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Search Results (501)

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Keywords = metal bioremediation

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15 pages, 5141 KiB  
Article
Efficient Copper Biosorption by Rossellomorea sp. ZC255: Strain Characterization, Kinetic–Equilibrium Analysis, and Genomic Perspectives
by Hao-Tong Han, Han-Sheng Zhu, Jin-Tao Zhang, Xin-Yun Tan, Yan-Xin Wu, Chang Liu, Xin-Yu Liu and Meng-Qi Ye
Microorganisms 2025, 13(8), 1839; https://doi.org/10.3390/microorganisms13081839 - 7 Aug 2025
Abstract
Heavy metal pollution, particularly copper contamination, threatens the ecological environment and human survival. In response to this pressing environmental issue, the development of innovative remediation strategies has become imperative. Bioremediation technology is characterized by remarkable advantages, including its ecological friendliness, cost-effectiveness, and operational [...] Read more.
Heavy metal pollution, particularly copper contamination, threatens the ecological environment and human survival. In response to this pressing environmental issue, the development of innovative remediation strategies has become imperative. Bioremediation technology is characterized by remarkable advantages, including its ecological friendliness, cost-effectiveness, and operational efficiency. In our previous research, Rossellomorea sp. ZC255 demonstrated substantial potential for environmental bioremediation applications. This study investigated the removal characteristics and underlying mechanism of strain ZC255 and revealed that the maximum removal capacity was 253.4 mg/g biomass under the optimal conditions (pH 7.0, 28 °C, and 2% inoculum). The assessment of the biosorption process followed pseudo-second-order kinetics, while the adsorption isotherm may fit well with both the Langmuir and Freundlich models. Cell surface alterations on the Cu(II)-treated biomass were observed through scanning electron microscopy (SEM). Cu(II) binding functional groups were determined via Fourier transform infrared spectroscopy (FTIR) analysis. Simultaneously, the genomic analysis of strain ZC255 identified multiple genes potentially involved in heavy metal resistance, transport, and metabolic processes. These studies highlight the significance of strain ZC255 in the context of environmental heavy metal bioremediation research and provide a basis for using strain ZC255 as a copper removal biosorbent. Full article
(This article belongs to the Section Environmental Microbiology)
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31 pages, 698 KiB  
Review
Mechanistic Role of Heavy Metals in Driving Antimicrobial Resistance: From Rhizosphere to Phyllosphere
by Rahul Kumar, Tanja P. Vasić, Sanja P. Živković, Periyasamy Panneerselvam, Gustavo Santoyo, Sergio de los Santos Villalobos, Adeyemi Nurudeen Olatunbosun, Aditi Pandit, Leonard Koolman, Debasis Mitra and Pankaj Gautam
Appl. Microbiol. 2025, 5(3), 79; https://doi.org/10.3390/applmicrobiol5030079 - 4 Aug 2025
Viewed by 71
Abstract
Heavy metal pollution represents a pervasive environmental challenge that significantly exacerbates the ever-increasing crisis of antimicrobial resistance and the capacity of microorganisms to endure and proliferate despite antibiotic interventions. This review examines the intricate relationship between heavy metals and AMR, with an emphasis [...] Read more.
