Search Results (17)

Malaria, an infectious disease caused by parasites of the genus Plasmodium—including the most lethal species, Plasmodium falciparum—alters the physicochemical properties of host red blood cells, including their intrinsic autofluorescence after infecting them. This exploratory study aims to investigate the possibility of using autofluorescence as a method for detecting infection in red blood cells. The autofluorescence spectra of uninfected and in vitro infected red blood cells with Plasmodium falciparum were monitored and compared across an excitation wavelength range of 255 to 630 nm. Principal Component Analysis revealed that only two wavelengths (315 and 320 nm), previously undocumented, were able to accurately differentiate infected from uninfected red blood cells, showing an increase in autofluorescence in the ultraviolet and blue regions. This phenomenon is hypothetically associated with the presence of natural fluorophores such as tryptophan, FAD, NADH, porphyrins, and lipopigments. To classify the samples, Linear Discriminant Analysis (LDA) was employed, and Wilks’ Lambda test confirmed that the discriminant function was significant, enabling correct classification of samples in more than 91% of cases. Overall, our results support the potential use of autofluorescence as an effective approach for detecting malaria parasite infection in red blood cells, with the possibility of implementation in portable devices for rapid field diagnostics. Full article

Malaria remains a global health concern, with 249 million cases and 608,000 deaths being reported by the WHO in 2022. Traditional diagnostic methods often struggle with inconsistent stain quality, lighting variations, and limited resources in endemic regions, making manual detection time-intensive and error-prone. This study introduces an automated system for analyzing Romanowsky-stained thick blood smears, focusing on image quality evaluation, leukocyte detection, and malaria parasite classification. Using a dataset of 1000 clinically diagnosed images, we applied feature extraction techniques, including histogram bins and texture analysis with the gray level co-occurrence matrix (GLCM), alongside support vector machines (SVMs), for image quality assessment. Leukocyte detection employed optimal thresholding segmentation utility (OTSU) thresholding, binary masking, and erosion, followed by the connected components algorithm. Parasite detection used high-intensity region selection and adaptive bounding boxes, followed by a custom convolutional neural network (CNN) for candidate identification. A second CNN classified parasites into trophozoites, schizonts, and gametocytes. The system achieved an F1-score of 95% for image quality evaluation, 88.92% for leukocyte detection, and 82.10% for parasite detection. The F1-score—a metric balancing precision (correctly identified positives) and recall (correctly detected instances out of actual positives)—is especially valuable for assessing models on imbalanced datasets. In parasite stage classification, CNN achieved F1-scores of 85% for trophozoites, 88% for schizonts, and 83% for gametocytes. This study introduces a robust and scalable automated system that addresses critical challenges in malaria diagnosis by integrating advanced image quality assessment and deep learning techniques for parasite detection and classification. This system’s adaptability to low-resource settings underscores its potential to improve malaria diagnostics globally. Full article

Malaria is a leading cause of morbidity and mortality in tropical and sub-tropical regions. This research proposed a malaria diagnosis system based on the you only look once algorithm for malaria parasite detection and the convolutional neural network algorithm for malaria parasite life stage classification. Two public datasets are utilized: MBB and MP-IDB. The MBB dataset includes human blood smears infected with Plasmodium vivax (P. vivax). While the MP-IDB dataset comprises 4 species of malaria parasites: P. vivax, P. ovale, P. malariae, and P. falciparum. Four distinct stages of life exist in every species, including ring, trophozoite, schizont, and gametocyte. For the MBB dataset, detection and classification accuracies of 0.92 and 0.93, respectively, were achieved. For the MP-IDB dataset, the proposed algorithms yielded the accuracies for detection and classification as follows: 0.84 and 0.94 for P. vivax; 0.82 and 0.93 for P. ovale; 0.79 and 0.93 for P. malariae; and 0.92 and 0.96 for P. falciparum. The detection results showed the models trained by P. vivax alone provide good detection capabilities also for other species of malaria parasites. The classification performance showed the proposed algorithms yielded good malaria parasite life stage classification performance. The future directions include collecting more data and exploring more sophisticated algorithms. Full article

