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16 pages, 8356 KB  
Article
First Experience with Hypothermic Oxygenated Perfusion in Human Uteri: Feasibility and Metabolic Characterization
by Keyue Sun, Nasim Eshraghi, Fernanda Walsh Fernandes, Sangeeta Satish, Chunbao Jiao, Fatma Selin Yildirim, Geofia Crasta, Omer F. Karakaya, Koki Takase, Hiroshi Horie, Karen S. Keslar, Dylan Isaacson, William Baldwin, Robert L. Fairchild, Koji Hashimoto, Alejandro Pita, Alvin Wee, Mariam AlHilli, Charles Miller, Mohamed Eltemamy, Tommaso Falcone, Andreas Tzakis, Elliot Richards and Andrea Schlegeladd Show full author list remove Hide full author list
J. Clin. Med. 2026, 15(8), 2820; https://doi.org/10.3390/jcm15082820 - 8 Apr 2026
Abstract
Background: Uterus transplantation (UTx) is an emerging treatment for absolute uterine factor infertility. However, the use of deceased donors is limited, and donation after circulatory death (DCD) has not yet been utilized. Ischemic injury remains a major barrier, particularly compared with living [...] Read more.
Background: Uterus transplantation (UTx) is an emerging treatment for absolute uterine factor infertility. However, the use of deceased donors is limited, and donation after circulatory death (DCD) has not yet been utilized. Ischemic injury remains a major barrier, particularly compared with living donor procedures. Hypothermic oxygenated perfusion (HOPE), which has shown protective effects in heart, liver, and kidney transplantation, may offer similar benefits for uterine grafts. Methods: We report the first series applying HOPE to human uteri to improve preservation and enable metabolic injury assessment during perfusion. Six uteri (3 DBD, 3 DCD; median donor age 53 years) underwent 8 h of HOPE following procurement, while paired tissue controls were preserved using static cold storage (SCS). Perfusion was delivered using a pressure-controlled system (15 mmHg, 10 ± 1 °C, VitaSmart®). Perfusate and tissue samples were analyzed for mitochondrial injury, inflammation, and transcriptional responses. Results: HOPE maintained stable flows (70–150 mL/min), delivered high oxygen levels (pO2 ≈ 1000 hPa), and increased tissue ATP levels. Stratification based on perfusate flavin mononucleotide (FMN) release identified grafts with greater Complex I/II injury. HOPE was associated with lower levels of mitochondrial injury markers and inflammatory signals, preserved tissue architecture, and promoted gene expression patterns consistent with metabolic recovery compared with paired SCS tissue controls. Conclusions: These findings suggest that HOPE may serve as a preservation approach that enables metabolic and ischemic injury assessment and may facilitate broader use of deceased donor uteri for transplantation. Full article
(This article belongs to the Special Issue New Advances in Uterus and Ovarian Transplantation: 2nd Edition)
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14 pages, 6489 KB  
Article
Characterization and Phylogenetic Analysis of the Chloroplast Genome of Elaeagnus oxycarpa Schltdl
by Kaidiriye Yusupu, Qiyu Gu, Boqiang Wei, Hui Geng and Li Xiong
Biology 2026, 15(7), 590; https://doi.org/10.3390/biology15070590 - 7 Apr 2026
Viewed by 35
Abstract
Background: Elaeagnus oxycarpa Schltdl. (Elaeagnaceae) is a vital sand-fixing tree species in the arid, semi-arid, and desert regions of China, holding significant ecological and economic value. However, its chloroplast (cp) genome has not been previously characterized. Results: In this study, we sequenced the [...] Read more.