Heavy metal pollution represents a pervasive environmental challenge that significantly exacerbates the ever-increasing crisis of antimicrobial resistance and the capacity of microorganisms to endure and proliferate despite antibiotic interventions. This review examines the intricate relationship between heavy metals and AMR, with an emphasis on the underlying molecular mechanisms and ecological ramifications. Common environmental metals, including arsenic, mercury, cadmium, and lead, exert substantial selective pressures on microbial communities. These induce oxidative stress and DNA damage, potentially leading to mutations that enhance antibiotic resistance. Key microbial responses include the overexpression of efflux pumps that expel both metals and antibiotics, production of detoxifying enzymes, and formation of protective biofilms, all of which contribute to the emergence of multidrug-resistant strains. In the soil environment, particularly the rhizosphere, heavy metals disrupt plant–microbe interactions by inhibiting beneficial organisms, such as rhizobacteria, mycorrhizal fungi, and actinomycetes, thereby impairing nutrient cycling and plant health. Nonetheless, certain microbial consortia can tolerate and detoxify heavy metals through sequestration and biotransformation, rendering them valuable for bioremediation. Advances in biotechnology, including gene editing and the development of engineered metal-resistant microbes, offer promising solutions for mitigating the spread of metal-driven AMR and restoring ecological balance. By understanding the interplay between metal pollution and microbial resistance, we can more effectively devise strategies for environmental protection and public health. Full article
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23 pages, 4116 KiB  
Article
Taxonomic and Functional Profiling of Bacterial Communities in Leather Biodegradation: Insights into Metabolic Pathways and Diversity
by Manuela Bonilla-Espadas, Marcelo Bertazzo, Irene Lifante-Martinez, Mónica Camacho, Elena Orgilés-Calpena, Francisca Arán-Aís and María-José Bonete
Bacteria 2025, 4(3), 37; https://doi.org/10.3390/bacteria4030037 - 1 Aug 2025
Viewed by 115
Abstract
Leather biodegradation is a complex microbial process with increasing relevance for sustainable waste management. In this study, we investigated bacterial communities responsible for the degradation of leather treated with different tanning agents (chrome, Zeolite, Biole®) using high-throughput 16S rRNA gene sequencing [...] Read more.
Leather biodegradation is a complex microbial process with increasing relevance for sustainable waste management. In this study, we investigated bacterial communities responsible for the degradation of leather treated with different tanning agents (chrome, Zeolite, Biole®) using high-throughput 16S rRNA gene sequencing and metatranscriptomic analysis. Proteobacteria, Bacteroidetes, and Patescibacteria emerged as the dominant phyla, while genera such as Acinetobacter, Pseudomonas, and Sphingopyxis were identified as key contributors to enzymatic activity and potential metal resistance. A total of 1302 enzymes were expressed across all the conditions, including 46 proteases, with endopeptidase La, endopeptidase Clp, and methionyl aminopeptidase being the most abundant. Collagen samples exhibited the highest functional diversity and total enzyme expression, whereas chrome-treated samples showed elevated protease activity, indicating selective pressure from heavy metals. Differential enzyme expression patterns were linked to both the microbial identity and tanning chemistry, revealing genus- and treatment-specific enzymatic signatures. These findings deepen our understanding of how tanning agents modulate the microbial structure and function and identify proteases with potential applications in the bioremediation and eco-innovation of leather waste processing. Full article
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16 pages, 1365 KiB  
Article
Immobilization of Cd Through Biosorption by Bacillus altitudinis C10-4 and Remediation of Cd-Contaminated Soil
by Tianyu Gao, Chenlu Zhang, Xueqiang Hu, Tianqi Wang, Zhitang Lyu and Lei Sun
Microorganisms 2025, 13(8), 1798; https://doi.org/10.3390/microorganisms13081798 - 1 Aug 2025
Viewed by 181
Abstract
In this study, a highly cadmium (II)-resistant bacterium strain, C10-4, identified as Bacillus altitudinis, was isolated from a sediment sample collected from Baiyangdian Lake, China. The minimum inhibitory concentration (MIC) of Cd(II) for strain C10-4 was 1600 mg/L. Factors such as the [...] Read more.