Loop-Mediated Isothermal Amplification (LAMP) technology is emerging as a rapid pathogen testing method, potentially challenging the RT-PCR “gold standard”. Despite recent advancements, LAMP’s widespread adoption remains limited. This study provides a comprehensive market overview and assesses future growth prospects to aid stakeholders in strategic decision-making and policy formulation. Using a dataset of 1134 LAMP patent documents, we analyzed lifecycle and geographic distribution, applicant profiles, CPC code classifications, and patent claims. Additionally, we examined clinical developments from 21 curated clinical trials, focusing on trends, geographic engagement, sponsor types, and the conditions and pathogens investigated. Our analysis highlights LAMP’s potential as a promising rapid pathogen testing alternative, especially in resource-limited areas. It also reveals a gap between clinical research, which targets bacterial and parasitic diseases like malaria, leishmaniasis, and tuberculosis, and basic research and commercial efforts that prioritize viral diseases such as SARS-CoV-2 and influenza. European stakeholders emphasize the societal impact of addressing unmet needs in resource-limited areas, while American and Asian organizations focus more on research, innovation, and commercialization. Full article

Malaria is a disease that affects millions of people worldwide with a consistent mortality rate. The light microscope examination is the gold standard for detecting infection by malaria parasites. Still, it is limited by long timescales and requires a high level of expertise from pathologists. Early diagnosis of this disease is necessary to achieve timely and effective treatment, which avoids tragic consequences, thus leading to the development of computer-aided diagnosis systems based on artificial intelligence (AI) for the detection and classification of blood cells infected with the malaria parasite in blood smear images. Such systems involve an articulated pipeline, culminating in the use of machine learning and deep learning approaches, the main branches of AI. Here, we present a systematic literature review of recent research on the use of automated algorithms to identify and classify malaria parasites in blood smear images. Based on the PRISMA 2020 criteria, a search was conducted using several electronic databases including PubMed, Scopus, and arXiv by applying inclusion/exclusion filters. From the 606 initial records identified, 135 eligible studies were selected and analyzed. Many promising results were achieved, and some mobile and web applications were developed to address resource and expertise limitations in developing countries. Full article

Thailand has made substantial progress towards malaria elimination, with 46 of the country’s 77 provinces declared malaria-free as part of the subnational verification program. Nonetheless, these areas remain vulnerable to the reintroduction of malaria parasites and the reestablishment of indigenous transmission. As such, prevention of reestablishment (POR) planning is of increasing concern to ensure timely response to increasing cases. A thorough understanding of both the risk of parasite importation and receptivity for transmission is essential for successful POR planning. Routine geolocated case- and foci-level epidemiological and case-level demographic data were extracted from Thailand’s national malaria information system for all active foci from October 2012 to September 2020. A spatial analysis examined environmental and climate factors associated with the remaining active foci. A logistic regression model collated surveillance data with remote sensing data to investigate associations with the probability of having reported an indigenous case within the previous year. Active foci are highly concentrated along international borders, particularly Thailand’s western border with Myanmar. Although there is heterogeneity in the habitats surrounding active foci, land covered by tropical forest and plantation was significantly higher for active foci than other foci. The regression results showed that tropical forest, plantations, forest disturbance, distance from international borders, historical foci classification, percentage of males, and percentage of short-term residents were associated with the high probability of reporting indigenous cases. These results confirm that Thailand’s emphasis on border areas and forest-going populations is well placed. The results suggest that environmental factors alone are not driving malaria transmission in Thailand; rather, other factors, including demographics and behaviors that intersect with exophagic vectors, may also be contributors. However, these factors are syndemic, so human activities in areas covered by tropical forests and plantations may result in malaria importation and, potentially, local transmission, in foci that had previously been cleared. These factors should be addressed in POR planning. Full article

