Search Results (90)

Microbial interactions within the rhizosphere are fundamental to plant health, influencing nutrient availability, stress tolerance, and pathogen resistance. Beneficial microbes, such as plant growth-promoting microbes (PGPMs), including bacteria and mycorrhizal fungi, enhance plant resilience through mechanisms like nutrient solubilization, phytohormone production, and pathogen suppression via antimicrobial compounds and siderophores. Root exudates, composed of sugars, organic acids, and secondary metabolites, act as chemoattractants that shape the rhizosphere microbiome by recruiting beneficial microbes. Microbial metabolites can, in turn, modulate plant physiology and exudate profiles, thereby reinforcing mutualistic interactions. Stress conditions alter exudate composition, enabling plants to attract specific microbes that aid in stress mitigation. Given the growing interest in microbiome-based agricultural solutions, this review aims to synthesize recent literature on plant–microbe interactions, with a focus on bidirectional signaling between plants and microbes. A structured literature search was conducted using databases such as PubMed, Scopus, and ScienceDirect to identify key studies on root exudation, microbial functions, and synthetic microbial communities (SynComs). We highlight major findings on how engineered microbiomes can enhance plant growth, resilience, and productivity, particularly under stress conditions. This review also explores how advances in SynCom design can promote sustainable agriculture by reducing reliance on chemical inputs. Full article

An ancient repertoire of ultraviolet (UV)-absorbing pigments which survive today in the phylogenetically oldest extant photosynthetic organisms, the cyanobacteria, point to a direction in evolutionary adaptation of the pigments and their associated biota; from largely UV-C absorbing pigments in the Archean to pigments covering ever more of the longer wavelength UV and visible regions in the Phanerozoic. Since photoprotection is not dependent on absorption, such a scenario could imply selection of photon dissipation rather than photoprotection over the evolutionary history of life, consistent with the thermodynamic dissipation theory of the origin and evolution of life which suggests that the most important hallmark of biological evolution has been the covering of Earth’s surface with organic pigment molecules and water to absorb and dissipate ever more completely the prevailing surface solar spectrum. In this article we compare a set of photophysical, photochemical, biosynthetic, and other inherent properties of the two dominant classes of cyanobacterial UV-absorbing pigments, the mycosporine-like amino acids (MAAs) and scytonemins. We show that the many anomalies and paradoxes related to these biological pigments, for example, their exudation into the environment, spectral coverage of the entire high-energy part of surface solar spectrum, their little or null photoprotective effect, their origination at UV-C wavelengths and then spreading to cover the prevailing Earth surface solar spectrum, can be better understood once photodissipation, and not photosynthesis or photoprotection, is considered as being the important variable optimized by nature. Full article

Overgrazing (OG) is an important driver of grassland ecosystem degradation and productivity decline. Plants may effectively cope with OG stress by regulating their synergistic interactions with plant growth-promoting rhizobacteria (PGPR) through root exudates. However, the synergistic regulatory mechanisms remain unclear. Under OG stress, Leymus chinensis recruited the specific PGPR strain Paraburkholderia graminis (B24) by regulating specific root exudate compounds, including amino acids, alkaloids, and organic acids, which enhance B24 chemotaxis and biofilm formation. The B24 inoculation systematically regulated the transcription of key plant growth and development genes, including those involved in nutrient transport and cell wall expansion, which enhanced nutrient uptake and promoted the overall growth of L. chinensis. Furthermore, B24 regulated the homeostasis of endogenous L. chinensis through the synergistic effects of hormones and the trade-off between growth and defense. Integrated transcriptomic and metabolomic analyses revealed that B24 regulation enhanced carbon and nitrogen metabolism, and energy supply after mowing, forming a holistic adaptive mechanism that enabled L. chinensis to effectively recover from mowing-induced stress, thereby improving its adaptability and regenerative capacity. This study provides a scientific basis and support for elucidating the response mechanisms of how grassland plants cope with OG stress, optimizing grassland management, and rapidly restoring and enhancing grassland productivity. Full article

