Search Results (1,555)

The research aimed to examine the effects of fermentation and enzymatic hydrolysis of cottonseed protein on body weight changes, serum biochemistry, rumen function, intestinal health, and liver metabolism of suckling lambs. A total of twelve 7-day-old healthy male Hu sheep body weights (5.27 ± 0.48 kg) were randomly distributed into two groups. Starter feed regimens containing microbial fermentation of cottonseed protein (MFCP) or enzymatic hydrolysate of cottonseed protein (EHCP) were administered to lambs during the initial 60-day period. Results showed that compared with EHCP group, the serum glucose, ruminal acetic, propionic, butyric and valeric acids concentrations, jejunal immunoglobulin G content and mRNA expressions of Claudin 1 and Occludin, as well as the relative abundance of actinobacteriota and pseudoscardovia in the rumen were significantly increased in the MFCP group (p < 0.05), whereas an opposite trend was observed in the jejunum. α-amylase and trypsin enzymatic activities were observed between the two groups. Relative to EHCP treatment, the MFCP group exhibited 69 elevated and 103 reduced hepatic metabolites, and these metabolites displayed distinct enrichment patterns within specific metabolic networks, including fructose and mannose metabolism (p = 0.003), arachidonic acid metabolism (p = 0.017), glycerophospholipid metabolism (p = 0.036), and the cAMP signaling pathway (p = 0.047). Overall, microbial fermentation of cottonseed protein may be beneficial for strengthening intestinal barrier function and facilitating hepatic lipid metabolism and immune regulation, while enzymatic hydrolysis of cottonseed protein enhances gastrointestinal digestive enzyme activity, thereby promoting nutrient digestion of suckling lambs. Full article

Despite being low-resource environments, sandy beaches can contain diverse bacterial assemblages. In this study we examined the spatial heterogeneity of bacterial communities in sand on a beach on the Mississippi Gulf Coast, USA. 16S ribosomal RNA gene sequencing was used to characterize bacterial communities in surface sand along 10 m transects from dry sand towards the upper beach to fully submerged sand, as well as up to 0.4 m deep into the sand. There were clear gradients in bacterial community structure based on position on the beach and depth, and community richness and diversity was greater in moist sand subject to tidal influence than drier sand. Bacterial communities in sand higher up the beach were characterized by members of the phyla Bacillota and Actinomycetota, whereas there was an increased presence of picocyanobacteria (phylum Cyanobacteriota) in sand closer to the water and greater diversity overall. Along with gradients in community structure, microbial activity also showed spatial patterns, with microbial extracellular enzyme activity being greatest in surface sand at intermediate positions along the beach transects that were subject to tidal influences but not fully submerged. This research supports the idea of beaches containing diverse bacterial communities and demonstrates that the existence of gradients in beach environments means that these communities show clear patterns in their spatial distribution. Full article

Despite our preliminary research about the inductive effect of exogenous abscisic acid (ABA) on the weed-suppressive activity of rice in a hydroponic system, there is a lack of knowledge regarding the induction mechanism for ABA application to enhance the ability for weed control underground. Here, two pot experiments using rice–barnyard grass mixed culture were conducted to investigate the effects of exogenous ABA treatment on weed inhibition strategies in both allelopathic rice PI312777 (PI) and non-allelopathic rice Lemont (Le). The largest observed weed inhibition changes in the two rice accessions both occurred with the 9 μmol/L ABA treatment. ABA induction on PI significantly increases the inhibitory effect on the plant height of barnyard grass with root contact and root segregation by 25.7% and 19.1%, respectively, with 23.5% increases observed in Le rice with root contact and no significant increases in plants with root segregation with nylon mesh. ABA induction also significantly increased the root distribution in the soil of Le. Compared with the uninduced group, ABA treatment significantly elevated the total amounts of reversibly adsorbed phenolic acids in the two soil layers of PI and the irreversibly adsorbed phenolic acids in Le soil layers. Furthermore, exogenous ABA could change the bacterial composition in rhizosphere soil of the two rice accessions, with the change in the species composition in the rhizosphere soil of the allelopathic rice PI being greater. Importantly, the bacterial compositions (Anaerolineales, Bacteroidales, and Myxococcale) in the PI rhizosphere soil of rice induced by ABA were more related to the contents of reversibly adsorbed phenolic acids in the soil. However, the core bacterial compositions that promote plant growth (Sphingomonadales, Cyanobacteriales, and Rhizobiales) in the Le rhizosphere soil were more related to the contents of irreversibly adsorbed phenolic acids in the soil. These findings suggested that the ABA induction mainly changed root distribution and core bacterial compositions in Le to enhance resource competition, whereas it stimulated the release of reversibly adsorbed phenolic acids to modulate the specific bacterial compositions in rhizosphere soil of PI and to strengthen allelopathic effects. Full article