Automated deep learning is promising in artificial intelligence (AI). However, a few applications of automated deep learning networks have been made in the clinical medical fields. Therefore, we studied the application of an open-source automated deep learning framework, Autokeras, for detecting smear blood images infected with malaria parasites. Autokeras is able to identify the optimal neural network to perform the classification task. Hence, the robustness of the adopted model is due to it not needing any prior knowledge from deep learning. In contrast, the traditional deep neural network methods still require more construction to identify the best convolutional neural network (CNN). The dataset used in this study consisted of 27,558 blood smear images. A comparative process proved the superiority of our proposed approach over other traditional neural networks. The evaluation results of our proposed model achieved high efficiency with impressive accuracy, reaching 95.6% when compared with previous competitive models. Full article

The immune system’s overproduction of white blood cells (WBCs) results in the most common blood cancer, leukemia. It accounts for about 25% of childhood cancers and is one of the primary causes of death worldwide. The most well-known type of leukemia found in the human bone marrow is acute lymphoblastic leukemia (ALL). It is a disease that affects the bone marrow and kills white blood cells. Better treatment and a higher likelihood of survival can be helped by early and precise cancer detection. As a result, doctors can use computer-aided diagnostic (CAD) models to detect early leukemia effectively. In this research, we proposed a classification model based on the EfficientNet-B3 convolutional neural network (CNN) model to distinguish ALL as an automated model that automatically changes the learning rate (LR). We set up a custom LR that compared the loss value and training accuracy at the beginning of each epoch. We evaluated the proposed model on the C-NMC_Leukemia dataset. The dataset was pre-processed with normalization and balancing. The proposed model was evaluated and compared with recent classifiers. The proposed model’s average precision, recall, specificity, accuracy, and Disc similarity coefficient (DSC) were 98.29%, 97.83%, 97.82%, 98.31%, and 98.05%, respectively. Moreover, the proposed model was used to examine microscopic images of the blood to identify the malaria parasite. Our proposed model’s average precision, recall, specificity, accuracy, and DSC were 97.69%, 97.68%, 97.67%, 97.68%, and 97.68%, respectively. Therefore, the evaluation of the proposed model showed that it is an unrivaled perceptive outcome with tuning as opposed to other ongoing existing models. Full article

Malaria poses a global health problem every day, as it affects millions of lives all over the world. A traditional diagnosis requires the manual inspection of blood smears from the patient under a microscope to check for the malaria parasite. This is often time consuming and subject to error. Thus, the automated detection and classification of the malaria type and stage of progression can provide a quicker and more accurate diagnosis for patients. In this research, we used two object detection models, YOLOv5 and scaled YOLOv4, to classify the stage of progression and type of malaria parasite. We also used two different datasets for the classification of stage and parasite type while assessing the viability of the dataset for the task. The dataset used is comprised of microscopic images of red blood cells that were either parasitized or uninfected. The infected cells were classified based on two broad categories: the type of malarial parasite causing the infection and the stage of progression of the disease. The dataset was manually annotated using the LabelImg tool. The images were then augmented to enhance model training. Both models YOLOv5 and scaled YOLOv4 proved effective in classifying the type of parasite. Scaled YOLOv4 was in the lead with an accuracy of 83% followed by YOLOv5 with an accuracy of 78.5%. The proposed models may be useful for the medical professionals in the accurate diagnosis of malaria and its stage prediction. Full article

(1) Background: People may be infected with an insect-borne disease (malaria) through the blood input of malaria-infected people or the bite of Anopheles mosquitoes. Doctors need a lot of time and energy to diagnose malaria, and sometimes the results are not ideal. Many researchers use CNN to classify malaria images. However, we believe that the classification performance of malaria parasites can be improved. (2) Methods: In this paper, we propose a novel method (ROENet) to automatically classify malaria parasite on the blood smear. The backbone of ROENet is the pre-trained ResNet-18. We use randomized neural networks (RNNs) as the classifier in our proposed model. Three RNNs are used in ROENet, which are random vector functional link (RVFL), Schmidt neural network (SNN), and extreme learning machine (ELM). To improve the performance of ROENet, the results of ROENet are the ensemble outputs from three RNNs. (3) Results: We evaluate the proposed ROENet by five-fold cross-validation. The specificity, F1 score, sensitivity, and accuracy are 96.68 ± 3.81%, 95.69 ± 2.65%, 94.79 ± 3.71%, and 95.73 ± 2.63%, respectively. (4) Conclusions: The proposed ROENet is compared with other state-of-the-art methods and provides the best results of these methods. Full article