In this study, a highly cadmium (II)-resistant bacterium strain, C10-4, identified as Bacillus altitudinis, was isolated from a sediment sample collected from Baiyangdian Lake, China. The minimum inhibitory concentration (MIC) of Cd(II) for strain C10-4 was 1600 mg/L. Factors such as the contact time, pH, Cd(II) concentration, and biomass dosage affected the adsorption of Cd(II) by strain C10-4. The adsorption process fit well to the Langmuir adsorption isotherm model and the pseudo-second-order kinetics model, based on the Cd(II) adsorption data obtained from the cells of strain C10-4. This suggests that Cd(II) is adsorbed by strain C10-4 cells via a single-layer homogeneous chemical adsorption process. According to the Langmuir model, the maximum biosorption capacity was 3.31 mg/g for fresh-strain C10-4 biomass. Cd(II) was shown to adhere to the bacterial cell wall through SEM-EDS analysis. FTIR spectroscopy further indicated that the main functional sites for the binding of Cd(II) ions on the cell surface of strain C10-4 were functional groups such as N-H, -OH, -CH-, C=O, C-O, P=O, sulfate, and phosphate. After the inoculation of strain C10-4 into Cd(II)-contaminated soils, there was a significant reduction (p < 0.01) in the exchangeable fraction of Cd and an increase (p < 0.01) in the sum of the reducible, oxidizable, and residual fractions of Cd. The results show that Bacillus altitudinis C10-4 has good potential for use in the remediation of Cd(II)-contaminated soils. Full article
(This article belongs to the Section Environmental Microbiology)
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25 pages, 3789 KiB  
Article
Rhizobium’s Reductase for Chromium Detoxification, Heavy Metal Resistance, and Artificial Neural Network-Based Predictive Modeling
by Mohammad Oves, Majed Ahmed Al-Shaeri, Huda A. Qari and Mohd Shahnawaz Khan
Catalysts 2025, 15(8), 726; https://doi.org/10.3390/catal15080726 - 30 Jul 2025
Viewed by 259
Abstract
This study analyzed the heavy metal tolerance and chromium reduction and the potential of plant growth to promote Rhizobium sp. OS-1. By genetic makeup, the Rhizobium strain is nitrogen-fixing and phosphate-solubilizing in metal-contaminated agricultural soil. Among the Rhizobium group, bacterial strain OS-1 showed [...] Read more.
This study analyzed the heavy metal tolerance and chromium reduction and the potential of plant growth to promote Rhizobium sp. OS-1. By genetic makeup, the Rhizobium strain is nitrogen-fixing and phosphate-solubilizing in metal-contaminated agricultural soil. Among the Rhizobium group, bacterial strain OS-1 showed a significant tolerance to heavy metals, particularly chromium (900 µg/mL), zinc (700 µg/mL), and copper. In the initial investigation, the bacteria strains were morphologically short-rod, Gram-negative, appeared as light pink colonies on media plates, and were biochemically positive for catalase reaction and the ability to ferment glucose, sucrose, and mannitol. Further, bacterial genomic DNA was isolated and amplified with the 16SrRNA gene and sequencing; the obtained 16S rRNA sequence achieved accession no. HE663761.1 from the NCBI GenBank, and it was confirmed that the strain belongs to the Rhizobium genus by phylogenetic analysis. The strain’s performance was best for high hexavalent chromium [Cr(VI)] reduction at 7–8 pH and a temperature of 30 °C, resulting in a total decrease in 96 h. Additionally, the adsorption isotherm Freundlich and Langmuir models fit best for this study, revealing a large biosorption capacity, with Cr(VI) having the highest affinity. Further bacterial chromium reduction was confirmed by an enzymatic test of nitro reductase and chromate reductase activity in bacterial extract. Further, from the metal biosorption study, an Artificial Neural Network (ANN) model was built to assess the metal reduction capability, considering the variables of pH, temperature, incubation duration, and initial metal concentration. The model attained an excellent expected accuracy (R2 > 0.90). With these features, this bacterial strain is excellent for bioremediation and use for industrial purposes and agricultural sustainability in metal-contaminated agricultural fields. Full article
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20 pages, 4025 KiB  
Article
Genomic Analysis of Cadmium-Resistant and Plant Growth-Promoting Burkholderia alba Isolated from Plant Rhizosphere
by Luyao Feng, Xin Liu, Nan Wang, Zhuli Shi, Yu Wang, Jianpeng Jia, Zhufeng Shi, Te Pu and Peiwen Yang
Agronomy 2025, 15(8), 1780; https://doi.org/10.3390/agronomy15081780 - 24 Jul 2025
Viewed by 330
Abstract
Reducing the application of chemical fertilizers and remediating heavy metal pollution in soil are important directions in current agricultural research. Utilizing the plant-growth-promoting and remediation capabilities of bacteria can provide more environmentally friendly assistance to agricultural production. In this study, the Burkholderia alba [...] Read more.
