Search Results (2,282)

The effects of soil acidification on the phoD-harboring microbial community and the fractions of soil phosphorus in tea plantation soils are still unclear. In this study, tea plantations with different soil pH were used as the research object to analyze changes in soil phosphorus fractions, phoD gene abundance, phoD-harboring microbial community composition, and their relationship with tea yield and quality. The results showed that the content of tea polyphenols, caffeine, free amino acids, theanine, and tea yield decreased significantly after acidification. Moreover, the content of total phosphorus in the acidified soil also decreased significantly. Further analysis of soil phosphorus fractions showed that the acidification of the tea plantation soil resulted in a significant decrease in the content of different types of labile and moderately labile phosphorus, whereas the content of non-labile phosphorus exhibited the opposite trend. As the content of soil NaHCO₃-Po, NaOH-Po, Resin-Pi, NaHCO₃-Pi, NaOH-Pi, and HCl-Pi decreased significantly after acidification, its organic and inorganic phosphorus content also decreased significantly. Its phosphorus activation capacity decreased by 4.75% after soil acidification. Soil acidification significantly reduced the diversity of phoD-harboring microbial communities by 61.89%. Analysis of the phoD-harboring microbial community composition suggested that the microbial abundance of Acidobacteria and Proteobacteria showed a decreasing trend in acidified soils, while for Nitrospirae, Verrucomicrobia, Actinobacteria, and Planctomycetes, it showed an increasing trend. Correlation analysis showed that microorganisms with significantly decreasing abundance in tea plantation soils were significantly and positively correlated with soil pH, labile phosphorus, moderately labile phosphorus, phosphorus activation coefficients, and tea yield and quality after soil acidification. It is evident that soil acidification inhibited soil phosphorus availability by shifting phoD-harboring microbial community composition in tea plantation soils, thus affecting the yield and quality of above-ground tea leaves. Full article

This study investigated the effects of individual and combined supplementation of eucalyptus essential oil (EEO) and soy isoflavones (SI) on the growth performance, intestinal health and meat quality of weaned meat rabbits. A total of 120 Ira female rabbits were stratified by body weight (BW) and randomly allocated into four treatment groups. The rabbits were fed for 35 days using (a) basal diet (Control), (b) basal diet + 150 mg/kg EEO, (c) basal diet + 25 mg/kg SI, or (d) basal diet + 150 mg/kg EEO + 25 mg/kg SI. The results showed that supplementing EEO and SI in the diet had a synergistic effect on production performance by increasing BW and average daily gain and reducing the feed intake/gain ratio. The EEO + SI group exhibited the most pronounced improvement in growth performance. Compared with the Control group, individual or combined supplementation significantly increased both semi-clean slaughter and total eviscerated slaughter rates, and showed a synergistic effect when supplemented together. The antioxidant capacity of the rabbits was enhanced, with the EEO + SI group showing the largest improvement. Serum biochemical analysis revealed that the combined treatment improved hepatic and cardiovascular functions. Additionally, we observed that the combined addition of EEO and SI has a synergistic effect on increasing the height of intestinal villi and the villus height/crypt depth ratio. Moreover, EEO and SI synergistically improved meat quality by elevating pH value, water-holding capacity, tenderness, and fat proportion. Notably, supplementation of EEO and SI in the diet regulated the composition of the intestinal microbiota, demonstrating increased relative abundance of beneficial Bacteroides and Lachnospiraceae_NK4A136_group. In conclusion, the combination of EEO and SI outperformed individual supplements in promoting growth and intestinal barrier function, potentially through enhancing antioxidant activity, attenuating oxidative stress, protecting the hepatic/cardiovascular systems, and improving intestinal morphology and microbial composition, thereby collectively enhancing growth performance, slaughter traits, and meat quality. Full article

This study determined the efficacy of in-feed supplementation of a medium-chain fatty acid, caprylic acid (CA), on the cecal colonization of multidrug-resistant (MDR) Salmonella Heidelberg (SH) and its effect on the cecal microbiome of commercial broilers. A total of 24, 4-week-old commercial Ross 708 chickens were randomly allocated to two replicates of four treatment groups in eight BSL2 isolators (3 birds/isolator): Negative control (NC), Positive Control (PC), Antibiotic group (AB), and caprylic acid (CA) groups. The birds received a Salmonella-free standard corn–soy-based diet, with the broilers in the AB receiving 50 g/ton bacitracin methylene disalicylate, and the CA group receiving caprylic acid (1% w/w), in feed from days 1 to 35. All birds, except those in the NC group, were challenged with ~3.7 log₁₀ CFU of MDR SH/5 mL by crop gavage on day 29. Cecal samples were collected 7 days after the challenge for SH recovery by direct plating and enrichment, as well as for DNA extraction for 16S rRNA gene amplicon sequencing. Compared to the PC group, a 3.6 log₁₀ CFU/g reduction in SH was observed in the CA group (p < 0.05). Although no significant effect of CA on cecal microbial composition was observed, a significant difference in taxonomic α- and β-diversities was observed in the AB. CA also resulted in significant differences in hub taxa compared to PC in the network association analysis, indicating a potential role for microbiome modulation in its mechanism of action. Full article

