Search Results (86)

Background/Objectives: Late embryogenesis abundant (LEA) proteins regulate stress responses and contribute significantly to plant stress tolerance. As a model species for stress resistance studies, foxtail millet (Setaria italica) lacks comprehensive characterization of its LEA gene family. This study aimed to comprehensively identify SiLEA genes in foxtail millet and elucidate their functional roles and tissue-specific expression patterns. Methods: Genome-wide identification of SiLEA genes was conducted, followed by phylogenetic reconstruction, cis-acting element analysis of promoters, synteny analysis, and expression profiling. Results: Ninety-four SiLEA genes were identified and classified into nine structurally distinct subfamilies, which are unevenly distributed across all nine chromosomes. Phylogenetic analysis showed closer clustering of SiLEA genes with sorghum and rice orthologs than with Arabidopsis thaliana AtLEA genes. Synteny analysis indicated the LEA gene family expansion through tandem and segmental duplication. Promoter cis-element analysis linked SiLEA genes to plant growth regulation, stress responses, and hormone signaling. Transcriptome analysis revealed tissue-specific expression patterns among SiLEA members, while RT-qPCR verified ABA-induced transcriptional regulation of SiLEA genes. Conclusions: This study identified 94 SiLEA genes grouped into nine subfamilies with distinct spatial expression profiles. ABA treatment notably upregulated SiASR-2, SiASR-5, and SiASR-6 in both shoots and roots. Full article

Background: The late embryogenesis abundant (LEA) gene family plays a critical role in abiotic stress tolerance during plant growth and development. Myricaria laxiflora, as a key pioneer species in the extreme hydrological fluctuation zone of the Yangtze River, has evolved unique adaptation mechanisms potentially linked to gene family evolution. However, the molecular mechanisms underlying how the LEA gene family responds to alternating flooding–drought cycles remain unclear. Methods and Results: In this study, we identified 31 LEA genes through whole-genome and transcriptome analyses using bioinformatics approaches, and classified them into nine subfamilies based on protein sequence similarity. These genes were distributed across 12 chromosomes. Our analysis revealed that LEA promoters contain cis-acting elements associated with anaerobic induction, abscisic acid (ABA) response, and combined low-temperature/light stress, suggesting their role in a multi-tiered environmental signal integration network. Spatio-temporal expression profiling further indicated that root-specific LEA genes maintain cellular integrity via membrane lipid binding, while leaf-predominant members cooperate with the antioxidant system to mitigate photoinhibition damage. Conclusions: This study elucidates the dynamic regulatory mechanisms of the LEA gene family during flooding-drought adaptation in M. laxiflora, providing molecular targets for ecological restoration in the Yangtze River Basin. Full article

Narenga porphyrocoma (Hance) Bor is a close relative of sugarcane, with traits such as drought resistance, robustness, early maturity, and disease resistance. In this study, we report the first genome assembly of N. porphyrocoma (Hance) Bor GXN1, a diploid species with a chromosomal count of 2n = 30. We assembled the genome into 15 pseudochromosomes with an N50 of 128.80 Mp, achieving a high level of completeness (99.0%) using benchmarking universal single-copy orthologs (BUSCO) assessment. The genome was approximately 1.8 Gb. Our analysis identified a substantial proportion of repetitive sequences, primarily long terminal repeats (LTRs), contributing to 69.12% of the genome. In total, 70,680 protein-coding genes were predicted and annotated, focusing on genes related to drought resistance. Transcriptome analysis under drought stress revealed the key gene families involved in plant physiological rhythms and hormone signal transduction, including aquaporins, late embryogenesis abundant proteins, and heat shock proteins. This research reveals the genome of the diploid wild sugarcane relative N. porphyrocoma (Hance) Bor, encouraging future studies on gene function, genome evolution, and genetic improvement of sugarcane. Full article

Dehydrins (DHNs; late embryogenesis-abundant D11 family) are a class of hydrophilic proteins involved in plant abiotic stress response. However, there is less information regarding DHN gene function in cucurbit crops. Herein, 34 DHN gene family members were identified and characterized in Cucumis sativus, Cucumis melo, Citrullus lanatus, Benincasa hispida, Lagenaria siceraria, and Cucurbita maxima. The DHN genes in the six cucurbit crops exhibited greater collinearity within subfamilies than between different subfamilies. Responses to stress (including low-temperature, salt, cadmium, and aluminum stress) varied among the DHN members, with a significant alteration in the expression of the acidic SnKn-type DHN gene CmDHN3 in response to aluminum stress. Subcellular localization analysis confirmed that CmDHN3 is expressed in the nucleus and cytoplasm. Virus-induced gene silencing (VIGS) revealed a remarkable decrease in CmDHN3 expression, which markedly increased malondialdehyde content, relative conductivity, and proline content in the roots and leaves of plants under aluminum stress. Transcriptome analysis showed that the decreased CmDHN3 expression reduced the expression of water channel protein-encoding genes. Interactions between CmDHN3 and CmAQP1 (MELO3C007188) and between CmDHN3 and CmAQP2 (MELO3C020774) were confirmed using yeast two-hybrid assays. These results clarify the pathway by which dehydrin genes are involved in the transcriptional-level response of melon to aluminum stress and provide a theoretical basis to comprehensively analyze the functions of this gene family in cucurbit crops. Full article