Reducing the application of chemical fertilizers and remediating heavy metal pollution in soil are important directions in current agricultural research. Utilizing the plant-growth-promoting and remediation capabilities of bacteria can provide more environmentally friendly assistance to agricultural production. In this study, the Burkholderia alba YIM B08401 strain was isolated and identified from rhizospheric soil, subjected to whole-genome sequencing and analysis, and its Cd2+ adsorption efficiency and characteristics were confirmed using multiple experimental methods, including atomic absorption spectrometry (AAS), Fourier transform infrared spectroscopy (FTIR), and scanning electron microscopy with energy-dispersive X-ray spectroscopy (SEM-EDS). The results showed that the genome of strain YIM B08401 has a total length of 7,322,157 bp, a GC content of 66.39%, and predicts 6504 protein-coding sequences. It contains abundant functional genes related to nutrient conversion (phosphate solubilization, sulfur metabolism, zinc solubilization, siderophore production), plant hormone regulation (indole-3-acetic acid secretion, ACC deaminase production), phenolic acid degradation, root colonization, heavy metal tolerance, pathogen antagonism, and the production of antagonistic secondary metabolites. Additionally, strain YIM B08401 can specifically bind to Cd2+ through various functional groups on the cell surface, such as C-O-C, P=O, and O-H, enabling biosorption. In conclusion, strain YIM B08401 is an excellent strain with plant-growth-promoting, disease-resistant, and bioremediation capabilities, warranting further development as a biofertilizer for agricultural applications to promote green and sustainable agricultural development. Full article
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20 pages, 1612 KiB  
Review
Phytoremediation Potential of Silicon-Treated Brassica juncea L. in Mining-Affected Water and Soil Composites in South Africa: A Review
by Kamogelo Katlego Motshumi, Awonke Mbangi, Elmarie Van Der Watt and Zenzile Peter Khetsha
Agriculture 2025, 15(15), 1582; https://doi.org/10.3390/agriculture15151582 - 23 Jul 2025
Viewed by 284
Abstract
Heavy metal pollution due to mining activities poses a significant threat to agricultural production, ecosystem health, and food security in South Africa. This review integrates current knowledge on the use of mustard spinach (Brassica juncea (L.) Czern.) for the bioremediation of polluted [...] Read more.
Heavy metal pollution due to mining activities poses a significant threat to agricultural production, ecosystem health, and food security in South Africa. This review integrates current knowledge on the use of mustard spinach (Brassica juncea (L.) Czern.) for the bioremediation of polluted water and soil, focusing on enhancing phytoremediation efficiency through the use of silicon-based biostimulant treatments. Mustard spinach is known for its capacity to accumulate and tolerate high levels of toxic metals, such as Pb, Cd, and Hg, owing to its strong physiological and biochemical defense mechanisms, including metal chelation, antioxidant activity, and osmotic adjustment. However, phytoremediation potential is often constrained by the negative impact of heavy metal stress on plant growth. Recent studies have shown that silicon-based biostimulants can alleviate metal toxicity by reducing metal bioavailability, increasing metal immobilization, and improving the antioxidative capacity and growth of plants. Combining silicon amendments with mustard spinach cultivation is a promising, eco-friendly approach to the remediation of mining-impacted soils and waters, potentially restoring agricultural productivity and reducing health risks to the resident populations. This review elucidates the multifaceted mechanisms by which silicon-enhanced phytoremediation operates, including soil chemistry modification, metal sequestration, antioxidant defense, and physiological resilience, while highlighting the practical, field-applicable benefits of this combined approach. Furthermore, it identifies urgent research priorities, such as field validation and the optimization of silicon application methods. Full article
(This article belongs to the Special Issue The Role of Silicon in Improving Crop Growth Under Abiotic Stress)
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24 pages, 5241 KiB  
Review
Global Environmental Geochemistry and Molecular Speciation of Heavy Metals in Soils and Groundwater from Abandoned Smelting Sites: Analysis of the Contamination Dynamics and Remediation Alternatives in Karst Settings
by Hang Xu, Qiao Han, Muhammad Adnan, Mengfei Li, Mingshi Wang, Mingya Wang, Fengcheng Jiang and Xixi Feng
Toxics 2025, 13(7), 608; https://doi.org/10.3390/toxics13070608 - 21 Jul 2025
Viewed by 520
Abstract
Abandoned smelting sites in karst terrain pose a serious environmental problem due to the complex relationship between specific hydrogeological elements and heavy metal contamination. This review combines work from across the globe to consider how karst-specific features (i.e., rapid underground drainage, high permeability, [...] Read more.