Background: Elaeagnus oxycarpa Schltdl. (Elaeagnaceae) is a vital sand-fixing tree species in the arid, semi-arid, and desert regions of China, holding significant ecological and economic value. However, its chloroplast (cp) genome has not been previously characterized. Results: In this study, we sequenced the complete cp genome of Elaeagnus oxycarpa using Illumina high-throughput sequencing technology. We performed de novo assembly, annotation, and comparative genomic and phylogenetic analyses with six other Elaeagnaceae species. The results revealed a typical quadripartite structure for the E. oxycarpa cp genome, with a total length of 150,567 bp and a GC content of 36.90%. Annotation identified 132 genes, comprising 86 protein-coding genes (PCGs), 38 tRNA genes, and 8 rRNA genes. Codon usage bias analysis indicated a preference for A/U endings, with leucine codons being the most frequent (9.5%). Additionally, 77 simple sequence repeat (SSR) loci were detected, predominantly mononucleotide repeats (71.4%). Comparative genomic analysis demonstrated high sequence conservation among the seven Elaeagnus species, with nucleotide variations primarily concentrated in non-coding regions and intergenic spacers of genes such as rps16, ycf1, and trnC-GCA. These variable regions and SSR loci represent valuable molecular markers for future population genetics and species identification studies on Elaeagnus. Phylogenetic analysis strongly supported the notion that E. oxycarpa and Elaeagnus angustifolia form a sister clade, indicating their close genetic relationship. Conclusions: Our findings provide crucial genomic resources and a theoretical foundation for the species identification and elucidation of the evolutionary history of Elaeagnaceae. Full article
(This article belongs to the Collection Abiotic Stress in Plants and Resilience: Recent Advances)
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16 pages, 1836 KB  
Article
Transcriptome-Wide Identification and Development of SSR Markers for Genetic Diversity Studies in Medicinal Polygonatum Species
by Wenjuan Huang, Hui Wang, Majin Yang, Changhua Ye, Zhen Li and Shengfu Zhong
Int. J. Mol. Sci. 2026, 27(6), 2632; https://doi.org/10.3390/ijms27062632 - 13 Mar 2026
Viewed by 309
Abstract
The genus Polygonatum encompasses numerous species with complex phenotypes, necessitating robust molecular markers for accurate species identification and superior germplasm screening. This study identified and developed SSR markers based on transcriptome analysis of three Polygonatum species to assess the genetic diversity of Polygonatum [...] Read more.
The genus Polygonatum encompasses numerous species with complex phenotypes, necessitating robust molecular markers for accurate species identification and superior germplasm screening. This study identified and developed SSR markers based on transcriptome analysis of three Polygonatum species to assess the genetic diversity of Polygonatum resources. The results showed that a total of 43,217 SSR loci were detected, and 31,703 primer pairs were successfully designed. Characterization of SSR motifs revealed mono-nucleotide repeats (SNRs) were the most frequent (59.45%). Unigenes containing SSRs were annotated across seven databases. In KEGG, 222 pathways were assigned, with genes annotated to carbohydrate metabolism being the most abundant. To validate and apply these markers, 100 primer pairs covering all eight SSR locus types were tested across 21 Polygonatum accessions. Of these, 49 polymorphic markers were identified, revealing high genetic diversity, with average expected heterozygosity (He) and polymorphism information content (PIC) values of 0.763 and 0.718, respectively, alongside significant population differentiation (Fst = 0.307). Cluster analysis grouped 21 accessions into three groups, which correlated with certain agronomic traits. Nine core markers were selected that effectively distinguished six species and intraspecific groups. Notably, the FB-9 marker, associated with polysaccharide biosynthesis, effectively discriminated among six Polygonatum species and also distinguished distinct germplasm resources within P. kingianum var. grandifolium. Overall, the transcriptome-derived SSR markers validated in this study constitute valuable resources for gene function analysis, population genetics research, and variety identification and genetic improvement of Polygonatum. Full article
(This article belongs to the Section Molecular Plant Sciences)
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16 pages, 2175 KB  
Systematic Review
Effects of Nicotinamide Mononucleotide Supplementation on Blood Pressure: A Systematic Review and Meta-Analysis of Randomized Controlled Trials
by Mu Zhang, Yingci Chen, Nan Jiang, Jingjing Zeng, Jianyun Zhang, Chenyang Wu, Yingying Liu, Zizheng Nie, Jun Yang and Shufen Han
Nutrients 2026, 18(6), 890; https://doi.org/10.3390/nu18060890 - 11 Mar 2026
Viewed by 1382
Abstract
Background/Objectives: High blood pressure remains a primary modifiable risk factor for cardiovascular disease. Nicotinamide mononucleotide (NMN) has emerged as a promising supplement; however, its efficacy with respect to blood pressure in humans is unclear. This meta-analysis systematically evaluated the effects of various NMN [...] Read more.