Malaria is a globally widespread disease caused by parasitic protozoa transmitted to humans by infected female mosquitoes of Anopheles. It is caused in humans only by the parasite Plasmodium, further classified into four different species. Identifying malaria parasites is possible by analysing digital microscopic blood smears, which is tedious, time-consuming and error prone. So, automation of the process has assumed great importance as it helps the laborious manual process of review and diagnosis. This work focuses on deep learning-based models, by comparing off-the-shelf architectures for classifying healthy and parasite-affected cells, by investigating the four-class classification on the Plasmodium falciparum stages of life and, finally, by evaluating the robustness of the models with cross-dataset experiments on two different datasets. The main contributions to the research in this field can be resumed as follows: (i) comparing off-the-shelf architectures in the task of classifying healthy and parasite-affected cells, (ii) investigating the four-class classification on the P. falciparum stages of life and (iii) evaluating the robustness of the models with cross-dataset experiments. Eleven well-known convolutional neural networks on two public datasets have been exploited. The results show that the networks have great accuracy in binary classification, even though they lack few samples per class. Moreover, the cross-dataset experiments exhibit the need for some further regulations. In particular, ResNet-18 achieved up to 97.68% accuracy in the binary classification, while DenseNet-201 reached 99.40% accuracy on the multiclass classification. The cross-dataset experiments exhibit the limitations of deep learning approaches in such a scenario, even though combining the two datasets permitted DenseNet-201 to reach 97.45% accuracy. Naturally, this needs further investigation to improve the robustness. In general, DenseNet-201 seems to offer the most stable and robust performance, offering as a crucial candidate to further developments and modifications. Moreover, the mobile-oriented architectures showed promising and satisfactory performance in the classification of malaria parasites. The obtained results enable extensive improvements, specifically oriented to the application of object detectors for type and stage of life recognition, even in mobile environments. Full article

The parasite species of genus Plasmodium causes Malaria, which remains a major global health problem due to parasite resistance to available Antimalarial drugs and increasing treatment costs. Consequently, computational prediction of new Antimalarial compounds with novel targets in the proteome of Plasmodium sp. is a very important goal for the pharmaceutical industry. We can expect that the success of the pre-clinical assay depends on the conditions of assay per se, the chemical structure of the drug, the structure of the target protein to be targeted, as well as on factors governing the expression of this protein in the proteome such as genes (Deoxyribonucleic acid, DNA) sequence and/or chromosomes structure. However, there are no reports of computational models that consider all these factors simultaneously. Some of the difficulties for this kind of analysis are the dispersion of data in different datasets, the high heterogeneity of data, etc. In this work, we analyzed three databases ChEMBL (Chemical database of the European Molecular Biology Laboratory), UniProt (Universal Protein Resource), and NCBI-GDV (National Center for Biotechnology Information—Genome Data Viewer) to achieve this goal. The ChEMBL dataset contains outcomes for 17,758 unique assays of potential Antimalarial compounds including numeric descriptors (variables) for the structure of compounds as well as a huge amount of information about the conditions of assays. The NCBI-GDV and UniProt datasets include the sequence of genes, proteins, and their functions. In addition, we also created two partitions (c_assayj = c_aj and c_dataj = cd_j) of categorical variables from theChEMBL dataset. These partitions contain variables that encode information about experimental conditions of preclinical assays (c_aj) or about the nature and quality of data (c_dj). These categorical variables include information about 22 parameters of biological activity (c_a0), 28 target proteins (c_a1), and 9 organisms of assay (c_a2), etc. We also created another partition of (c_protj = c_pj) including categorical variables with biological information about the target proteins, genes, and chromosomes. These variables cover32 genes (c_p0), 10 chromosomes (c_p1), gene orientation (c_p2), and 31 protein functions (c_p3). We used a Perturbation-Theory Machine Learning Information Fusion (IFPTML) algorithm to map all this information (from three databases) into and train a predictive model. Shannon’s entropy measure Sh_k (numerical variables) was used to quantify the information about the structure of drugs, protein sequences, gene sequences, and chromosomes in the same information scale. Perturbation Theory Operators (PTOs) with the form of Moving Average (MA) operators have been used to quantify perturbations (deviations) in the structural variables with respect to their expected values for different subsets (partitions) of categorical variables. We obtained three IFPTML models using General Discriminant Analysis (GDA), Classification Tree with Univariate Splits (CTUS), and Classification Tree with Linear Combinations (CTLC). The IFPTML-CTLC presented the better performance with Sensitivity Sn(%) = 83.6/85.1, and Specificity Sp(%) = 89.8/89.7 for training/validation sets, respectively. This model could become a useful tool for the optimization of preclinical assays of new Antimalarial compounds vs. different proteins in the proteome of Plasmodium. Full article