Abandoned smelting sites in karst terrain pose a serious environmental problem due to the complex relationship between specific hydrogeological elements and heavy metal contamination. This review combines work from across the globe to consider how karst-specific features (i.e., rapid underground drainage, high permeability, and carbonate mineralogy) influence the mobility, speciation, and bioavailability of “metallic” pollutants, such as Pb, Cd, Zn, and As. In some areas, such as Guizhou (China), the Cd content in the surface soil is as high as 23.36 mg/kg, indicating a regional risk. Molecular-scale analysis, such as synchrotron-based XAS, can elucidate the speciation forms that underlie toxicity and remediation potential. Additionally, we emphasize discrepancies between karst in Asia, Europe, and North America and synthesize cross-regional contamination events. The risk evaluation is complicated, particularly when dynamic flow systems and spatial heterogeneity are permanent, and deep models like DI-NCPI are required as a matter of course. The remediation is still dependent on the site; however, some technologies, such as phytoremediation, biosorption, and bioremediation, are promising if suitable geochemical and microbial conditions are present. This review presents a framework for integrating molecular data and hydrogeological concepts to inform the management of risk and sustainable remediation of legacy metal pollution in karst. Full article
(This article belongs to the Section Toxicity Reduction and Environmental Remediation)
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31 pages, 860 KiB  
Systematic Review
Advances in Biotechnology in the Circular Economy: A Path to the Sustainable Use of Resources
by Pedro Carmona Marques, Pedro C. B. Fernandes, Pedro Sampaio and Joaquim Silva
Sustainability 2025, 17(14), 6391; https://doi.org/10.3390/su17146391 - 12 Jul 2025
Viewed by 707
Abstract
This article analyzes the role of biotechnologies in supporting the circular economy in various productive sectors. It highlights innovative approaches that contribute to sustainability, resource regeneration, waste recovery, and reduced dependence on fossil fuels. The text brings together relevant examples of biotechnological applications [...] Read more.
This article analyzes the role of biotechnologies in supporting the circular economy in various productive sectors. It highlights innovative approaches that contribute to sustainability, resource regeneration, waste recovery, and reduced dependence on fossil fuels. The text brings together relevant examples of biotechnological applications aimed at the production of bioplastics, bioenergy, bioproducts, and bioremediation solutions, among others of interest. In addition, it highlights the potential of using agro-industrial waste as raw material in biotechnological processes, promoting more efficient production chains with less environmental impact. The methodology was based on a comprehensive review of recent advances in industrial biotechnology. The main results reveal successful applications in the production of polyhydroxyalkanoates (PHAs) from food waste, in the microbial bioleaching of metals from electronic waste, and in the bioconversion of agricultural byproducts into functional materials, among others. The article also discusses the regulatory and social factors that influence the integration of these solutions into circular value chains. It concludes that biotechnology is a key element for the circular bioeconomy, offering scalable and environmentally efficient alternatives to conventional linear models, although its large-scale adoption depends on overcoming technological and market challenges. Full article
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40 pages, 1029 KiB  
Review
Biotechnological Potential of Extremophiles: Environmental Solutions, Challenges, and Advancements
by Fabrizia Sepe, Ezia Costanzo, Elena Ionata and Loredana Marcolongo
Biology 2025, 14(7), 847; https://doi.org/10.3390/biology14070847 - 11 Jul 2025
Viewed by 672
Abstract
Extremophiles are microorganisms capable of living on Earth in ecological niches characterized by peculiar conditions, including extreme temperatures and/or pH, high salt concentrations, and the presence of heavy metals. The development of unique structural and functional adaptation strategies has stimulated an increasing scientific [...] Read more.