Coastal saltmarsh wetlands play a pivotal role in global carbon and nitrogen cycling, yet the vertical distribution characteristics of sediment carbon and nitrogen and their regulatory mechanisms remain uncertain. Microbial biomass carbon (MBC) and nitrogen (MBN) serve as critical indicators of ecosystem functioning, representing the most labile organic fractions that directly mediate biogeochemical processes in coastal wetlands. We investigated Yalu River Estuary coastal wetlands in the northern Yellow Sea. Sediment cores (0–100 cm depth) were collected and stratified into 20-cm intervals to analyse physicochemical properties and carbon–nitrogen indicators, enabling quantitative assessment of vertical distribution patterns and environmental drivers. The key findings are as follows: (1) Both microbial biomass carbon (MBC) and nitrogen (MBN) exhibited significant depth-dependent decreases, with MBC decreasing sharply by 45% (90.42 to 60.06 mg/kg) in the 40–60 cm layer and MBN decreasing by 50% (7.50 to 3.72 mg/kg) in the 80–100 cm layer. Total carbon (TC) peaked in the 40–60 cm layer (6.49 g/kg), whereas total nitrogen (TN) continuously decreased (from 0.51 (surface) to 0.24 g/kg (bottom)). (2) Depth-specific controls were identified: Surface layers (0–20 cm) were governed by tidal scouring (causing TC loss) and pH buffering; subsurface layers (20–40 cm) were constrained by moisture content (MC) and bulk density (BD), with partial mitigation by labile TC; and deeper layers (40–100 cm) were dominated by chemical factors exhibiting TN limitation and high electrical conductivity (EC). Understanding these microbial biomass dynamics is particularly crucial for predicting how coastal wetlands will respond to climate change and anthropogenic disturbances, as MBC and MBN serve as sensitive early-warning indicators of ecosystem health. Notably, MBC and MBN in northern Yellow Sea coastal wetlands are regulated primarily by physical—biological interactions in surface sediments and chemical stressors in deeper layers, providing crucial theoretical foundations for precise wetland carbon sink assessment and sustainable ecosystem management. Full article

Four human sialidases (hNEUs, E.C 3.2.1.18) have been identified. Each is an exosialidase identified as either NEU1, NEU2, NEU3, or NEU4. They exhibit differences in structure, subcellular distribution, substrate specificity, and the diseases with which they are associated. Similarly, microbial sialidases (NAs) may catalyze the release of sialyl residues from the same sialoglycoconjugates as hNEUs, even though they have low sequence homology with human NEUs. Use of sequence homology, plus the crystalline structure of human NEU2, has provided researchers with the basis for developing inhibitors that may differentiate between them. While microbial-induced diseases that use sialidase to complete their infectious cycle have been the driving force behind interrogation of possible NA inhibitors, errors affecting expression of functional hNEUs and their correlation with clinical problems has led to study of the sialidases per se. Information gained about sialidase structure, function, mechanism of action, mutations affecting expression, and their role(s) in disease, has provided the information about the different sialidases needed for development of specific therapies. Full article