Background/Objectives: High blood pressure remains a primary modifiable risk factor for cardiovascular disease. Nicotinamide mononucleotide (NMN) has emerged as a promising supplement; however, its efficacy with respect to blood pressure in humans is unclear. This meta-analysis systematically evaluated the effects of various NMN supplements on resting systolic blood pressure (SBP) and diastolic blood pressure (DBP) in adults with elevated blood pressure. Methods: A systematic literature search was conducted to identify eligible randomized controlled trials (RCTs) using the databases PubMed/MEDLINE, Scopus, Web of Science, and EBSCO from their inception to 13 December 2025. R software was used to combine the data from the included original trials using a common-effects model. Subgroup analyses were performed based on age, baseline body mass index, geographical location, intervention duration, NMN dosage, and baseline blood pressure. Results: A total of 349 participants from 10 RCTs with 11 intervention arms were included. Compared with the placebo, NMN supplementation was associated with a statistically significant but modest reduction in resting DBP (WMD, −2.15 mmHg; 95% CI: −3.68 to −0.61). In contrast, the reduction in resting SBP was not statistically significant. Notably, subgroup analyses revealed that NMN supplementation resulted in a significant reduction in SBP specifically among participants aged 60 years and older (WMD: −3.94 mmHg; 95% CI: −7.06 to −0.82). Conclusions: Our findings provide preliminary and suggestive evidence that NMN supplementation may be associated with a small reduction in resting DBP and a modest beneficial effect on resting SBP in adults aged 60 years and older. However, the potential of NMN as a viable candidate for early-stage blood pressure management requires confirmation through long-term, large-scale, high-quality RCTs in future clinical studies. Full article
(This article belongs to the Section Clinical Nutrition)
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12 pages, 1137 KB  
Article
Development of Freeze-Dried Hyaluronic Acid Sheets for Healing Oral Mucositis: Influence of Hyaluronic Acid Molecular Weight and Nicotinamide Mononucleotide Loading on Healing Efficacy
by Akiko Tanaka, Takanobu Takata, Hidemasa Katsumi, Yasuhisa Sawai, Hiroyuki Nakano, Chika Yoneto, Kunio Yoneto, Tomoyuki Furubayashi and Toshiyasu Sakane
J. Funct. Biomater. 2026, 17(3), 137; https://doi.org/10.3390/jfb17030137 - 10 Mar 2026
Viewed by 464
Abstract
Oral mucositis frequently develops during radiotherapy or chemotherapy for head and neck cancer and is characterized by severe pain and impaired eating and speech. It was previously demonstrated that freeze-dried hyaluronic acid (HA) sheets effectively promote the healing of oral mucosal ulcers. This [...] Read more.
Oral mucositis frequently develops during radiotherapy or chemotherapy for head and neck cancer and is characterized by severe pain and impaired eating and speech. It was previously demonstrated that freeze-dried hyaluronic acid (HA) sheets effectively promote the healing of oral mucosal ulcers. This study aimed to optimize the HA sheet formulation by evaluating the effects of HA molecular weight and nicotinamide mononucleotide (NMN) loading on therapeutic efficacy. HA sheets were prepared using HA with four different molecular weights (50, 350, 800, and 2000 kDa), and their therapeutic effects were evaluated in an animal oral ulcer model using 6-week-old male Syrian hamsters. Among the formulations tested, the 800 kDa HA sheet exhibited the greatest healing efficacy, and it showed an excellent balance between buccal retention and the sustained release of NMN for the treatment of oral mucositis. In vitro cytotoxicity assays confirmed that HA, with or without NMN, was non-toxic and suitable for local applications. These findings indicate that HA sheets, particularly those composed of 800 kDa HA, may represent a promising and biocompatible mucoadhesive material for the delivery of NMN and the local treatment of oral mucositis associated with head and neck cancer. Full article
(This article belongs to the Special Issue 15th Anniversary of JFB—Advanced Biomaterials for Drug Delivery)
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13 pages, 2578 KB  
Article
Administration of Nicotinamide Mononucleotide Mitigates the HIV Nef-Induced Metabolic and Pathological Changes in the Heart
by Olena Kondrachuk, Esther Nakhungu, Gbenga Ogundipe, Nishit Tailor, Pierce Ciccone, Kim Hong, Anvita Gadiraju, Yuka Kimura, Artemis Zi, Sumaya Yusuf, Aya Alkousa, Sarah Nguyen, Rithvik Rajkumar, Jaycee Do, Jay Rappaport and Manish Kumar Gupta
Cells 2026, 15(5), 444; https://doi.org/10.3390/cells15050444 - 1 Mar 2026
Viewed by 650
Abstract
Due to the application of antiretroviral therapy, HIV has become a manageable chronic disease, and people living with HIV/AIDS (PLWHA) experience several comorbidities, including cardiovascular disease. Although antiretroviral therapy suppresses the viral load to an undetectable level, HIV proteins can still be detected [...] Read more.