Extremophiles are microorganisms capable of living on Earth in ecological niches characterized by peculiar conditions, including extreme temperatures and/or pH, high salt concentrations, and the presence of heavy metals. The development of unique structural and functional adaptation strategies has stimulated an increasing scientific interest since their discovery. The importance of extremophiles lies in their exploitability in significant bioprocesses with several biotechnological applications and their role as a fundamental source of numerous high-value-added biomolecules. This review aims to examine the diversity and specificities of extremophilic archaea and bacteria, with particular emphasis on their potential applications and development in biotechnology and biomedicine. The use of extremophiles and their extremozymes has allowed applications in several fields, such as bioremediation, sustainable agriculture, the recovery of bioactive molecules for use in bioenergy, biomedicine, and nanoparticle production. The comprehension and exploitation of the complex molecular mechanisms that enable life in extreme environments represent a challenge to mitigate current climate change problems and to invest in sustainable development towards a green transition. Full article
(This article belongs to the Special Issue Adaptation of Living Species to Environmental Stress)
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24 pages, 685 KiB  
Review
Comparative Phycoremediation Potential of Micro-Green Algae and Dinoflagellates in Coastal and Inland Qatar
by Roda F. Al-Thani and Bassam Taha Yasseen
Processes 2025, 13(7), 2190; https://doi.org/10.3390/pr13072190 - 9 Jul 2025
Viewed by 421
Abstract
The Arabian Gulf, bordered by major energy-producing nations, harbors diverse microalgal communities with strong potential for the bioremediation of environmental pollutants, particularly petroleum hydrocarbons. This review evaluates two key microalgal groups—micro-green algae and dinoflagellates—highlighting their distinct physiological traits and ecological roles in pollution [...] Read more.
The Arabian Gulf, bordered by major energy-producing nations, harbors diverse microalgal communities with strong potential for the bioremediation of environmental pollutants, particularly petroleum hydrocarbons. This review evaluates two key microalgal groups—micro-green algae and dinoflagellates—highlighting their distinct physiological traits and ecological roles in pollution mitigation. Dinoflagellates, including Prorocentrum and Protoperidinium, have demonstrated hydrocarbon-degrading abilities but are frequently linked to harmful algal blooms (HABs), marine toxins, and bioluminescence, posing ecological and health risks. The toxins produced by these algae can be hemolytic or neurotoxic and include compounds such as azaspiracids, brevetoxins, ciguatoxins, okadaic acid, saxitoxins, and yessotoxins. In contrast, micro-green algae such as Oedogonium and Pandorina are generally non-toxic, seldom associated with HABs, and typically found in clean freshwater and brackish environments. Some species, like Chlorogonium, indicate pollution tolerance, while Dunaliella has shown promise in remediating contaminated seawater. Both groups exhibit unique enzymatic pathways and metabolic mechanisms for degrading hydrocarbons and remediating heavy metals. Due to their respective phycoremediation capacities and environmental adaptability, these algae offer sustainable, nature-based solutions for pollution control in coastal, estuarine, and inland freshwater systems, particularly in mainland Qatar. This review compares their remediation efficacy, ecological impacts, and practical limitations to support the selection of effective algal candidates for eco-friendly strategies targeting petroleum-contaminated marine environments. Full article
(This article belongs to the Special Issue Microbial Bioremediation of Environmental Pollution (2nd Edition))
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21 pages, 2754 KiB  
Article
Exploring Growth Phase Effect on Polysaccharide Composition and Metal Binding Properties in Parachlorella hussii
by Karima Guehaz, Zakaria Boual, Giulia Daly, Matilde Ciani, Hakim Belkhalfa and Alessandra Adessi
Polysaccharides 2025, 6(3), 58; https://doi.org/10.3390/polysaccharides6030058 - 2 Jul 2025
Viewed by 432
Abstract
Microalgae-based bioremediation is increasingly recognized as a sustainable, efficient, and straightforward technology. Despite this growing interest, the potential of Parachlorella hussii for metal biosorption remains underexplored. This study is the first report evaluating the metal biosorption activity in Parachlorella hussii ACOI 1508 (N9), [...] Read more.