Ascorbic acid (ASC) is a molecule naturally synthesized in plant cells, protecting against abiotic stresses by reducing reactive oxygen species (ROS), which cause oxidative damage. Aluminum (Al) toxicity is the major limiting factor on crop productivity in acidic soils, increasing ROS within cells and impairing the growth and development of plants. Exogenous antioxidant applications are an effective strategy to promote tolerance to abiotic stress. The objective was to evaluate the effect of foliar ASC applications (0, 50, 100, 200, and 400 mg L⁻¹ ASC) and their interaction with Al toxicity (0, 400 µM Al) in Star, an Al-sensitive cultivar of highbush blueberry. Significant increases of 1.6-fold in growth were observed in roots and leaves under treatment with 200 mg L⁻¹ ASC. In the same treatment, increased pigments and antioxidant activity (~1.2- to 2.3-fold) were observed concomitant with reduced lipid peroxidation. Positive correlations between organic acid exudation, the ASC/DHA ratio, and calcium levels were observed, whereas a negative correlation between lipid peroxidation and dehydroascorbate (DHA) was observed. Foliar ASC application also increased the ASC/DHA ratio in leaves and enhanced 2.2-fold organic acid exudation in the 200 mg L⁻¹ ASC treatment. The results suggest that foliar ASC applications improved redox balance and underscore the potential of ASC as a practical solution to enhance resilience in Al-sensitive plants. Full article

Candida colonization and biofilms are significant contributors to impaired wound healing. Consequently, improved treatments are needed to eradicate Candida biofilms in wounds. Wounds present complex biofilm extracellular matrix environments, with microbial cells frequently enmeshed in matrices comprising wound exudate macromolecular gels. We evaluated the ability of a polygalacturonic and caprylic acid (PG + CAP) ointment to eradicate Candida albicans, C. parapsilosis, C. glabrata, C. tropicalis, and C. auris biofilms in a fibrin gel wound biofilm model of the complex wound biofilm environment. Hypochlorous acid (HOCl) is a disinfecting antimicrobial agent that is widely used as wound irrigant, and this was used as a comparator. A single treatment with PG + CAP reduced the number of viable organisms in the C. albicans and C. glabrata biofilms by over 5 log₁₀, in the C. parapsilosis and C. auris biofilms by over 4 log₁₀, and in the C. tropicalis biofilm by 3.85 log₁₀. PG + CAP was superior (p < 0.01) to HOCl in eradicating all Candida species biofilms, except for C. auris, for which both treatments fully eradicated all viable organisms. The use of HOCl in Candida-colonized wounds should include consideration of the extracellular matrix load in the wound bed. PG + CAP warrants further study in wounds compromised by Candida biofilms. Full article

It is well established that root exudates play a crucial role in shaping the assembly of plant rhizosphere microbial communities. Nonetheless, our understanding of how different types of exudates influence the abundance of potential pathogens in soil remains insufficient. Investigating the effects of root exudates on soil-dwelling pathogenic fungi is imperative for a comprehensive understanding of plant–fungal interactions within soil ecosystems and for maintaining soil health. This study aimed to elucidate the effects of the principal components of root exudates—flavonoids (FLA), phenolic acids (PA), and organic acids (OA)—on soil microbial communities and soil properties, as well as to investigate their mechanisms of action on soil potential pathogenic fungi. The results demonstrated that the addition of these components significantly modified the composition and diversity of soil microbial communities, with OA treatment notably altering the composition of dominant microbial taxa. Furthermore, the introduction of these substances facilitated the proliferation of saprophytic fungi. Additionally, the incorporation of flavonoids, phenolic acids, and organic acids led to an increased abundance of potential pathogenic fungi in the soil, particularly in the FLA and PA treatments. It was observed that the addition of these substances enhanced soil fertility, pH, and antioxidant enzyme activity. Specifically, FLA and PA treatments reduced the abundance of dominant microbial taxa, whereas OA treatment altered the composition of these taxa. These findings suggest that the inclusion of flavonoids, phenolic acids, and organic acids could potentially augment the enrichment of soil potential pathogenic fungi by modulating soil properties and enzymatic activities. These results offer valuable insights into the interactions between plants and fungal communities in soil ecosystems and provide a scientific foundation for the management and maintenance of soil health. Full article