Due to the application of antiretroviral therapy, HIV has become a manageable chronic disease, and people living with HIV/AIDS (PLWHA) experience several comorbidities, including cardiovascular disease. Although antiretroviral therapy suppresses the viral load to an undetectable level, HIV proteins can still be detected in the circulation and in different organs. In our previous study, we found that the expression of the Nef protein causes cardiac dysfunction and heart failure in a transgenic mouse model. We also observed inhibition of autophagy along with the upregulation of the senescence marker Bcl2. To further understand the metabolic changes related to Nef in cardiac tissue, we examined nicotinamide adenine dinucleotide (NAD) metabolism in the heart. Our metabolic study with cardiac tissue revealed that Nef expression decreases NAD+ levels in the heart. Additionally, we explored whether replenishing cellular NAD+ could be a potential therapeutic target for HIV-associated cardiovascular disease. Interestingly, our study found that NMN treatment can improve cellular autophagy, decrease the senescence marker Bcl2, and reduce fibrosis in the heart. Overall, our study suggests that NMN could serve as a promising therapeutic molecule for the treatment of HIV-associated cardiovascular comorbidities. Full article
(This article belongs to the Special Issue Insight into Cardiomyopathy)
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19 pages, 2400 KB  
Article
Nicotinamide Mononucleotide Modulates Endothelin-1 via NR4A1 and Histone Modifications in Canine Intestinal Epithelial Cells
by Xudong Guo, Chuyang Zhu, Saber Y. Adam, Cuipeng Zhu, Hao-Yu Liu and Demin Cai
Animals 2026, 16(4), 591; https://doi.org/10.3390/ani16040591 - 13 Feb 2026
Viewed by 548
Abstract
This work conducted a transcriptome analysis of canine intestinal epithelial cells (cIECs) treated with nicotinamide mononucleotide (NMN), a physiologically active nucleotide with a pyridine base known for its anti-aging and anti-inflammatory effects. In our experiment, cIECs were cultured and segregated into a control [...] Read more.
This work conducted a transcriptome analysis of canine intestinal epithelial cells (cIECs) treated with nicotinamide mononucleotide (NMN), a physiologically active nucleotide with a pyridine base known for its anti-aging and anti-inflammatory effects. In our experiment, cIECs were cultured and segregated into a control group (Ctrl) and an NMN-treated group. The finding demonstrated that NMN significantly affects cell proliferation in cIECs in comparison to the Ctrl. The transcriptome analysis indicated a high enrichment of genes associated with the cell cycle, proliferation, cellular senescence, and inflammatory pathways in NMN-treated cIECs, showing that NMN has the capacity to modify these biological processes. Compared to the Ctrl group, NMN treatment significantly increased ATP, SOD, CAT and GSH levels and decreased the activities of ROS and MDA. NMN treatment also significantly increased the activity of the relative complex I, III and V enzymes compared to the Ctrl group. Furthermore, the expression of MAPK13, EDN1, TNFAIP6, TNFSF15 and SLC7A11 were decreased significantly, while ACOX2, CPT1C, CCNA1 and CCNE1 were increased significantly in NMN-5μM treatment compared to Ctrl. NMN-treated significantly decreased the expression of Hdac2, Hdac6 and Hdac8, while increasing the expression of Kdm5a, Kdm5b and Kdm5c compared to the Ctrl group. Additionally, ChIP-qPCR use discovered that NMN-treatment significantly downregulated the enrichment of EDN-1 at target loci of NR4A1, SRC1, P300, Pol II and Ser5- Pol II compared to the Ctrl group. Expression of the NR4A1 gene suggests that its exert in biological activities by inhibiting inflammatory responses and anti-aging pathways. Then, we detected the transcriptional activation linked histone markers and found that H3K23ac and H3K27ac were significantly downregulated, while H3K27me3 was significantly upregulated in the NMN-treatment compared to the Ctrl group. We conclude that NMN regulates EDN-1 expression in cIECs through mechanisms involving NR4A1 and histone modifications, highlighting its potential role in canine intestinal health. Full article
(This article belongs to the Section Companion Animals)
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15 pages, 1948 KB  
Article
The Complete Chloroplast Genome Sequence of Pseudolysimachion pyrethrinum var. gasanensis
by Sang Heon Kim, Ji Hun Yi, Jin-Woo Kim, Wonwoo Cho and Ji Young Jung
Horticulturae 2026, 12(2), 196; https://doi.org/10.3390/horticulturae12020196 - 4 Feb 2026
Viewed by 413
Abstract
Pseudolysimachion pyrethrinum var. gasanensis (Gasan spike speedwell) is a valuable Korean endemic variety with significant horticultural potential. Despite its morphological distinctiveness, its taxonomic status and evolutionary position have remained a subject of debate. In this study, we assembled and characterized the first complete [...] Read more.