Microalgae-based bioremediation is increasingly recognized as a sustainable, efficient, and straightforward technology. Despite this growing interest, the potential of Parachlorella hussii for metal biosorption remains underexplored. This study is the first report evaluating the metal biosorption activity in Parachlorella hussii ACOI 1508 (N9), highlighting the impact of the culture age on the monosaccharide composition and its correlation to the metal binding capacity. The capsular strain (N9) was isolated from the hypersaline ecosystem—Lake Chott Aïn El-Beida—in southeastern Algeria. Cultivated in Bold’s Basal medium, the strain produced 0.807 ± 0.059 g L−1 of RPSs and 1.975 ± 0.120 g L−1 of CPSs. Biochemical analysis of the extracts revealed a high total sugar content (% w/w) that ranged from 62.98 ± 4.87% to 95.60 ± 87% and a low protein content (% w/w) that ranged from 0.49 ± 0.08% to 1.35 ± 0.69%, with RPS-D7 and RPS-D14 having high molecular weight (≥2 MDa). HPLC-based monosaccharide characterization demonstrated compositional differences between the exponential and stationary phases, with rhamnose dominating (~55%) in RPS-D14 and with the presence of uronic acids comprising 7–11.3%. Metal removal efficiency was evaluated using the whole biomass in two growth phases. Copper uptake exhibited the highest capacity, reaching 18.55 ± 0.61 mg Cu g−1 DW at D14, followed by zinc removal with 6.52 ± 0.61 mg Zn g−1 DW. Interestingly, removal efficiencies increased to about twofold during the stationary phase, reaching 51.15 ± 1.14% for Cu, 51.08 ± 3.35% for Zn, and 36.55 ± 3.09% for Ni. The positive results obtained for copper/zinc removal highlight the biosorption potential of P. hussii, and notably, we found that the metal removal capacity significantly improved with culture age—a parameter that has been poorly investigated in prior studies. Furthermore, we observed a growth phase-dependent modulation in monosaccharide composition, which correlated with enhanced functional properties of the excreted biomolecules involved in biosorption. This metabolic adjustment suggests an adaptive response that may contribute to the species’ effectiveness in heavy metal uptake, underscoring its novelty and biotechnological relevance. Full article
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14 pages, 1872 KiB  
Article
Insights into the Thriving of Bacillus megaterium and Rhodotorula mucilaginosa in Mining Areas: Their Adaptation and Tolerance Under Extreme Levels of Cu and Mn
by Alfonso Álvarez-Villa, Maribel Plascencia-Jatomea, Kadiya Calderón, Katiushka Arévalo-Niño, Guadalupe López-Avilés and Francisco Javier Almendariz-Tapia
Microbiol. Res. 2025, 16(7), 140; https://doi.org/10.3390/microbiolres16070140 - 1 Jul 2025
Viewed by 381
Abstract
Understanding microbial adaptation and tolerance based on the cellular concentration and biosorption capacity provides critical insights for evaluating microbial performance under heavy metal stress, which is essential for selecting efficient strains or consortia for bioremediation applications. In this study, the adaptation and tolerance [...] Read more.