The dried herb of blue fenugreek is used as a spice in the alpine region for the preparation of traditional bread and cheese. After drying, the herb is stored for a period of six to twelve months. During this time, the herb is expected to undergo changes in the compositions of the major flavor- and odor-determining compounds. To identify eventual biochemical processes, we applied different growing (conventional and sterile) and drying (air- and freeze drying) conditions and subsequently conducted periodical analysis of key aroma constituents (α-keto acids and volatile compounds) by LC-MS and GC-MS. The amount of glyoxylic acid was drastically increased in the air-dried sample, while the freeze-dried sample showed significantly higher amounts of α-keto-glutaric acid and pyruvic acid, respectively. During storage, a decrease in sulfuric compounds and an increase in alkane aldehydes were observed when comparing conventional and sterile samples. However, this increase was even greater for monoterpenes (especially camphor and p-cymene), showing thrice as high amounts after storage. Interestingly, both compounds were only formed significantly during the storage under conventional conditions, indicating that their production is induced/caused by microbial organisms. Full article

In response to China’s drive to bring newly cultivated land into production, this study evaluated how combined organic fertilizer and microbial inoculants affect soil quality, bacterial community structure, and maize yield. Four treatments were evaluated: FC (chemical fertilizer only), T50 (50% organic fertilizer + 50% chemical fertilizer), T50M (T50 plus microbial inoculant), and CK (no fertilizer). T50M significantly increased yield compared to FC and CK (p < 0.05), achieving the highest yield of 6995.73 kg ha⁻¹. This was 20.09% greater than FC. Community composition analyses showed that soil in newly cultivated land was dominated by Blastocatellia, Vicinamibacteria, and Alphaproteobacteria, together accounting for over 35.7% of total bacterial abundance. Redundancy analysis at the class level explained 55.7% of variance; soil organic matter (SOM) and available potassium positively correlated with Alphaproteobacteria and Bacteroidia, while available phosphorus and nitrate nitrogen aligned with Actinobacteria and Bacilli. Path analysis indicated that SOM and total nitrogen were the strongest positive drivers of yield. Actinobacteria and Acidobacteriae also showed direct positive effects, whereas Verrucomicrobiae had a negative effect. These results demonstrate that integrated organic–microbial amendments can enhance soil fertility and alter microbial diversity toward taxa that can improve maize productivity. Full article

Land-use type is a key factor influencing soil properties, microbial community composition, and plant nutrient status. In this study, five land-use types (Tibetan barley, rapeseed, walnut, wheat, and weeds) were investigated in a river valley of southeastern Tibet to compare their effects on soil chemical characteristics, microbial communities, and plant nutrients. Soils under walnut trees had significantly higher available phosphorus and microbial biomass phosphorus but lower soil organic matter. Rapeseed fields had higher levels of available potassium and were dominated by the fungal genus Tausonia; rapeseed leaves also contained the highest nitrogen and potassium concentrations. Weed plots supported a distinct fungal community dominated by Helvella. Tibetan barley and wheat increased overall bacterial and fungal diversity, with wheat soils with the highest microbial biomass carbon and nitrogen. Redundancy analysis indicated that soil total nitrogen, available nitrogen, and organic matter were the main drivers of plant nutrient variation, together explaining 93.5% of the total variance. These findings demonstrate how land-use type regulates soil–microbe–plant interactions in alpine valleys and provide empirical references for agricultural management and soil improvement on the Qinghai–Tibet Plateau. Full article