Pseudolysimachion pyrethrinum var. gasanensis (Gasan spike speedwell) is a valuable Korean endemic variety with significant horticultural potential. Despite its morphological distinctiveness, its taxonomic status and evolutionary position have remained a subject of debate. In this study, we assembled and characterized the first complete chloroplast (cp) genome of P. pyrethrinum var. gasanensis using high-throughput sequencing. The complete plastome is 152,251 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC) region (83,191 bp), a small single-copy (SSC) region (17,690 bp), and two inverted repeats (IRs) (25,685 bp each). The genome contains 133 genes, including 88 protein-coding, 37 tRNA, and 8 rRNA genes. Genomic analysis identified 42 simple sequence repeat (SSR) units across 38 distinct loci, predominantly mononucleotide A/T motifs, which serve as potential molecular markers for variety-level identification. Selective pressure analysis revealed that the majority of protein-coding genes are under strong purifying selection (Ka/Ks < 1.0), emphasizing the evolutionary stability of the plastome. Comparative analysis of IR boundaries using IRscope revealed a high degree of structural conservation among Pseudolysimachion species, with minor variations at the junction sites. Phylogenetic analysis based on 18 complete plastomes strongly supported the monophyly of the genus Pseudolysimachion (Bootstrap = 100%) and placed P. pyrethrinum var. gasanensis as a sister to the European P. spicatum. These genomic resources provide a foundational tool for the molecular breeding, systematic conservation, and sustainable utilization of this endemic variety, while offering clarity to its taxonomic classification within the tribe Veroniceae. Full article
(This article belongs to the Special Issue Genetic Innovation and Breeding in Ornamental Plants)
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15 pages, 17617 KB  
Article
Comparative Chloroplast Genome Analyses Reveal a Fine-Scale Phylogenetic Framework and Cryptic Diversity in the Fagopyrum dibotrys Complex (Polygonaceae)
by Yi-Ming Wei, Xiao-Ting Xie, Shu-Qing Lei and Bo Li
Genes 2026, 17(2), 149; https://doi.org/10.3390/genes17020149 - 28 Jan 2026
Viewed by 485
Abstract
Background/Objectives: The Fagopyrum dibotrys complex is a specialized high-altitude lineage in southwestern China with medicinal and breeding potential, but species delimitation remains unresolved. Methods: We sequenced 26 complete chloroplast genomes from the Hengduan Mountains to the Yunnan–Guizhou Plateau, analyzing genomic structures, variation patterns, [...] Read more.
Background/Objectives: The Fagopyrum dibotrys complex is a specialized high-altitude lineage in southwestern China with medicinal and breeding potential, but species delimitation remains unresolved. Methods: We sequenced 26 complete chloroplast genomes from the Hengduan Mountains to the Yunnan–Guizhou Plateau, analyzing genomic structures, variation patterns, and phylogenetic relationships. Results: All genomes exhibited typical quadripartite structures (152,213–160,302 bp), containing 133 genes (88 protein-coding, 8 rRNA, and 37 tRNA) with GC content of 37.9%. Collinearity analysis revealed highly conserved structures without structural rearrangements. Variations were concentrated in the large single-copy(LSC)/small single-copy(SSC) non-coding regions, with hotspots at ycf4–cemA and ndhF–rpl32. Codon usage showed an A/U bias, with leucine being most abundant and cysteine the least. Simple sequence repeats (SSRs) were predominantly mononucleotide repeats enriched in the LSC, while long repeats were mainly palindromic/forward. Maximum likelihood and Bayesian phylogenies consistently resolved three clades: Tibetan high-altitude specialists, limestone specialists, and a widespread Hengduan–Yunnan–Guizhou clade, with geographic clustering indicating isolation as the primary differentiation driver. Conclusions: This study refines the phylogenetic resolution of the F. dibotrys complex and identifies informative chloroplast markers, providing a genomic foundation for reliable species delimitation, evolutionary inference, and conservation management of this medicinal lineage. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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19 pages, 3239 KB  
Article
Cyclic-FMN Is a Detectable, Putative Intermediate of FAD Metabolism
by Luxene Belfleur, Juha P. Kallio, Wito Richter, Natalie R. Gassman, Mathias Ziegler and Marie E. Migaud
Biomolecules 2026, 16(1), 175; https://doi.org/10.3390/biom16010175 - 21 Jan 2026
Viewed by 681
Abstract
Free flavin adenine dinucleotide (FAD) is metabolized to flavin mononucleotide (FMN) and adenine monophosphate (AMP) by hydrolases and to 4′,5′-cyclic phosphoriboflavin (cFMN) and AMP by the triose kinase FMN cyclase (TKFC). Yet, the lack of analytical standards for cFMN might have resulted in [...] Read more.
