Search Results (25)

Heat-stress resilience is vital for poultry in tropical/subtropical regions where high temperatures impair productivity. Ake chickens, as the only naked-neck chicken breed in China, exhibit robust resistance to heat stress, but this breed lacks clarity in its genetic origins. This study utilized the next-generation sequencing data from 22 chicken breeds to conduct phylogenetic and population analyses. Gene flow analysis revealed a gene migration event from Iranian naked-neck chickens and Indian local breeds to Ake chickens, and population separation estimates suggested that the naked-neck gene was introduced to China around 500–600 years ago. NJ-tree, PCA, and population structure analyses showed that Ake chickens cluster with Yunnan native breeds, which diverged only 100–200 years ago. A selective sweep in the candidate region on chromosome 3 (97.0–97.37 Mb) showed elevated genetic differentiation (F_ST) and reduced nucleotide diversity (π) compared to the genome-wide average, indicating rapid fixation of the trait under natural/artificial selection. Demographic reconstruction indicated that the current effective size of Ake chickens is stable at 2000–3000 individuals. These findings deepen our understanding of Ake chicken evolution and provide valuable insights for conservation and the development of heat-stress-resistant poultry breeds. Full article

South Africa recognizes the value of indigenous breeds such as Potchefstroom Koekoek, Boschveld, Ovambo, Venda, Naked Neck, and nondescript village chickens. Indigenous chickens support sustainable food systems, improve nutrition, and enhance livelihoods in rural communities, thereby contributing to the United Nations’ Sustainable Development Goal (SDG) 2 on Zero Hunger. These breeds are not only vital to rural farmers for food production, income generation, and subsistence but also provide rural farmers with cheap nutritious protein such as eggs and meat for household consumption. Moreover, they are preferred by rural farmers because they are relatively affordable to produce, can withstand harsh environmental conditions amid accelerated climate change compared to exotic breeds, and require less/no feed supplementation. However, despite the numerous advantages of keeping these chickens, it has been found that they are mostly in danger of extinction due to evolving production methods that favor exotic breeds. Therefore, understanding their extinction status, different implications for conserving their genetic material, challenges encountered, and future approaches to rescue these breeds remain vital. Hence, the aim of this systematic review was to assess the extinction status, challenges, and conservation approaches for these breeds. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines were utilized to search for suitable articles addressing the objective of the current review. Research articles were grouped and evaluated for eligibility, and the data from the Domestic Animal Diversity Information System database were used. Records such as duplicates of studies addressing origins, phenotypic and genetic diversity, the conservation of indigenous chickens, semen cryopreservation of indigenous chickens, climate change effects on indigenous chickens, and the use of extenders with exotic chickens and other chicken types, reports in other languages, and reports that were inaccessible were excluded. Articles addressing origins, phenotypic and genetic diversity, the conservation of indigenous chickens, semen cryopreservation of indigenous chickens, climate change effects on indigenous chickens, and the use of extenders with indigenous chickens were included in this review. The keywords used to search articles online were as follows: South African indigenous chicken; extension status; conservation; genetic resources; genetic markers; effective population size; inbreeding; and characterization. This systematic review found that there is less information in the Domestic Animal Diversity Information System regarding South African indigenous and village chickens, suggesting a lack of reporting in this system. Moreover, our review confirmed that most South African indigenous chickens are threatened and, hence, require interventions such as assisted reproductive technologies and other strategies in order to improve efficiency. Full article