Understanding microbial adaptation and tolerance based on the cellular concentration and biosorption capacity provides critical insights for evaluating microbial performance under heavy metal stress, which is essential for selecting efficient strains or consortia for bioremediation applications. In this study, the adaptation and tolerance of Bacillus megaterium and Rhodotorula mucilaginosa to elevated concentrations of copper (Cu) and manganese (Mn) were investigated by introducing the maximum adaptation concentration (MAC) alongside the maximum tolerable concentration (MTC) and the minimum inhibitory concentration (MIC). A Gaussian model was fitted to the relative growth responses to estimate the MACs, MTCs, and MICs. B. megaterium exhibited MACs of 4.6 ppm Cu and 393.9 ppm Mn, while R. mucilaginosa showed MACs of 59.6 ppm Cu and 64.4 ppm Mn, corresponding to concentrations that stimulated their maximum cell density. A biosorption analysis revealed average capacities of 6.3 ± 5.3 mg Cu/g biomass and 28.6 ± 17.2 mg Mn/g biomass, positively correlated with the MTCs, indicating enhanced metal uptake under sublethal stress. The co-culture assays demonstrated dynamic microbial interactions shaped by the type and concentration of metal, including coexistence, competitive substitution, and dominance by tolerance. These findings support the use of MACs as indicators of growth stimulation and MTCs as thresholds for enhanced metal uptake, providing a dual-parameter framework for selecting metallotolerant microorganisms for metal recovery strategies. Full article
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17 pages, 2818 KiB  
Review
Metabolic Responses, Uptake, and Export of Copper in Cyanobacteria
by Jean Coutinho Oder, Thamires Emidio Sateles, Laila Barros de Souza, Adriano Nunes-Nesi, Wagner L. Araújo and Luna Alvarenga-Lucius
Biology 2025, 14(7), 798; https://doi.org/10.3390/biology14070798 - 1 Jul 2025
Viewed by 459
Abstract
Copper (Cu) is an essential micronutrient for cyanobacteria, where it functions as a cofactor in key proteins involved in photosynthesis and antioxidant defense. However, at elevated concentrations, Cu becomes toxic, exhibiting algicidal effects by disrupting metal homeostasis and competing for metal-binding sites on [...] Read more.
Copper (Cu) is an essential micronutrient for cyanobacteria, where it functions as a cofactor in key proteins involved in photosynthesis and antioxidant defense. However, at elevated concentrations, Cu becomes toxic, exhibiting algicidal effects by disrupting metal homeostasis and competing for metal-binding sites on critical cellular proteins. Due to the considerable morphological and physiological diversity within the phylum Cyanobacteria, the thresholds for Cu deficiency or toxicity vary considerably among strains. Maintaining Cu homeostasis in cyanobacterial cells is a complex process involving multiple layers of regulation. It begins at the extracellular polysaccharide layer, involves specialized membrane-bound proteins (in the outer, plasma, and thylakoid membranes), and results in transcriptional regulation in response to intracellular Cu status. This review summarizes the current understanding of Cu uptake and efflux pathways in cyanobacteria and explores how these mechanisms contribute to maintaining cellular Cu balance. The knowledge gained may contribute to the application of cyanobacteria in bioremediation strategies and/or the targeted use of Cu in the control of harmful cyanobacterial blooms. Full article
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35 pages, 3044 KiB  
Review
Tools for Enhancing Extracellular Electron Transfer in Bioelectrochemical Systems: A Review
by Kaline Araújo Soares, Jhoni Anderson Schembek Silva, Xin Wang, André Valente Bueno and Fernanda Leite Lobo
Fermentation 2025, 11(7), 381; https://doi.org/10.3390/fermentation11070381 - 30 Jun 2025
Viewed by 909
Abstract
Microbial Electrochemistry Technology (MET) leverages the unique process of extracellular electron transfer (EET) between electroactive bacteria (EAB) and electrodes to enable various applications, such as electricity generation, bioremediation, and wastewater treatment. This review highlights significant advancements in EET mechanisms, emphasizing both outward and [...] Read more.
Microbial Electrochemistry Technology (MET) leverages the unique process of extracellular electron transfer (EET) between electroactive bacteria (EAB) and electrodes to enable various applications, such as electricity generation, bioremediation, and wastewater treatment. This review highlights significant advancements in EET mechanisms, emphasizing both outward and inward electron transfer pathways mediated by diverse electroactive microorganisms. Notably, the role of electron shuttles, genetic modifications, and innovative electrode materials are discussed as strategies to enhance EET efficiency. Recent studies illustrate the importance of redox-active molecules, such as flavins and metal nanoparticles, in facilitating electron transfer, while genetic engineering has proven effective in optimizing microbial physiology to boost EET rates. The review also examines the impact of electrode materials on microbial attachment and performance, showcasing new composites and nanostructures that enhance power output in microbial fuel cells. By synthesizing the recent findings and proposing emerging research directions, this work provides an overview of EET enhancement strategies, aiming to inform future technological innovations in bioelectrochemical systems (BESs). Full article
(This article belongs to the Special Issue Microbial Fuel Cell Advances)
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