Microbial communities are known to colonize biocide-free (BFFs) and even biocide-containing façades (BCFs) under various environmental conditions, leading to loss of value of façades due to biologically caused aging and discoloration. The first objective of this study was to characterize the bacterial and fungal cultivation-based communities present on BCFs and BFFs after one year of outdoor exposure. The second objective was to assess their tolerance to biocide octylisothiazolinone (OIT), which was only present on the BCFs. Culture-based analysis revealed significant differences in bacterial community composition between the BFFs and BCFs. Fungal isolates also varied, with Penicillium predominantly found on the BCFs and Vishniacozyma and Memnoniella on the BFFs. MIC testing showed that the isolates from the BCFs exhibited slightly higher tolerance to OIT than those from the BFFs, although the differences were not statistically significant. Notably, several bacterial genera identified in both façade types—Clavibacter, Micrococcus, Nocardioides, Rhodococcus, and Streptomyces—as well as the fungal genus Penicillium, have previously been reported to degrade biocides. These findings demonstrate that both BF and BC façades support taxonomically diverse and resilient microbial communities within a relatively short exposure period. While minor shifts in biocide tolerance were observed, the lack of significant differences suggests that microbial adaptation to biocide-containing façades may be more complex and gradual, underscoring the need for time-resolved and functional studies to better understand microbial adaptation to biocide in façades. Full article

Challenges significantly hinder the sustainable cultivation of tea chrysanthemum, leading to imbalances in soil nutrients, the accumulation of allelopathic phenolic acids, reduced enzymatic activity, and disruptions in rhizosphere microbial communities. To explore potential mitigation strategies, this study systematically evaluated the integrative effects of exogenous methyl jasmonate (MeJA, 0–400 (μmol L⁻¹)) on both soil environmental parameters and plant growth performance under continuous cropping conditions. The results revealed that treatment with 100 (μmol L⁻¹) MeJA significantly enhanced plant height, canopy width, flower number, and fresh flower weight. Concurrently, it improved soil organic matter content, the available nitrogen levels, and redox stability while increasing the activity of key enzymes, including polyphenol oxidase, urease, and catalase. Notably, this treatment markedly reduced the accumulation of allelopathic phenolic acids, such as p-hydroxybenzoic acid and vanillic acid. High-throughput sequencing further demonstrated that 100 (μmol L⁻¹) MeJA optimized the composition of soil microbial communities, increasing the abundance of beneficial taxa, such as nitrogen-fixing and phosphate-solubilizing bacteria, while suppressing pathogenic fungi. Metabolomic analysis showed that this concentration of MeJA activated stress-resistance metabolic pathways involving flavonoids and terpenoids while downregulating degradation-related processes, thereby supporting enhanced plant resilience at the metabolic level. Collectively, these findings demonstrate that an appropriate concentration of exogenous MeJA can effectively alleviate continuous cropping obstacles in Chrysanthemum morifolium, providing both theoretical insights and practical guidance for its eco-friendly and efficient cultivation. Full article

Despite the increasing recognition of the role of urban orchard ecosystems in sustainable urban development, the mechanistic understanding of how tree species soil biochemical heterogeneity drives microbial community assembly, the spatial patterns governing microbe-environment interactions, and their collective contributions to ecosystem multifunctionality remain poorly characterized. This study investigated how Prunus species and soil depth affect microbial biodiversity and metabolomic signatures in an urban orchard in Cluj-Napoca, Romania. Soil samples were collected from five fruit tree species (apricot, peach, plum, cherry, and sour cherry) across three depths (0–10, 10–20, and 20–30 cm), resulting in 225 samples. The microbial community structure was analyzed through phospholipid fatty acid (PLFA) profiling, whereas the soil metabolome was analyzed by mass spectrometry techniques, including gas chromatography–mass spectrometry (GC–MS/MS) and MALDI time-of-flight (TOF/TOF) MS, which identified 489 compounds across 18 chemical classes. The results revealed significant tree species-specific effects on soil microbial biodiversity, with bacterial biomarkers dominating and total microbial biomass varying among species. The soils related to apricot trees presented the highest microbial activity, particularly in the surface layers. Metabolomic analysis revealed 247 distinct KEGG-annotated metabolites, with sour cherry exhibiting unique organic acid profiles and cherry showing distinctive quinone accumulation. Depth stratification influenced both microbial communities and metabolite composition, reflecting oxygen gradients and substrate availability. These findings provide mechanistic insights into urban orchard soil biogeochemistry, suggesting that strategic species selection can harness tree species-soil microbe interactions to optimize urban soil ecosystem services and enhance urban biodiversity conservation. Full article