The old Hungarian poultry breeds are the hidden reserves of the Carpathian Basin’s agriculture. The aim of this study was to examine the slaughter weight, carcass merit, and certain meat properties of two of them: the Partridge-colored Hungarian Chicken (PC) and the White Transylvanian Naked-neck Chicken (TN) under semi-intensive and traditional fattening conditions. Test slaughtering of chickens was conducted at 12th and 18th weeks of age. The eviscerated body weight (and the weight of cuts) of the PC (1140 g) and the cockerels of both breeds (1148 g) was larger than that of TN (878 g) and pullets (870 g). The farming system did not influence the carcass composition. At the same time, the pullets were characterized with larger values (p < 0.001) in regards to, for example, the breast–whole leg (0.81:1), breast fillet–thigh fillet (1.29:1), breast fillet–breast bone proportion (2.40:1) in comparison to the cockerels (0.7:1, 1.10:1 and 2.17:1, respectively). Examinations of meat quality revealed that the pH-value of the thigh (5.73 vs. 5.83) and breast meat (6.21 vs. 6.43) of the PC was significantly lower. However, the lightness (L*) of breast fillet was higher (55.2) than that in the TN (49.9). In addition, the yellowness (b*) value of the breast meat and breast skin was significantly higher in the PC, but the redness (a*) of the breast skin was higher in the TN. Results showed that the farming system affects these values, too. Accordingly, the yellowness (b*) of breast meat, breast skin, thigh meat, and thigh skin was significantly higher in the traditional group. The PC showed more satisfactory results in poultry production today. However, the reddish meat of the TN should be emphasized, which is excellent and appropriate in traditional agriculture. It is argued that the indigenous chicken breeds should be supported for the chicken meat trade regardless of their competitiveness. Full article

Climate change poses a significant threat to the poultry industry, especially in hot climates that adversely affect chicken growth, development, and productivity through heat stress. This literature review evaluates the evolutionary background of chickens with the specific genetic characteristics that can help chickens to cope with hot conditions. Both natural selection and human interventions have influenced the genetic characteristics of the breeds used in the current poultry production system. The domestication of chickens from the Red junglefowl (Gallus gallus) has resulted in the development of various breeds with distinct genetic differences. Over the past few years, deliberate breeding for desirable traits (such as meat production and egg quality) in chickens has resulted in the emergence of various economically valuable breeds. However, this selective breeding has also caused a decrease in the genetic diversity of chickens, making them more susceptible to environmental stressors like heat stress. Consequently, the chicken breeds currently in use may possess a limited ability to adapt to challenging conditions, such as extreme heat. This review focuses on evaluating potential genes and pathways responsible for heat tolerance, including heat shock response, antioxidant defense systems, immune function, and cellular homeostasis. This article will also discuss the physiological and behavioral responses of chicken varieties that exhibit genetic resistance to heat, such as the naked neck and dwarf traits in different indigenous chickens. This article intends to review the current genomic findings related to heat tolerance in chickens that used methods such as the genome-wide association study (GWAS) and quantitative trait loci (QTL) mapping, offering valuable insights for the sustainability of poultry in the face of global warming. Full article

The classification of Stropharia rugoso-annulata is currently reliant on manual sorting, which may be subject to bias. To improve the sorting efficiency, automated sorting equipment could be used instead. However, sorting naked mushrooms in real time remains a challenging task due to the difficulty of accurately identifying, locating and sorting large quantities of them simultaneously. Models must be deployable on resource-limited devices, making it challenging to achieve both a high accuracy and speed. This paper proposes the APHS-YOLO (YOLOv8n integrated with AKConv, CSPPC and HSFPN modules) model, which is lightweight and efficient, for identifying Stropharia rugoso-annulata of different grades and seasons. This study includes a complete dataset of runners of different grades in spring and autumn. To enhance feature extraction and maintain the recognition accuracy, the new multi-module APHS-YOLO uses HSFPNs (High-Level Screening Feature Pyramid Networks) as a thin-neck structure. It combines an improved lightweight PConv (Partial Convolution)-based convolutional module, CSPPC (Integration of Cross-Stage Partial Networks and Partial Convolution), with the Arbitrary Kernel Convolution (AKConv) module. Additionally, to compensate for the accuracy loss due to lightweighting, APHS-YOLO employs a knowledge refinement technique during training. Compared to the original model, the optimized APHS-YOLO model uses 57.8% less memory and 62.5% fewer computational resources. It has an FPS (frames per second) of over 100 and even achieves 0.1% better accuracy metrics than the original model. These research results provide a valuable reference for the development of automatic sorting equipment for forest farmers. Full article