Pasteurized colostrum has significantly contributed to improving the health and growth of newborn calves by reducing total bacterial count. However, previous research on animal responses to pasteurized colostrum has primarily focused on physiological functioning and production performance, especially during the preweaning period, with limited attention to any postweaning effects from the feeding of pasteurized colostrum at birth. We conducted a comprehensive investigation into the growth, health, blood immunity, and microbiota responses of dairy calves in these two groups from birth to 180 d of age. In this study, a total of 32 healthy female Holstein calves [mean birth weight = 39.8 ± 1.22 kg (mean ± standard deviation)] were selected and divided into two groups (n = 16; fed either pasteurized or unpasteurized colostrum at birth). The results demonstrated that calves fed pasteurized colostrum exhibited enhanced growth performance as indicated by higher body weight (BW) and average daily gain (ADG) compared to those fed unpasteurized colostrum (p < 0.05). Calves fed pasteurized colostrum displayed higher lymphocyte ratio (W-SCR) and platelet distribution width (PDW), along with lower neutrophil ratio (W-LCR) and neutrophil count (W-LCC) (p < 0.05). Additionally, substantial differences were identified in microbial richness and diversity between the pasteurized and unpasteurized colostrum-fed groups (p < 0.05). Distinct microbial communities were observed in the ruminal and fecal regions (p < 0.05), and we detected shared beneficial microbiota (Alloprevotella, Parabacteroides, and unidentified_Prevotellaceae) and metabolic functions (metabolism of energy, amino acids, and glycan) in both gut regions of the pasteurized group. Furthermore, our study revealed intricate and robust interactions among microbiota, volatile fatty acid (VFA) and blood indicators (|r| > 0.5 and p < 0.05). In conclusion, the findings in the present experiment suggest that the positive effects from d 0 pasteurized colostrum feeding may be seen up to d 180, including improved growth performance, health, and blood immunity, and these may be attributed to modifications in microbiota development induced by pasteurized colostrum. Full article

This essay proposes a transdisciplinary framework that positions cooperation as a foundational principle for ecosystem stewardship in the Anthropocene. Drawing from microbial ecology, evolutionary theory, and sustainability science, we argue that cooperation, rather than competition, is a robust and scalable strategy for resilience across biological and institutional systems. In particular, microbial behaviors such as biofilm formation, quorum sensing, and horizontal gene transfer are especially pronounced in extreme environments, where cooperation becomes essential for survival. These strategies serve as functional analogues that illuminate the structural logics of resilience: interdependence, redundancy, distributed coordination, and adaptation. As the Anthropocene progresses toward increasingly extreme conditions, including potential “Hothouse Earth” scenarios driven by climate disruption, such ecological heuristics offer concrete insights into how human institutions can adapt to stress and uncertainty. Rather than reiterating familiar calls for hybrid governance, we use microbial cooperation as a heuristic to reveal the functional architecture already present in many resilient governance practices. These microbial strategies emerging from life in extreme environments demonstrate how interdependence, redundancy, and distributed coordination can create system resilience and sustainability in the long run. By translating microbial survival strategies into institutional design principles, this framework reframes ecosystem stewardship not as a normative ideal, but as an ecological imperative grounded in the evolutionary logic of cooperation. Full article

Toxoplasma gondii is a widely distributed intracellular parasite that disrupts host immune and metabolic homeostasis. Although accumulating evidence highlights the role of gut microbiota in parasitic infections, the effects of acute T. gondii infection on host gut microbial ecology remain poorly understood. In this study, metagenomic sequencing technology was used to systematically analyze the composition and functional alterations of the ileal microbiota in BALB/c mice on day 10 post-infection. Compared to uninfected controls, T. gondii infected mice exhibited a significant reduction in microbial diversity and a pronounced shift in community structure. Notably, there was an expansion of Proteobacteria, particularly the Enterobacteriaceae family, alongside a marked decline in beneficial taxa such as Actinobacteria and Bacillota. Functional annotation using the KEGG and CAZy databases revealed enrichment of metabolic pathways related to glycolysis/gluconeogenesis, O-antigen nucleotide sugar biosynthesis, bacterial secretion systems, and biofilm formation-Escherichia coli in the infected microbiota. These findings provide novel insights into the dysbiosis of gut microbiota and host-microbe interactions during acute T. gondii infection. Full article