Free flavin adenine dinucleotide (FAD) is metabolized to flavin mononucleotide (FMN) and adenine monophosphate (AMP) by hydrolases and to 4′,5′-cyclic phosphoriboflavin (cFMN) and AMP by the triose kinase FMN cyclase (TKFC). Yet, the lack of analytical standards for cFMN might have resulted in the incidence of cFMN in biological specimens being underreported. To address this shortcoming, cFMN was synthesized from either FMN or FAD. The optimization of the FAD to cFMN reaction conditions revealed that an equimolar ratio of ZnSO4 and FAD yielded pure cFMN upon the precipitation of AMP-Zn salts. cFMN is stable to aqueous acidic and basic conditions and is readily extracted from biological samples for detection by liquid chromatography coupled with mass spectrometry. Although cFMN is hydrolyzed by liver tissue extracts to FMN and riboflavin, the mechanisms for this conversion remain elusive. Full article
(This article belongs to the Special Issue Feature Papers in the Natural and Bio-Derived Molecules Section)
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19 pages, 6983 KB  
Article
Assembly, Characterization and Comparative Analysis of the Complete Mitogenome of Small-Leaved Eriobotrya seguinii (Maleae, Rosaceae)
by Muhammad Idrees, Fardous Mohammad Safiul Azam, Meng Li, Zhiyong Zhang, Hui Wang and Yunyun Lv
Genes 2026, 17(1), 107; https://doi.org/10.3390/genes17010107 - 20 Jan 2026
Cited by 1 | Viewed by 386
Abstract
Background. Eriobotrya seguinii (Lév.) Cardot ex Guillaumin (Rosaceae, Maleae) is native to China and inhabits various altitudes within the subtropical biome of the Yunnan-Guizhou Plateau. The complexity of the plant mitogenome has impeded a systematic description of this species, leading to a limited [...] Read more.
Background. Eriobotrya seguinii (Lév.) Cardot ex Guillaumin (Rosaceae, Maleae) is native to China and inhabits various altitudes within the subtropical biome of the Yunnan-Guizhou Plateau. The complexity of the plant mitogenome has impeded a systematic description of this species, leading to a limited understanding of its evolutionary position. Methods. In this study, we constructed, annotated, characterized, and compared the complete E. seguinii mitogenome with previously reported Eriobotrya japonica. Results. The E. seguinii mitogenome exhibited a typical circular architecture, spanning 372,899 bp in length, with a GC content of 46%, making it the smallest and highest GC content of any known Eriobotrya species. It encodes 71 unique genes, comprising 47 protein-coding genes, 20 transfer RNA (tRNA) genes, and 4 ribosomal RNA (rRNA) genes. The genome contains rich repetitive sequences, with mononucleotides, A/T bias, and forward and palindromic repeats being the most prevalent. The predominant codons were GCU (Ala) and UAU (Tyr), with frequencies of 1.54 and 1.53, respectively. Thirteen genes (atp9, atp6, atp1, rps14, sdh4, sdh3, rps12, rnaseH, nad1, nad6, nad7, rpl16, and mttB) demonstrated high Pi values, ranging from 0.84 to 1. The evolutionary lineage of E. seguinii was explored using mitogenome data from 19 genera within the Rosaceae family, revealing that Eriobotrya species are monophyletic and closely related to E. japonica (MN481990). Conclusions. Understanding the mitogenome characteristics of E. seguinii enhances our understanding of its genesis and classification based on mitochondrial genome data. This study provides additional evidence for future research on the evolutionary relationships among species in the Rosaceae family. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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12 pages, 2208 KB  
Article
The Restorative Effects of Electron Mediators on the Formation of Electroactive Biofilms in Geobacter sulfurreducens
by Zheng Zhuang, Yue Shi, Guiqin Yang and Li Zhuang
Microorganisms 2026, 14(1), 214; https://doi.org/10.3390/microorganisms14010214 - 17 Jan 2026
Viewed by 361
Abstract
Electroactive biofilms (EABs) are essential for the performance of bioelectrochemical systems (BESs), but their formation in Geobacter, critically on conductive pili and exopolysaccharides, limits application under conditions where these components are deficient. Herein, we investigated the restorative effects of exogenous flavin mononucleotide [...] Read more.