The new Radiological Corticalization Index (CI) is an indicator that describes bone remodeling near the dental implant’s neck at the pixel level and is not visible to the naked eye. The aim of this research was to evaluate the correlation between the CI and bone remodeling using only radiographic (RTG) images. RTG samples were divided into groups depending on prosthetic restoration; the implant neck area around dental implants was examined, and texture features of the RTG images were analyzed. The study also investigated the type of prosthetic restoration and its influence as a factor on bone structure. The statistical analysis included evaluating feature distribution, comparing means (t-test) or medians (W-test), and performing a regression analysis and one-way analysis of variance or the Kruskal–Wallis test, as no normal distribution or between-group variance was indicated for the significant differences in the investigated groups. Differences or relationships were considered statistically significant at p < 0.05. The research revealed correlations between single crowns, overdenture restoration, bridge restoration, platform switching, prosthetic fracture, CI, and also marginal bone loss where p was lower than 0.05. However, the corticalization phenomenon itself has not yet been fully explored. The findings suggest that, depending on the type of prosthetic restoration, the corticalization index may correlate with marginal bone loss or not. Further research is necessary, as the index is suspected to not be homogeneous. Full article

Recently, in vitro gene preservation has gained ground thanks to its lower cost and higher stability compared to in vivo techniques. One of the methods that can preserve female-specific W chromosome-linked genes is primordial germ cell (PGC) freezing. PGCs can be isolated from Hamburger–Hamilton stage 14–16 embryos via blood sampling. In our experiment, we used two newly established Black Transylvanian naked neck chicken cell lines and four cell lines from our gene bank. We compared two different freezing media (FAM1 and FAM2) in this study. The cell number and viability of the PGCs were measured before freezing (BF) and after thawing on Day 0, Day 1, and Day 7 of cultivation. We analyzed the germ cell-specific chicken vasa homologue (CVH) expression profile in PGCs using RT-qPCR. We found that on Day 0, immediately after thawing, the cell number in cell lines frozen with the FAM2 medium was significantly higher than in the FAM1-treated ones. On Day 1 and Day 7, the cell number and viability were also higher in most cell lines frozen with FAM2, but the difference was insignificant. The freezing also affected the chicken vasa homologue gene expression in male lines treated with both freezing media. Full article

The poultry sector is one of the most important food industries in the world. Poultry production generates high-value protein products (meat and eggs) that are produced efficiently without the need for large areas. In poultry production, especially in the tropics, environmental factors, such as temperature and humidity, play a major role. Heat stress (HS) causes behavioral, physical, and physiological changes in poultry, with severe financial impacts. Therefore, it is important to find strategies to minimize it. The naked neck (Na) is an autosomal, incompletely dominant gene. Compared with normal feathered birds, these animals are known for their ability to adapt, perform, and reproduce under hot and humid climate conditions. Due to the absence of feathers on the neck, these animals increase heat dissipation, alleviating adverse heat effects, especially on productive performance. Genetic improvement of heat tolerance may provide a low-cost solution, of particular interest for developing countries in the tropics. The focus of this review is to evaluate the impact of HS in poultry with a special emphasis on the advantages of using the Na gene. Full article

The latest developments in the management of head and neck cancer show an increasing trend in the implementation of novel approaches using artificial intelligence for better patient stratification and treatment-related risk evaluation. Radiomics, or the extraction of data from various imaging modalities, is a tool often used to evaluate specific features related to the tumour or normal tissue that are not identifiable by the naked eye and which can add value to existing clinical data. Furthermore, the assessment of feature variations from one time point to another based on subsequent images, known as delta radiomics, was shown to have even higher value for treatment-outcome prediction or patient stratification into risk categories. The information gathered from delta radiomics can, further, be used for decision making regarding treatment adaptation or other interventions found to be beneficial to the patient. The aim of this work is to collate the existing studies on delta radiomics in head and neck cancer and evaluate its role in tumour response and normal-tissue toxicity predictions alike. Moreover, this work also highlights the role of holomics, which brings under the same umbrella clinical and radiomic features, for a more complex patient characterization and treatment optimisation. Full article