Background/Objectives: Gestational diabetes mellitus (GDM) alters maternal metabolism during pregnancy and may impact the biochemical composition of breast milk. Given the critical role of human milk in early-life metabolic programming, identifying metabolic alterations in GDM milk and understanding the effects of insulin therapy has important implications for neonatal health. This study aims to investigate the metabolomic profile of transitional breast milk in mothers with gestational diabetes mellitus compared with healthy controls and to evaluate the impact of insulin therapy on milk metabolite composition. Methods: Breast milk samples were collected between postpartum days 10 and 15 from 80 mothers with GDM and 80 matched controls. Metabolomic profiling was performed using gas chromatography–mass spectrometry (GC–MS), and data were analyzed using multivariate and univariate statistical techniques including PCA, PLS–DA, logistic regression, and ROC analysis. Conclusions: A total of 133 metabolites were identified, and GDM mothers exhibited a distinct metabolomic signature characterized by significant alterations in carbohydrate, amino acid, and microbial-derived metabolites. In particular, galactinol, arabitol, and pyrogallol were significantly decreased, while α-ketoglutaric acid and citric acid were elevated in the GDM group. Insulin-treated mothers showed unique metabolic changes involving glycolytic intermediates (glycerone phosphoric acid), purine metabolism (xanthine), and oxidative pathways (isocitric acid, gluconic acid lactone). Multivariate models based on the top metabolites achieved moderate discriminatory performance (AUC = 0.68). GDM is associated with substantial metabolic changes in transitional breast milk, and insulin therapy appears to modulate these alterations further. These findings suggest that maternal metabolic status and its treatment can shape the neonatal nutritional environment, potentially influencing early metabolic programming. Full article

The human gut microbiota plays a critical role in health throughout life. While fruits and vegetables are well-known sources of nutrients and prebiotics, recent studies suggest they may also contribute viable microorganisms to the gut microbiome, particularly when consumed raw. However, the impact of agricultural practices—such as the use of microbial biostimulants or exposure to salt stress—on the composition of the edible plant microbiome remains poorly understood. In this study, we performed a comprehensive metataxonomic analysis of the endophytic microbiome in the edible tissues (leaves or fruits) of lettuce (Lactuca sativa) and tomato (Solanum lycopersicum), cultivated under standard conditions with or without microbial biostimulants and salt stress. Our results show that microbial biostimulants—Priestia megaterium (PGPB) and Rhizophagus irregularis (AMF)—as well as moderate salt stress, significantly reshape the composition and diversity of endophytes in both crops. Notably, the PGPB and NaCl treatments enhanced the abundance of bacterial genera such as Pantoea, Stenotrophomonas, and Massilia, which are associated with plant health and may have probiotic potential. Salt stress also increased alpha-diversity indices and favored the presence of Firmicutes and Bacteroidota, phyla commonly linked to a healthy human gut microbiome. Agronomic inputs used in organic and conventional farming, such as microbial biostimulants or controlled salt exposure, may represent novel strategies to enhance the microbial quality of fresh produce and promote gut microbial diversity through diet. Full article

Background: The human gut microbiome—a diverse ecosystem of trillions of microorganisms—plays an essential role in metabolic, immune, and neurological regulation. However, modern lifestyle factors such as antibiotic overuse, cesarean delivery, reduced breastfeeding, processed and high-sodium diets, alcohol intake, smoking, and exposure to environmental toxins (e.g., glyphosate) significantly reduce microbial diversity. Loss of keystone species like Bifidobacterium infantis (B. infantis) and Lactobacillus reuteri (L. reuteri) contributes to gut dysbiosis, which has been implicated in chronic metabolic, autoimmune, cardiovascular, and neurodegenerative conditions. Materials and Methods: This Qualitative Systematic Review (QualSR) synthesized data from over 547 studies involving human participants and standardized microbiome analysis techniques, including 16S rRNA sequencing and metagenomics. Studies were reviewed for microbial composition, immune and metabolic biomarkers, and clinical outcomes related to microbiome restoration strategies. Results: Multiple cohort studies have consistently reported a 40–60% reduction in microbial diversity among Western populations compared to traditional societies, particularly affecting short-chain fatty acid (SCFA)-producing bacteria. Supplementation with B. infantis is associated with a significant reduction in systemic inflammation—including a 50% decrease in C-reactive protein (CRP) and reduced tumor necrosis factor-alpha (TNF-α) levels—alongside increases in regulatory T cells and anti-inflammatory cytokines interleukin-10 (IL-10) and transforming growth factor-beta 1 (TGF-β1). L. reuteri demonstrates immunomodulatory and neurobehavioral benefits in preclinical models, while both probiotics enhance epithelial barrier integrity in a strain- and context-specific manner. In murine colitis, B. infantis increases ZO-1 expression by ~35%, and L. reuteri improves occludin and claudin-1 localization, suggesting that keystone restoration strengthens barrier function through tight-junction modulation. Conclusions: Together, these findings support keystone species restoration with B. infantis and L. reuteri as a promising adjunctive strategy to reduce systemic inflammation, reinforce gut barrier integrity, and modulate gut–brain axis (GBA) signaling, indicating translational potential in metabolic and neuroimmune disorders. Future research should emphasize personalized microbiome profiling, long-term outcomes, and transgenerational effects of early-life microbial disruption. Full article