Malaria is a disease activated by a type of microscopic parasite transmitted from infected female mosquito bites to humans. Malaria is a fatal disease that is endemic in many regions of the world. Quick diagnosis of this disease will be very valuable for patients, as traditional methods require tedious work for its detection. Recently, some automated methods have been proposed that exploit hand-crafted feature extraction techniques however, their accuracies are not reliable. Deep learning approaches modernize the world with their superior performance. Convolutional Neural Networks (CNN) are vastly scalable for image classification tasks that extract features through hidden layers of the model without any handcrafting. The detection of malaria-infected red blood cells from segmented microscopic blood images using convolutional neural networks can assist in quick diagnosis, and this will be useful for regions with fewer healthcare experts. The contributions of this paper are two-fold. First, we evaluate the performance of different existing deep learning models for efficient malaria detection. Second, we propose a customized CNN model that outperforms all observed deep learning models. It exploits the bilateral filtering and image augmentation techniques for highlighting features of red blood cells before training the model. Due to image augmentation techniques, the customized CNN model is generalized and avoids over-fitting. All experimental evaluations are performed on the benchmark NIH Malaria Dataset, and the results reveal that the proposed algorithm is $96.82$% accurate in detecting malaria from the microscopic blood smears. Full article

Malaria is an epidemic health disease and a rapid, accurate diagnosis is necessary for proper intervention. Generally, pathologists visually examine blood stained slides for malaria diagnosis. Nevertheless, this kind of visual inspection is subjective, error-prone and time-consuming. In order to overcome the issues, numerous methods of automatic malaria diagnosis have been proposed so far. In particular, many researchers have used mathematical morphology as a powerful tool for computer aided malaria detection and classification. Mathematical morphology is not only a theory for the analysis of spatial structures, but also a very powerful technique widely used for image processing purposes and employed successfully in biomedical image analysis, especially in preprocessing and segmentation tasks. Microscopic image analysis and particularly malaria detection and classification can greatly benefit from the use of morphological operators. The aim of this paper is to present a review of recent mathematical morphology based methods for malaria parasite detection and identification in stained blood smears images. Full article

Microscopy examination has been the pillar of malaria diagnosis, being the recommended procedure when its quality can be maintained. However, the need for trained personnel and adequate equipment limits its availability and accessibility in malaria-endemic areas. Rapid, accurate, accessible diagnostic tools are increasingly required, as malaria control programs extend parasite-based diagnosis and the prevalence decreases. This paper presents an image processing and analysis methodology using supervised classification to assess the presence of malaria parasites and determine the species and life cycle stage in Giemsa-stained thin blood smears. The main differentiation factor is the usage of microscopic images exclusively acquired with low cost and accessible tools such as smartphones, a dataset of 566 images manually annotated by an experienced parasilogist being used. Eight different species-stage combinations were considered in this work, with an automatic detection performance ranging from 73.9% to 96.2% in terms of sensitivity and from 92.6% to 99.3% in terms of specificity. These promising results attest to the potential of using this approach as a valid alternative to conventional microscopy examination, with comparable detection performances and acceptable computational times. Full article