In recent years, the essential oil of Satureja species has been studied as a source of biocidal activity with potential applications in organic farming such as bio-pesticides. The present study aims to determine the potential of essential oil (EO), exudate fraction (EF) and methanolic extract (ME) of Satureja kitaibelii Wierzb. ex Heuff. to inhibit the mycelial growth of phytopathogenic fungi and acetylcholinesterase (AChE). Additionally, ME was tested for inhibitory activity on seed germination and root elongation. Phytochemical analysis was conducted using gas chromatography–mass spectrometry (GC–MS) and thin-layer chromatography (TLC). Biological activities were studied using in vitro methods. p-Cymene, limonene, geraniol, carvacrol and borneol were identified as the main components of EO. Oleanolic and ursolic acid, carvacrol and flavonoid aglycones were determined as the most abundant bioactive compounds of EF, whereas rosmarinic acid and flavonoid glycosides were found in ME. EO reduced the growth of all tested plant pathogens, indicated by 40% to 84% inhibition of mycelial growth (IMG). The growth rates of oomycetes Phytophthora cryptogea Pethybr. & Laff. and Phytophthora nicotianae Breda de Haan were affected to the greatest extent with 84% and 68% IMG. EF showed the most potent AChE inhibitory activity with IC₅₀ value of 0.18 mg/mL. Aqueous solutions of the ME with a concentration above 5 mg/mL were found to inhibit seed germination by more than 90%, whereas a reduction in root elongation was observed at 3 mg/mL. The present study provides for the first time data for the pesticidal properties of EO, EF and ME of S. kitaibelii. Full article

Arbuscular mycorrhizal fungi (AMF) have been shown to play a major role in regulating the accumulation, transport, and toxicity of cadmium (Cd) in plant tissues. This review aims to highlight the current understanding of the mechanisms by which AMF alleviate Cd toxicity in plants. Cd accumulation in agricultural soils has become an increasing global concern due to industrial activities and the use of phosphatic fertilizers. Cd toxicity disrupts various physiological processes in plants, adversely affecting growth, photosynthesis, oxidative stress responses, and secondary metabolism. AMF alleviate Cd stress in plants through multiple mechanisms, including reduced Cd transport into plant roots, improved plant nutritional status, modulation of organic acid and protein exudation, enhanced antioxidant capacity, and maintenance of ion homeostasis. AMF colonization also influences Cd speciation, bioavailability, and compartmentalization within plant tissues. The expression of metal transporter genes, as well as the synthesis of phytochelatins and metallothioneins, are modulated by AMF during Cd stress. However, the efficacy of AMF in mitigating Cd toxicity depends on several factors, such as soil properties, plant species, AMF taxa, and experimental duration. Further knowledge of the intricate plant–AMF–Cd interactions is crucial for optimizing AMF-assisted phytoremediation strategies and developing Cd-tolerant and high-yielding crop varieties for cultivation in contaminated soils. Full article

Intercropping can enable more efficient resource use and increase yield. Most current studies focus on the correlation between soil nutrients and crop yield under intercropping conditions. However, the mechanisms related to root exudates and soil nutrients remain unclear. Therefore, this study explored the correlation between rhizosphere soil nutrients and root exudates in sugarcane/peanut intercropping. Root extracts, root exudates, rhizosphere soil enzyme activities, and soil nutrients were analyzed and compared in monocultured and intercropped peanut and sugarcane at different growth stages. The root metabolites were annotated using the Kyoto Encyclopedia of Genes and Genomes pathways to further identify the connection between soil nutrients and root exudates. The effects of intercropping differed in peanut and sugarcane at different growth stages, and the difference between podding and pod-filling stages was significant. Intercropping generally had a great effect on peanut; it not only significantly increased the organic acid, soluble sugars, and phenolic acids in root exudates and extracts from peanuts, but also significantly increased rhizosphere soil enzyme activities and soil nutrient levels. Intercropping peanuts promoted fumaric acid secretion from roots and significantly affected the metabolic pathways of alanine, aspartate, and glutamate. Sugarcane/peanut intercropping can increase root exudates and effectively improve soil nutrients. The changes in soil nutrients are closely related to the effects of fumaric acid on alanine, aspartate, and glutamate metabolism. Full article