Improving the anaerobic digestion (AD) of swine manure is crucial for sustainable waste-to-energy systems, given its high organic load and process instability risks. This study examined the combined effects of substrate-to-inoculum ratio (SIR, 0.1–3.2) and magnetite-mediated direct interspecies electron transfer on biogas production, effluent quality, and microbial community dynamics. The highest methane yield (262 ± 10 mL CH₄/g COD) was obtained at SIR 0.1, while efficiency declined at higher SIRs due to acid and ammonia accumulation. Magnetite supplementation significantly improved methane yield (up to a 54.1% increase at SIR 0.2) and reduced the lag phase, particularly under moderate SIRs. Effluent characterization revealed that low SIRs induced elevated soluble COD (SCOD) levels, attributed to microbial autolysis and extracellular polymeric substance release. Furthermore, magnetite addition mitigated SCOD accumulation and shifted molecular weight distributions toward higher fractions (>15 kDa), indicating enhanced microbial activity and structural polymer formation. Microbial analysis revealed that magnetite-enriched Syntrophobacterium and Methanothrix promoted syntrophic cooperation and acetoclastic methanogenesis. Diversity indices and PCoA further showed that both SIR and magnetite significantly shaped microbial structure and function. Overall, an optimal SIR range of 0.2–0.4 under magnetite addition provided a balanced strategy for enhancing methane recovery, effluent quality, and microbial stability in swine manure AD. Full article

Phytoremediation is widely acknowledged as a viable method for soil remediation; however, its efficacy remains limited in soils co-polluted with petroleum hydrocarbons and heavy metals. To overcome this constraint, the present study explored an innovative approach utilizing ferrate-modified biochar (FeBC) to augment phytoremediation efficiency. Experimental findings revealed that ferrate treatment markedly modified the physicochemical characteristics of biochar, yielding thinner, smoother-surfaced structures with pronounced iron enrichment. At a 5% application rate alongside ryegrass cultivation, FeBC exhibited superior remediation performance, achieving 52.0% degradation of petroleum hydrocarbons (notably within the meso-aggregate fraction) and a 19.2% decline in zinc bioavailability via immobilization, thereby reducing zinc uptake in ryegrass tissues. Furthermore, FeBC amendment induced significant shifts in rhizosphere soil biochemistry and microbial ecology, characterized by diminished catalase activity but elevated urease and alkaline phosphatase activities. Phospholipid fatty acid profiling indicated a substantial rise in bacterial biomass (encompassing both Gram-positive and Gram-negative groups), particularly in meso- and micro-aggregates, whereas soil bacterial α-diversity declined markedly, accompanied by distinct compositional changes across aggregate size fractions. These results offer mechanistic insights into the synergistic interaction between FeBC and ryegrass in co-contaminated soil rehabilitation, the aggregate-dependent distribution of remediation effects, and microbial community adaptations to FeBC treatment. Collectively, this study advances the understanding of ferrate-modified biochar’s role in phytoremediation enhancement and clarifies its operational mechanisms in petroleum-zinc co-contaminated soil systems. Full article