Skin color is a crucial phenotypic trait in poultry that influences consumer preference, market value, and breed identification. However, the mechanisms underlying skin color variation in Lingshan chickens remain poorly understood. This study aimed to elucidate the physiological, metabolic, and microbial characteristics associated with skin color differences in male Lingshan chickens. A total of 210 castrated male Lingshan chickens were categorized into white-shanked (WS), yellow-shanked (YS), and red-shanked (RS) groups based on the Roche color fan scores. The results showed that chickens in the YS and RS groups exhibited significantly higher body weights and pigmentation levels in the shank, breast, and abdominal skin compared to those in the WS group (p < 0.05). Serum concentrations of triglycerides (TG), total cholesterol (TC), high-density lipoprotein (HDL), low-density lipoprotein (LDL), and very-low-density lipoprotein (VLDL) were markedly elevated in RS chickens. Additionally, carotenoid profiles revealed higher deposition of lutein and β-carotene in the skin and adipose tissues of YS and RS birds. Gene expression analysis indicated differential regulation of carotenoid transport and metabolism-related genes among groups. Furthermore, 16S rRNA sequencing of cecal microbiota revealed significant compositional shifts in microbial communities associated with shank pigmentation. Collectively, these findings suggest that differences in shank color in Lingshan chickens are closely linked to lipid metabolism, carotenoid transport, and gut microbiota composition. This study provides novel insights into the biological mechanisms driving skin pigmentation, offering valuable implications for breeding and functional trait selection in indigenous chicken populations. Full article

In dogs, gut microbiome dysbiosis is associated with several health conditions, including gastrointestinal disease. Probiotic supplementation can support a balanced gut microbiome. This study assessed the impact of a probiotic containing a mixture of Lacticaseibacillus casei, Limosilactobacillus fermentum, Levilactobacillus brevis, and Enterococcus faecium on the gut microbiota of six dogs using short-term colonic simulations. Two groups were included, i.e., blank versus supplementation with the test product, and incubated for 48 h. Probiotic-supplemented reactors had significantly greater fermentative activity compared with the blank, as shown by lower pH levels and higher gas pressure after 6 h, 24 h, and 48 h of incubation (p < 0.05 for all). Saccharolytic fermentation also increased, with a significantly higher level of acetate at 24 h and propionate at 6 h, 24 h, and 48 h with the test product versus blank (p < 0.05 for all). There was no significant effect of the test product on alpha-diversity, but beta-diversity analysis revealed a clear separation in the microbial community composition between the test product and blank. Eight bacterial taxa were enriched with test product supplementation, including the probiotic test strains as well as Megamonas and Bacteroides species. This study, using in vitro short-term colon simulations with six canine donors, provides insights into the probiotic characteristics of the test product. Full article

Efficient biomass harvesting remains one of the primary barriers to the commercial feasibility of large-scale microalgal production. This study investigates the effect of different culture media on the surface physicochemical properties of Tetradesmus sp., with emphasis on their role in natural aggregation. Cultures were grown for 30 days under controlled light and temperature conditions using Blue Green 11 (BG11), Tris–acetate–phosphate (TAP), and deionized water supplemented with Bayfolan^® fertilizer. Surface hydrophobicity was assessed through microbial adhesion to solvents (MATS) and contact angle analysis, electrokinetic properties were evaluated by zeta potential measurements, and cell surface chemistry was characterized by attenuated total reflectance (ATR) sampling methodology for Fourier Transform Infrared (FTIR) spectroscopy. Across all treatments, Tetradesmus sp. exhibited inherent hydrophobicity, but Bayfolan^® supplementation yielded the highest contact angle (49.0 ± 0.9°) and the least negative free energy of interaction (ΔGsws = −26.36 mJ·m⁻²), indicating a stronger tendency toward self-aggregation. Zeta potential values remained consistently negative (−10 to −14 mV), with no significant variation among media, suggesting that hydrophobic interactions rather than electrostatic forces govern aggregation. ATR-FTIR spectra confirmed the presence of lipids, proteins, and carbohydrates, with changes in peak intensities reflecting metabolic adjustments to media composition. These results demonstrate that low-cost Bayfolan^® supplementation enhances surface hydrophobicity and aggregation, providing a sustainable strategy to facilitate biomass recovery and reduce harvesting costs in microalgal biorefineries. Full article