This study of underground multitrophic communication, involving plant roots, insects, and parasitic nematodes, is an emerging field with significant implications for understanding plant–insect–nematode interactions. Our research investigated the impact of wireworm (Agriotes lineatus L. [Coleoptera: Elateridae]) infestations on the ascorbate–glutathione system in sweet pepper (Capsicum annuum L.) plants in order to study the potential role in root-exudate-mediated nematode chemotaxis. We observed that an A. lineatus infestation led to a decrease in leaf ascorbate levels and an increase in root ascorbate, with corresponding increases in the glutathione content in both roots and leaves. Additionally, a pigment analysis revealed increased carotenoid and chlorophyll levels and a shift towards a de-epoxidized state in the xanthophyll cycle. These changes suggest an individual and integrated regulatory function of photosynthetic pigments accompanied with redox modifications of the ascorbate–glutathione system that enhance plant defense. We also noted changes in the root volatile organic compound (VOC). Limonene, methyl salicylate, and benzyl salicylate decreased, whereas hexanal, neoisopulegol, nonanal, phenylethyl alcohol, m-di-tert-butylbenzene, and trans-β-ionone increased in the roots of attacked plants compared to the control group. Most notably, the VOC hexanal and amino acid exudate cysteine were tested for the chemotaxis assay. Nematode responses to chemoattractants were found to be species-specific, influenced by environmental conditions such as temperature. This study highlights the complexity of nematode chemotaxis and suggests that VOC-based biological control strategies must consider nematode foraging strategies and environmental factors. Future research should further explore these dynamics to optimize nematode management in agricultural systems. Full article

Low-molecular-weight organic acids (LMWOAs) are essential O-containing metal-binding ligands involved in maintaining metal homeostasis, various metabolic processes, and plant responses to biotic and abiotic stress. Malate, citrate, and oxalate play a crucial role in metal detoxification and transport throughout the plant. This review provides a comparative analysis of the accumulation of LMWOAs in excluders, which store metals mainly in roots, and hyperaccumulators, which accumulate metals mainly in shoots. Modern concepts of the mechanisms of LMWOA secretion by the roots of excluders and hyperaccumulators are summarized, and the formation of various metal complexes with LMWOAs in the vacuole and conducting tissues, playing an important role in the mechanisms of metal detoxification and transport, is discussed. Molecular mechanisms of transport of LMWOAs and their complexes with metals across cell membranes are reviewed. It is discussed whether different endogenous levels of LMWOAs in plants determine their metal tolerance. While playing an important role in maintaining metal homeostasis, LMWOAs apparently make a minor contribution to the mechanisms of metal hyperaccumulation, which is associated mainly with root exudates increasing metal bioavailability and enhanced xylem loading of LMWOAs. The studies of metal-binding compounds may also contribute to the development of approaches used in biofortification, phytoremediation, and phytomining. Full article