Electroactive biofilms (EABs) are essential for the performance of bioelectrochemical systems (BESs), but their formation in Geobacter, critically on conductive pili and exopolysaccharides, limits application under conditions where these components are deficient. Herein, we investigated the restorative effects of exogenous flavin mononucleotide (FMN) on EAB formation and extracellular electron transfer (EET) in two defective mutants of Geobacter sulfurreducens: the pili-deficient PCAΔ1496 and exopolysaccharides-deficient PCAΔ1501. Results show that FMN significantly promoted biofilm thickness in PCAΔ1496 (250%) and PCAΔ1501 (33%), while boosting maximum current outputs by 175-fold and 317.7%, respectively. Spectroscopic and electrochemical analyses revealed that FMN incorporates into biofilms, binds to outer membrane c-type cytochromes (c-Cyts), and enhances electron exchange capacity. Differential pulse voltammetry further confirmed that FMN did not exist independently in the biofilm but bound to outer membrane c-Cyts as a cofactor. Collectively, exogenous FMN plays dual roles (electron shuttle and cytochrome-bound cofactor) in defective Geobacter EABs, effectively restoring biofilm formation and enhancing EET efficiency. This study expands the understanding of the formation mechanism of Geobacter EABs and provides a novel strategy for optimizing BES performance. Full article
(This article belongs to the Section Biofilm)
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15 pages, 1884 KB  
Article
Genomic Characterization and Phylogenetic Relationships of Procypris rabaudi Revealed by Whole-Genome Survey Analysis
by Xiaolu Han, Renhui Luo, Qi Liu, Zengbao Yuan and Wenping He
Animals 2026, 16(2), 246; https://doi.org/10.3390/ani16020246 - 14 Jan 2026
Viewed by 417
Abstract
Procypris rabaudi, a member of the Cyprinidae family and genus Procypris, has been designated as a national second-class protected wildlife species in China due to a significant decline in its wild populations. Understanding its genomic characteristics and mitochondrial genome structure is [...] Read more.
Procypris rabaudi, a member of the Cyprinidae family and genus Procypris, has been designated as a national second-class protected wildlife species in China due to a significant decline in its wild populations. Understanding its genomic characteristics and mitochondrial genome structure is crucial for germplasm conservation and systematic classification. In this study, we utilized high-throughput sequencing to investigate the genome of P. rabaudi. The genome size was 1.5 Gb, with a heterozygosity rate of 0.44% and 61.47% of repetitive sequences. We identified 1,151,980 simple sequence repeats (SSRs), with mononucleotide repeats being the most abundant at 55.34%. The complete mitochondrial genome was assembled with 16,595 bp length. A phylogenetic tree constructed from 13 mitochondrial protein-coding genes indicated that genus Procypris was most closely related to genus Luciocyprinus and formed a monophyletic group with Cyprinus, Carassioides, and Carassius. Pairwise Sequentially Markovian Coalescent (PSMC) analysis revealed a rapid population expansion prior to the Last Interglacial Period, followed by a decline after reaching its peak during Last Glacial Period. Notably, P. rabaudi exhibited a two-peak demographic pattern during both the Last Glacial Period. These genomic data provide valuable resources for the conservation of P. rabaudi germplasm and for future studies on cyprinid classification and evolution. Full article
(This article belongs to the Special Issue Omics in Economic Aquatic Animals: Second Edition)
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32 pages, 17231 KB  
Article
Comparative Chloroplast Genomics of Acanthaceae with a Focus on Medicinal Plant Thunbergia grandiflora Roxb.: Unveiling Adaptive Evolution, Diversification Mechanisms and Phylogenetic Relationships
by Yanlin Zhao, Wei Wu, Jinzhi Chen, Qingqing Lin, Chang An, Guoqiang Chen, Yanfang Zheng, Mingqing Huang and Yanxiang Lin
Biology 2026, 15(2), 137; https://doi.org/10.3390/biology15020137 - 13 Jan 2026
Viewed by 884
Abstract
The medicinally and ornamentally valuable genus Thunbergia faces taxonomic uncertainty, while certain Acanthaceae species are threatened by habitat loss, underscoring the need for chloroplast genome studies to support conservation efforts. The chloroplast genome of Thunbergia grandiflora was sequenced and assembled. Additionally, 28 Acanthaceae [...] Read more.