Dehydrins (DHNs) belong to the second family of late embryogenesis abundant (LEA) proteins, which are widely distributed in plants. We cloned a SK₃-type DHN gene named WZY1-2 in Zheng yin 1 cultivar of Triticum aestivum. An ERF-type transcription factor TaERF4a was found to be involved in the regulation of the dehydrin WZY1-2 gene in our last report. The stress-responsive ability and dual-luciferase assay demonstrated that TaERF4a positively regulates WZY1-2 gene transcription under stress conditions. In this study, we further characterized the role of the transcription factor TaERF4a in plant drought tolerance. Arabidopsis thaliana heterologously overexpressing TaERF4a exhibited higher survival rate, increased superoxide dismutase (SOD) activity, elevated proline and chlorophyll content, and reduced malondialdehyde (MDA) content under drought conditions. Conversely, silencing TaERF4a in Chinese spring wheat using the virus-induced gene silencing (VIGS) method increased the sensitivity of plants to drought stress. Furthermore, we identified the specific binding site of TaERF4a in the WZY1-2 promoter. Electrophoretic mobility shift assay (EMSA) and dual-luciferase reporter assay demonstrated that TaERF4a activates the expression of the WZY1-2 dehydrin gene through binding to the DRE cis-element in its promoter. Taken together, the results of our study indicate that TaERF4a positively regulates the expression of the dehydrin WZY1-2 gene and enhances drought tolerance in plants. Full article

Deinococcus radiodurans is a remarkably unique microorganism, exhibiting extraordinary tolerance to extreme conditions such as ionizing radiation, ultraviolet light, and desiccation. However, the response mechanisms of D. radiodurans under low-temperature stress remain largely unexplored and have yet to be fully elucidated. The DohD protein is a hydrophilic member of the late embryogenesis abundant 3 (LEA3) family of D. radiodurans, playing a pivotal role in abiotic stress adaptation. Bioinformatics analysis revealed that DohD contains tandem repeats and disordered domains, with a remarkably high α-helix content (91.41%). Furthermore, DohD exhibits extremely low homology with other proteins, highlighting its uniqueness to D. radiodurans. Under low-temperature stress (15 °C), the expression of dohD was significantly upregulated (5-fold), regulated by a dual mechanism involving positive control by DrRRA and negative regulation by Csp. Circular dichroism spectroscopy unveiled temperature-dependent structural plasticity: as the temperature increased from 0 °C to 50° C, the α-helix content decreased from 23.5% to 18.7%, while the antiparallel β-sheet content increased from 31.3% to 50.8%. This suggests an α-helix to β-sheet interconversion mechanism as a strategy for thermal adaptation. Additionally, deletion of dohD impaired the tolerance of D. radiodurans to cold, desiccation, oxidative, and high-salt stresses, accompanied by the reduced activities of antioxidant enzymes (SOD, CAT, POD) and the downregulation of related gene expression. This study elucidates the multifunctional role of DohD in stress resistance through structural dynamics, transcriptional regulation, and redox homeostasis, providing valuable insights into the adaptation mechanisms of extremophiles. Full article

The long-term storage of forest tree seeds holds critical significance for ecological restoration, forest resource conservation, and the sustainable development of forestry. In the context of plant biodiversity conservation, enhancing seed storability to achieve efficient utilization has garnered widespread attention. Seed storability, as a complex quantitative trait, is influenced by the combined effects of intrinsic seed characteristics and external environmental factors. The complexity of this issue presents significant challenges in maintaining seed longevity, particularly in the conservation of seeds from endangered species. This review discusses the essential factors affecting seed storability and the main causes of seed aging. It emphasizes the roles of molecular mechanisms, including raffinose family oligosaccharide (RFO), heat shock protein (HSP), late embryogenesis abundant (LEA) proteins, seed storage proteins (SSPs), and hormonal regulation, in modulating seed storability. Additionally, the evaluation criteria and methodologies for assessing seed storability are elaborated. The review highlights future research challenges, aiming to provide a comprehensive scientific foundation and practical guidance to improve seed storability. This will offer theoretical support for the sustainable management of forest resources. Full article

