited by 8 | Viewed by 1796
Abstract
Sixteen novel antioxidant peptides from Asian swamp eel (ASE) were identified in previous studies. However, their chemical and cellular antioxidant mechanisms remain unclear. Molecular docking of these peptides with ABTS and DPPH radicals revealed the critical role of hydrogen bonding and Pi–Pi stacking [...] Read more.
Sixteen novel antioxidant peptides from Asian swamp eel (ASE) were identified in previous studies. However, their chemical and cellular antioxidant mechanisms remain unclear. Molecular docking of these peptides with ABTS and DPPH radicals revealed the critical role of hydrogen bonding and Pi–Pi stacking hydrophobic interactions between hydrophobic amino acid residues and free radicals. Residues, such as tryptophan, proline, leucine, and valine, played significant roles in these interactions. All these peptides exhibited notable erythrocyte morphoprotective effects in a model of AAPH-induced oxidative damage of human erythrocytes. Erythrocyte hemolysis was reduced primarily through the modulation of both non-enzymatic (GSH/GSSG) and enzymatic antioxidant systems (SOD, CAT, and GSH-Px) by these peptides. A decrease in levels of MDA, LDH release, and hemoglobin oxidation was observed. Among the peptides, VLYPW demonstrated superior chemical and cellular antioxidant activities, which may be attributed to its higher levels of tyrosine and tryptophan, as well as to its increased hydrophobic amino acid content. Full article
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18 pages, 3469 KB  
Article
On the Feasibility of an LCD-Based Real-Time Converter for Ionizing Radiation Imaging
by Adam Januszko, Eugeniusz Zych, Wiktor Piecek, Witalis Pellowski, Krzysztof A. Bogdanowicz and Agnieszka Iwan
Materials 2024, 17(13), 3320; https://doi.org/10.3390/ma17133320 - 4 Jul 2024
Viewed by 1233
Abstract
Here we present the cascade converter (CC), which provides real-time imaging of ionizing radiation (IoR) distribution. It was designed and manufactured with the simplest architecture, utilizing liquid crystal display (LCD) technology. Based on two merged substrates with transparent electrodes, armed with functional layers, [...] Read more.
Here we present the cascade converter (CC), which provides real-time imaging of ionizing radiation (IoR) distribution. It was designed and manufactured with the simplest architecture, utilizing liquid crystal display (LCD) technology. Based on two merged substrates with transparent electrodes, armed with functional layers, with the cell filled with nematic liquid crystal, a display-like, IoR-stimulated CC was achieved. The CC comprises low-absorbing polymer substrates (made of polyethylene terephthalate—PET) armed with a transparent ITO electrode covered with a thin semipermeable membrane of polymer (biphenylperfluorocyclobutyl: BP-PFCB) doped with functional nanoparticles (NPs) of Lu2O3:Eu. This stack was covered with a photoconductive layer of α-Se and finally with a thin polyimide (PI) layer for liquid crystal alignment. The opposite substrate was made of LCD-type glass with ITO and polyimide aligning layers. Both substrates form a cell with a twisted structure of nematic liquid crystal (TN) driven with an effective electric field Eeff. An effective electric field driving TN structure is generated with a sum of (1) a bias voltage VBIAS applied to ITO transparent electrodes and (2) the photogenerated additional voltage VXray induced between ITO and α-Se layers with a NPs-doped BP-PFCB polymer layer in-between. The IoR (here, X-ray) conversion into real imaging of the IoR distribution was achieved in the following stages: (1) conversion of IoR distribution into non-ionizing red light emitted with functional NPs, (2) transformation of red light into an electric charge distributed in a layer of the photoconductive α-Se, which is what results in the generation of distributed voltage VXray, and (3) a voltage-mediated, distributed switching of the TN structure observed with the naked eye. The presented imaging device is characterized by a simple structure and a simple manufacturing process, with the potential for use as a portable element of IoR detection and as a dosimeter. Full article
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