The effects of genotype and diet on growth performance, carcass traits and blood metabolites were investigated. The commercial Ross 308 (R) chickens genotype, a local Black Transylvanian Naked Neck (BTNN) breed, and their crosses were used in an 81-day study. A total of 720 one-d-old chicks were allotted into eight groups in a 4 × 2 factorial design with 4 genotypes: Rmale × Rfemale (R), BTNNmale × Rfemale (BTNN-R), BTNNmale × BTNNfemale (BTNN), Rmale × BTNNfemale (R-BTNN), and 2 diets: control and low-metabolisable energy (LME). Genotype affected performance parameters, namely body weight gain (BWG), feed intake (FI), energy intake (EI), feed conversion ratio (FCR), energy conversion ratio (ECR), and production efficiency factor (PEF), irrespective of growth phase (p < 0.05). Diet had no significant effect on overall BWG, EI, ECR and PEF, except that it increased FI and FCR. Genotype influenced the carcass and organ yields (p < 0.05), except bursa weight, while diet had no significant effect. Blood parameters (total cholesterol, triglycerides, glucose, albumin and phosphorus) were affected only by genotype (p < 0.05). In summary, results show that from the two crossbreedings obtained between R and BTNN genotypes, the BTNN-R growth performance and carcass traits were superior to R-BTNN, even though both have had a similar improved plasma response. Lowering the ME level did not significantly affect the BWG but increased FI and FCR, whereas the production index was similar regardless of the genotype. Based on the present results, we concluded that the BTNN-R crosses are the most suitable for use in alternative rearing systems for slow-growing chickens. Full article

Head and neck cancer has great regional anatomical complexity, as it can develop in different structures, exhibiting diverse tumour manifestations and high intratumoural heterogeneity, which is highly related to resistance to treatment, progression, the appearance of metastases, and tumour recurrences. Radiomics has the potential to address these obstacles by extracting quantitative, measurable, and extractable features from the region of interest in medical images. Medical imaging is a common source of information in clinical practice, presenting a potential alternative to biopsy, as it allows the extraction of a large number of features that, although not visible to the naked eye, may be relevant for tumour characterisation. Taking advantage of machine learning techniques, the set of features extracted when associated with biological parameters can be used for diagnosis, prognosis, and predictive accuracy valuable for clinical decision-making. Therefore, the main goal of this contribution was to determine to what extent the features extracted from Computed Tomography (CT) are related to cancer prognosis, namely Locoregional Recurrences (LRs), the development of Distant Metastases (DMs), and Overall Survival (OS). Through the set of tumour characteristics, predictive models were developed using machine learning techniques. The tumour was described by radiomic features, extracted from images, and by the clinical data of the patient. The performance of the models demonstrated that the most successful algorithm was XGBoost, and the inclusion of the patients’ clinical data was an asset for cancer prognosis. Under these conditions, models were created that can reliably predict the LR, DM, and OS status, with the area under the ROC curve (AUC) values equal to 0.74, 0.84, and 0.91, respectively. In summary, the promising results obtained show the potential of radiomics, once the considered cancer prognosis can, in fact, be expressed through CT scans. Full article

Naked goose neck barnacles Conchoderma can grow on a wide variety of marine organisms. The taxonomic status of two of its species—C. virgatum and C. hunteri—are currently controversial. Some studies suggest that C. hunteri is a subspecies, variety or growth forms of C. virgatum, because both have great morphological variations, but other studies consider C. hunteri and C. virgatum to be distinct species. The present study examines the morphology and sequence divergence of the COI gene in C. virgatum, C. hunteri and other closely related species. There are consistent morphological differences between C. virgatum and C. hunteri in the tergum, carina and fifth teeth of the mandible. Phylogenetic analysis based on the divergence in the COI gene revealed that C. virgatum and C. hunteri form sister clades with high bootstrap values. The K2P distances within C. hunteri and C. virgatum are 0.034 ± 0.008 and 0.002 ± 0.001 for the COI sequences, respectively. The K2P distance between C. hunteri and C. virgatum is 0.097 ± 0.016. Morphological and molecular evidence confirm that C. hunteri is a valid species. Full article