This study aimed to investigate vertical variations in dissolved organic matter (DOM) properties, humus (HS) composition, humic acid (HA) characteristics, and clay mineral dynamics, with a particular focus on the vertical distribution of HS components and mineral composition across Dark-brown, Meadow, and Paddy soil profiles. Results indicated that: (1) DOM in all three soil types was predominantly endogenous, primarily derived from microbial metabolism with minimal contributions from plant residues. (2) Vertical trends in DOM carbon content (C_DOM) were specific to soil type: in Dark-brown soil, C_DOM slightly increased from the Ap to Bt layer, followed by a sharp increase in the C layer; Meadow soil exhibited a significant decrease in C_DOM in the AB layer but remained relatively stable in other layers; Paddy soil showed a consistent decline in C_DOM with increasing depth. (3) HS and its fractions exhibited vertical variability: Paddy soil showed higher HS content in surface layers; carbon contents of water-soluble substances, HA, and humic-extracted acid (C_WSS, C_HA, and C_HE) decreased with depth in Dark-brown and Paddy soils, whereas they remained relatively stable in deeper layers of Meadow soil. (4) HA characteristics, including C/N ratio, functional groups, and aromaticity, were influenced by both depth and soil type: the Ap2 layer of Paddy soil effectively restricted the downward movement of organic matter; Fe³⁺ complexation played a key role in HA stabilization in Dark-brown soil; Meadow soil exhibited transitional HS properties. (5) Clay mineral assemblages were dominated by 2:1 type minerals (illite, smectite, illite–smectite interstratifications), showing distinct vertical weathering patterns: illite content decreased with depth due to hydrolysis, while proton-driven dissolution promoted kaolinite formation in surface layers, particularly in Dark-brown soil 2:1 minerals enhancing organic–mineral complexation in Meadow soil. The findings of this study provided a scientific basis for optimizing soil carbon pool management and offer insights into organic–mineral interactions that can enhance organic matter sequestration in agricultural soils. Full article

Mobile genetic elements such as integrons are key drivers of microbial evolution, enabling rapid adaptation to environmental pressures through the acquisition and rearrangement of gene cassettes. In this study, we explored the structural diversity and synteny of class 1 integrons (intI1) across a set of agroecosystem-related environments, including digestate, compost, and rhizosphere soils from wheat crops (Triticum durum and T. aestivum). Our results reveal distinct gene cassette architectures shaped by the origin of the samples: digestate harbored the most diverse and complex arrays, while compost displayed streamlined structures. Rhizosphere soils exhibited intermediate configurations, reflecting a dynamic balance between environmental exposure and host influence. Genes associated with resistance to antibiotics and heavy metals, such as qacEΔ1 and ebrA, were differentially distributed, suggesting site-specific selective pressures. The observed patterns of cassette organization and diversity underscore the role of integron synteny as a molecular fingerprint of microbial adaptation. These findings position class 1 integrons as promising bioindicators of soil health and functional resilience, supporting a One Health approach to sustainable agriculture and microbial risk monitoring. Full article

Background/Objectives: High-risk human papillomavirus (HPV) is the principal etiological agent of cervical cancer, with distinct genotype-specific oncogenic potential. While HPV type 16 is most frequently implicated in carcinogenesis, the role of other genotypes and their interaction with sexually transmitted infections and cervico-vaginal dysbiosis is gaining recognition. This study aimed to assess the genotype-specific distribution of high-risk HPV among HPV-positive women from Southern Croatia and examine associations with age and co-infections with selected microbial pathogens. Methods: We conducted a retrospective cross-sectional study on 1211 HPV-positive women (out of 3098 tested) from Split and Dalmatia County between 2023 and 2024. Cervico-vaginal swabs were tested using molecular and culture-based methods for 14 high-risk HPV genotypes and several pathogens, including Chlamydia trachomatis, Mycoplasma genitalium, Mycoplasma hominis, Ureaplasma urealyticum, Gardnerella vaginalis, and other microorganisms. In the analysis, each detected HPV genotype was also treated as a distinct line-level observation. Genotypes were grouped by phylogenetic and carcinogenic profiles, and statistical analyses—including chi-square tests and multinomial logistic regression—were performed to evaluate associations with age and co-infections. Results: Among high-risk HPV-positive women, the most frequently detected high-risk HPV genotypes were HPV 16 (23.3%), HPV 31 (22.4%), and HPV 51 (13.5%). Notably, HPV 18 was less prevalent (8.1%) and occurred at a similar frequency to HPV 58 and 68. Although younger age was significantly associated with high-risk HPV positivity (p < 0.001), no significant differences in HPV genotype group distribution were observed between age groups; however, C. trachomatis and Streptococcus agalactiae were significantly more prevalent in women aged ≤29 years (p < 0.001 and p = 0.029, respectively). Multinomial regression revealed that C. trachomatis was negatively associated with 16-related and lower-risk genotypes, while G. vaginalis showed a positive association with 16-related types. Conclusions: There is a complex interplay between high-risk HPV genotypes and microbial co-infections, which means the broader cervico-vaginal microbiome has to be considered in HPV risk assessment. The findings highlight the need for extended genotyping and microbial screening to inform regional prevention strategies. Full article