Rhizosphere environments play a vital role in the nutrient cycling of crops and soil organic nitrogen mineralization. Sugar beet is a highly nitrogen (N)-demanding crop, and it is necessary to explore the relationship between the sugar beet root exudates, the microbial community, and nitrogen utilization. In this study, a special separation method was employed to create rhizosphere (H3) and non-rhizosphere (H2 and H1) environments for sugar beet. After 50 d of cultivation in nearly inorganic-free soil, the microbial diversity and its correlation with root metabolites and N were examined. The results showed that in H3, the inorganic N content was over 23 times higher than in H1 and H2, with a 13.1% higher relative abundance of ammonia-oxidizing bacteria compared to H2 and a 32% higher abundance than H1. The relative abundance of nitrite-oxidizing bacteria was also 18.8% higher than in H1. Additionally, a significant positive correlation was observed between inorganic nitrogen content and serine (Ser) and isoleucine (Ile). The organic nitrogen content exhibited positive correlations with glycine (Gly), alanine (Ala), and tyrosine (Tyr) but displayed negative correlations with certain amino acids, organic acids, and glucose. The co-linearity network indicated that the microbial composition in H3 also exhibited higher node connectivity. It can be inferred that under the influence of sugar beet root exudates, the changes in the rhizosphere’s microbial diversity were more intricate, thereby benefiting soil nitrogen cycling and inorganic N accumulation. These findings provide profound insight into sugar beet soil organic nitrogen mineralization and contribute to the sustainable and environmentally friendly development of modern agriculture. Full article

Aluminum (Al) makes up a third of the Earth’s crust and is a widespread toxic contaminant, particularly in acidic soils. It impacts crops at multiple levels, from cellular to whole plant systems. This review delves into Al’s reactivity, including its cellular transport, involvement in oxidative redox reactions, and development of specific metabolites, as well as the influence of genes on the production of membrane channels and transporters, alongside its role in triggering senescence. It discusses the involvement of channel proteins in calcium influx, vacuolar proton pumping, the suppression of mitochondrial respiration, and the initiation of programmed cell death. At the cellular nucleus level, the effects of Al on gene regulation through alterations in nucleic acid modifications, such as methylation and histone acetylation, are examined. In addition, this review outlines the pathways of Al-induced metabolic disruption, specifically citric acid metabolism, the regulation of proton excretion, the induction of specific transcription factors, the modulation of Al-responsive proteins, changes in citrate and nucleotide glucose transporters, and overall metal detoxification pathways in tolerant genotypes. It also considers the expression of phenolic oxidases in response to oxidative stress, their regulatory feedback on mitochondrial cytochrome proteins, and their consequences on root development. Ultimately, this review focuses on the selective metabolic pathways that facilitate Al exclusion and tolerance, emphasizing compartmentalization, antioxidative defense mechanisms, and the control of programmed cell death to manage metal toxicity. Full article

This study examines the fluorescence characteristics of dissolved organic matter (DOM) in soils from different periods of rice–crayfish integrated systems (RCISs) in China. Utilizing three-dimensional excitation–emission matrix (3D-EEM) fluorescence spectroscopy, the study investigated the hydrophobicity, molecular weight distributions, and fluorescence properties of DOM in 2-, 5-, and 7-year RCIS operations, with rice monoculture (RM) serving as a control. The findings indicate that in the initial 2 years of an RCIS, factors such as rice straw deposition, root exudates, and crayfish excretions increase dissolved organic carbon (DOC) release and alter DOM composition, increasing the humic acid content in the soil. As the system matures at 5 years, improvements in soil structure and microbial activity lead to the breakdown of high-molecular-weight humic substances and a rise in small-molecular-weight amino acids. By the 7-year mark, as the aquatic ecosystem stabilizes, there is an increase in humic substances and the humification index in the soil DOM. These variations in DOM properties are essential for understanding the effects of integrated farming systems on soil quality and sustainability. Full article

Phosphorus availability is a serious problem for plants growing and grown in acidic soils of bogs, poor in macronutrients. The application of phosphorus fertilizers to such soils is unprofitable because of the physical and chemical properties of these soils, where phosphate is firmly bound to organic and inorganic compounds and becomes inaccessible to plants. Plants of the Vaccinium genus both from natural stands and commercial plantations may suffer from phosphorus deficiency, so they need to have a number of adaptations that allow them to efficiently extract phosphorus. This review addresses the following issues in relation to plants of the Vaccinium genus: sources of phosphorus for plants; the release of phosphate ions from soil components; the transport of phosphate ions into plants; and the importance of mycorrhiza in supplying phosphorus to plants. Thus, we sought to draw researchers’ attention to sources and routes of phosphorus supply of plants of the Vaccinium genus and its unexplored aspects. Full article