The medicinally and ornamentally valuable genus Thunbergia faces taxonomic uncertainty, while certain Acanthaceae species are threatened by habitat loss, underscoring the need for chloroplast genome studies to support conservation efforts. The chloroplast genome of Thunbergia grandiflora was sequenced and assembled. Additionally, 28 Acanthaceae species with significant medicinal value were selected for comparative genomic analysis. Based on the chloroplast genome data of Acanthaceae species, this study conducted phylogenetic and comparative evolutionary analyses. The results preliminarily support a systematic framework that divides Acanthaceae into eight tribes within five subfamilies. Concurrently, the study revealed significant inverted repeat (IR) region structural variations. A clear correspondence was observed between the contraction of IR length and the topological structure of the phylogenetic tree. In particular, species within the genus Strobilanthes exhibited significant contraction in their IR regions, which corresponded consistently with their tendency to cluster into an independent clade in the phylogenetic tree. This suggests that structural variation in the IR regions may be closely associated with the evolutionary divergence of this group. SSR analysis revealed a prevalent mononucleotide A/T repeat dominant pattern across Acanthaceae species. Furthermore, selection pressure analysis detected positive selection acting on multiple key genes, including rbcL, rps3, rps12, cemA, and ycf4, suggesting that these genes may play important roles in the adaptive evolution of Acanthaceae. This study reveals that the chloroplast genomes of Acanthaceae exhibit distinctive characteristics in phylogenetic architecture, dynamic variations in IR regions, and adaptive evolution of key genes, providing important molecular insights for understanding the mechanisms underlying species diversity and for the conservation of medicinal resources within this family. Full article
(This article belongs to the Special Issue Young Researchers in Conservation Biology and Biodiversity)
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Review
Precision Biomanufacturing with Lactic Acid Bacteria: From Ancestral Fermentations to Technological Innovation and Future Prospects for Next-Generation Functional Foods
by Ana Yanina Bustos and Carla Luciana Gerez
Fermentation 2026, 12(1), 33; https://doi.org/10.3390/fermentation12010033 - 6 Jan 2026
Cited by 1 | Viewed by 1726
Abstract
The context of food science and biotechnology is undergoing a profound transformation, characterized by an evolutionary shift from conventional large-scale fermentation to precision biomanufacturing, positioning Lactic Acid Bacteria (LAB) as versatile cellular biofactories for next-generation functional foods. This review analyzes the evolutionary role [...] Read more.
The context of food science and biotechnology is undergoing a profound transformation, characterized by an evolutionary shift from conventional large-scale fermentation to precision biomanufacturing, positioning Lactic Acid Bacteria (LAB) as versatile cellular biofactories for next-generation functional foods. This review analyzes the evolutionary role of LAB, their utilization as probiotics, and the technological advances driving this shift. This work also recognizes the fundamental contributions of pioneering women in the field of biotechnology. The primary methodology relies on the seamless integration of synthetic biology (CRISPR-Cas editing), Multi-Omics analysis, and advanced Artificial Intelligence/Machine Learning, enabling the precise, rational design of LAB strains. This approach has yielded significant findings, including successful metabolic flux engineering to optimize the biosynthesis of high-value nutraceuticals such as Nicotinamide Mononucleotide and N-acetylglucosamine, and the development of Live Biotherapeutic Products using native CRISPR systems for the expression of human therapeutic peptides (e.g., Glucagon-like Peptide-1 for diabetes). From an industrial perspective, this convergence enhances strain robustness and supports the digitalized circular bioeconomy through the valorization of agri-food by-products. In conclusion, LAB continue to consolidate their position as central agents for the development of next-generation functional foods. Full article
(This article belongs to the Special Issue Women’s Special Issue Series: Fermentation)
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