The poultry industry in the United States has traditionally implemented non-chemical and chemical interventions against Salmonella spp. and Campylobacter spp. on the basis of experience and word-of-mouth information shared among poultry processors. The effects of individual interventions have been assessed with microbiological testing methods for Salmonella spp. and Campylobacter spp. prevalence as well as quantification of indicator organisms, such as aerobic plate counts (APC), to demonstrate efficacy. The current study evaluated the loads of both indicators and pathogens in a commercial chicken processing facility, comparing the “normal chemical”, with all chemical interventions turned-on, at typical chemical concentrations set by the processing plant versus low-chemical process (“reduced chemical”), where all interventions were turned off or reduced to the minimum concentrations considered in the facility’s HACCP system. Enumeration and prevalence of Salmonella spp. and Campylobacter spp. as well as indicator organisms (APC and Enterobacteriaceae—EB) enumeration were evaluated to compare both treatments throughout a 25-month sampling period. Ten locations were selected in the current bio-mapping study, including live receiving, rehanger, post eviscerator, post cropper, post neck breaker, post IOBW #1, post IOBW #2, prechilling, post chilling, and parts (wings). Statistical process control parameters for each location and processing schemes were developed for each pathogen and indicator evaluated. Despite demonstrating significant statistical differences between the normal and naked processes in Salmonella spp. counts (“normal” significantly lower counts than the “reduced” at each location except for post-eviscerator and post-cropper locations), the prevalence of Salmonella spp. after chilling is comparable on both treatments (~10%), whereas for Campylobacter spp. counts, only at the parts’ location was there significant statistical difference between the “normal chemical” and the “reduced chemical”. Therefore, not all chemical intervention locations show an overall impact on Salmonella spp. or Campylobacter spp., and certain interventions can be turned off to achieve the same or better microbial performance if strategic intervention locations are enhanced. Full article

The research aimed to evaluate the influence exerted by the removal of the testicles (orchidectomy) in roosters on the fatty acids profile. In this regard, two batches of roosters belonging to the Transylvanian Naked Neck breed were formed; one batch was experimental (Lexp), composed of 20 birds castrated at the age of 7 weeks, and one batch was control (Lm), composed of 10 uncastrated roosters. The birds of the two groups were raised under identical conditions and received the same type of compound feed; their slaughter was performed at the age of 20 weeks. The results obtained after reporting the values of saturated fatty acids to unsaturated fatty acids recorded the highest value of 0.47 in the case of the muscles from the upper thighs of roosters (Lm). Regarding the ratio between polyunsaturated fatty acids and monounsaturated fatty acids, the highest value of 1.12 was calculated for the muscles of the upper thighs from capons (Lexp). Regarding the Ω3/Ω6 ratio, the highest value of 17.81 was calculated for the muscles of the upper thighs from the capons, while at the opposite pole was the result for the pectoral muscles of roosters from Lm, with the value of 12.48. We recommend continuing research in this direction. Full article

Vertebral disc degenerative disease (DDD) affects millions of people worldwide and is a critical factor leading to low back and neck pain and consequent disability. Currently, no strategy has addressed curing DDD from fundamental aspects, because the pathological mechanism leading to DDD is still controversial. One possible mechanism points to the homeostatic status of extracellular matrix (ECM) anabolism, and catabolism in the disc may play a vital role in the disease’s progression. If the damaged disc receives an abundant amount of cartilage, anabolic factors may stimulate the residual cells in the damaged disc to secrete the ECM and mitigate the degeneration process. To examine this hypothesis, a cartilage anabolic factor, Runx1, was expressed by mRNA through a sophisticated polyamine-based PEG-polyplex nanomicelle delivery system in the damaged disc in a rat model. The mRNA medicine and polyamine carrier have favorable safety characteristics and biocompatibility for regenerative medicine. The endocytosis of mRNA-loaded polyplex nanomicelles in vitro, mRNA delivery efficacy, hydration content, disc shrinkage, and ECM in the disc in vivo were also examined. The data revealed that the mRNA-loaded polyplex nanomicelle was promptly engulfed by cellular late endosome, then spread into the cytosol homogeneously at a rate of less than 20 min post-administration of the mRNA medicine. The mRNA expression persisted for at least 6-days post-injection in vivo. Furthermore, the Runx1 mRNA delivered by polyplex nanomicelles increased hydration content by ≈43% in the punctured disc at 4-weeks post-injection (wpi) compared with naked Runx1 mRNA administration. Meanwhile, the disc space and ECM production were also significantly ameliorated in the polyplex nanomicelle group. This study demonstrated that anabolic factor administration by polyplex nanomicelle-protected mRNA medicine, such as Runx1, plays a key role in alleviating the progress of DDD, which is an imbalance scenario of disc metabolism. This platform could be further developed as a promising strategy applied to regenerative medicine. Full article