Understanding the spatiotemporal dynamics of water quality parameters and microbial communities in drinking water distribution systems (DWDS) and their interrelationships is critical for ensuring the safety of tap water supply. This study investigated the diurnal, monthly, and annual variation patterns of water quality and the stage-specific succession behaviors of microbial communities in a DWDS located in southeastern China. Results indicated that hydraulic shear stress during peak usage periods drove biofilm detachment and particle resuspension. This process led to significant diurnal fluctuations in total cell counts (TCC) and metal ions, with coefficients of variation ranging from 0.44 to 1.89. Monthly analyses revealed the synergistic risks of disinfection by-products (e.g., 24.5 μg/L of trichloromethane) under conditions of low chlorine residual (<0.2 mg/L) and high organic loading. Annual trends suggested seasonal coupling: winter pH reductions correlated with organic acid accumulation, while summer microbial blooms associated with chlorine decay and temperature increase. Nonlinear interactions indicated weakened metal–organic complexation but enhanced turbidity–sulfate adsorption, suggesting altered contaminant mobility in pipe scales. Microbial analysis demonstrated persistent dominance of oligotrophic Phreatobacter and prevalence of Pseudomonas in biofilms, highlighting hydrodynamic conditions, nutrient availability, and disinfection pressure as key drivers of community succession. These findings reveal DWDS complexity and inform targeted operational and microbial risk control strategies. Full article

Legacy sulfur smelting has left behind complex contamination landscapes, yet the spatial structuring of microbial risks and adaptation strategies across soil profiles remains insufficiently understood. Microbial risk genes, including those conferring resistance to antibiotic resistance (ARGs), biocide and metal resistance (BRGs/MRGs), and virulence (VFGs), are increasingly recognized as co-selected under heavy metal stress, posing both ecological and public health concerns. In this study, we integrated geochemical analyses with metagenomic sequencing and functional annotation to jointly characterize the vertical (0–7 m) and horizontal (~2 km) distribution of heavy metals/metalloids, microbial communities, and functional risk genes at a historic smelting site in Zhenxiong, Yunnan. Heavy metals and metalloids such as arsenic (As), chromium (Cr), copper (Cu), and lead (Pb) showed clear accumulation with depth, while significantly lower concentrations were observed in both upstream and downstream locations, revealing persistent vertical and horizontal pollution gradients. Correspondingly, resistance and virulence genes were co-enriched at contaminated sites, suggesting potential co-selection under prolonged stress. LEfSe analysis revealed distinct ecological patterns: vertically, upper layers were dominated by nutrient-cycling and mildly stress-tolerant taxa, while deeper layers favored metal-resistant, oligotrophic, and potentially pathogenic microorganisms; horizontally, beneficial and diverse microbes characterized low-contamination zones, whereas heavily polluted areas were dominated by resistant and stress-adapted genera. These findings provide new insights into microbial resilience and ecological risk under long-term smelting stress. Full article