LEA_5 domain-containing proteins constitute a small family of late embryogenesis-abundant proteins that are essential for seed desiccation tolerance and dormancy. However, their roles in non-seed storage organs such as underground tubers are largely unknown. This study presents the first genome-scale analysis of the LEA_5 family in tigernut (Cyperus esculentus L.), a Cyperaceae plant producing desiccation-tolerant tubers. Four LEA_5 genes identified from the tigernut genome are twice of two present in model plants Arabidopsis thaliana and Oryza sativa. A comparison of 86 members from 34 representative plant species revealed the monogenic origin and lineage-specific family evolution in Poales, which includes the Cyperaceae family. CeLEA5 genes belong to four out of five orthogroups identified in this study, i.e., LEA5a, LEA5b, LEA5c, and LEA5d. Whereas LEA5e is specific to eudicots, LEA5b and LEA5d appear to be Poales-specific and LEA5c is confined to families Cyperaceae and Juncaceae. Though no syntenic relationship was observed between CeLEA5 genes, comparative genomics analyses indicated that LEA5b and LEA5c are more likely to arise from LEA5a via whole-genome duplication. Additionally, local duplication, especially tandem duplication, also played a role in the family expansion in Juncus effuses, Joinvillea ascendens, and most Poaceae plants examined in this study. Structural variation (e.g., fragment insertion) and expression divergence of LEA_5 genes were also observed. Whereas LEA_5 genes in A. thaliana, O. sativa, and Zea mays were shown to be preferentially expressed in seeds/embryos, CeLEA5 genes have evolved to be predominantly expressed in tubers, exhibiting seed desiccation-like accumulation during tuber maturation. Moreover, CeLEA5 orthologs in C. rotundus showed weak expression in various stages of tuber development, which may explain the difference in tuber desiccation tolerance between these two close species. These findings highlight the lineage-specific evolution of the LEA_5 family, which facilitates further functional analysis and genetic improvement in tigernut and other species. Full article

Salt stress is a major abiotic stress that interferes with plant growth and affects crop production. Dehydrin (DHN), a member of the late embryogenesis abundant (LEA) protein family, was considered to be a stress protein involved in the protective reaction of plant dehydration. Our previous research has shown that overexpression of the Suaeda salsa SsDHN gene enhances tolerance to salt stress in tobacco. However, the research on its protection in photosynthesis under salt stress remains unclear. In this study, gene overexpression (SsDHN-OE) tobacco plants were utilized to study the effect of the SsDHN gene on plant photosynthesis under salt stress. Our findings showed that overexpression of SsDHN increased the biomass, leaf area, root length, and root surface area in tobacco seedlings under salt stress conditions. The transgenic tobacco with overexpression of SsDHN had obvious stomatal closure, which effectively alleviated the adverse effects of salt stress on photosynthetic efficiency. Overexpression of the SsDHN gene in tobacco can effectively reduce the degree of photoinhibition and chloroplast damage caused by salt stress. Moreover, the SsDHN-overexpressing transgenic tobacco plants exhibited a decrease in oxidative damage and protected membrane structures related to photosynthesis by increasing antioxidant enzyme activity and antioxidant substance content. It was further found that the expression levels of photosynthetic and antioxidant-related genes Rubisco, SBPase, POD7, CAT3, APX2, and SOD3 were significantly up-regulated by overexpressing the SsDHN gene in tobacco seedlings under salt stress. In conclusion, the SsDHN gene might improve the salt stress resistance of tobacco seedlings and be involved in regulating photosynthesis and antioxidant activity under salt stress. Full article

Dehydrins (Dhns) are a group of intrinsically disordered land plant proteins that are closely associated with tolerance of dehydrative stress. Dhns are recognized and classified by the presence and sequence of five different conserved segments, varying in length from 8 to 15 residues, separated by highly variable disordered regions. In addition to one or more copies of the diagnostic, fifteen-residue K segment, most Dhns can be classified into one of three major groups based on the mutually exclusive presence of three other conserved segments (H, Y, or F), with all three groups typically incorporating multi-serine S segments. Many Dhns also include repeat structures. From an input library of 8675 non-redundant candidate sequences, a specialized R script identified and classified 2658 complete and 236 partial Dhn sequences in all major green plant (Viridiplantae) lineages, including a few green algal genera. An examination of the connecting segments bridging the conserved segments identified additional conserved patterns, suggesting that multi-Y, S-K, and K-S domains may act as functional units. Dhn Decoder identified 857 Dhns with repeat structures, ranging from 3 short, simple repeats to elaborate variations with up to 45 repeats or repeats of up to 85 residues comprising 1 or more of the conserved segments, suggesting that internal sequence duplication is an important mode of evolution in Dhns. Full article

Drought stress is one of the major adversity stresses affecting soybean (Glycine max [L.] Merr.) yield. Late embryogenesis abundant protein (LEA protein) is a large family of proteins widely distributed in various types of organisms, and this class of proteins plays an important role in protecting proteins, membrane lipids, and lipids inside the cell. The soybean GmPM35 gene is a member of the LEA_6 subfamily. The expression of the GmPM35 gene was significantly increased after drought stress in soybeans. A subcellular localization assay confirmed that the gene acts on the cell membrane. Against wild-type Arabidopsis thaliana, we found that Arabidopsis lines overexpressing the GmPM35 gene were significantly more drought-tolerant at germination and seedling stages under drought stress. To further investigate the drought tolerance function of this gene in soybeans, nine overexpression lines of the T₃ generation soybean GmPM35 gene and two editing lines of the T₃ generation soybean GmPM35 gene were obtained by Agrobacterium-mediated method using a wild-type soybean strain (JN28) as a receptor. Germination rate, root length, chlorophyll (CHL) content, Proline (Pro) content, malondialdehyde (MDA) content, superoxide anion (O₂^•−) content, hydrogen peroxide (H₂O₂) content, (NBT, DAB) staining, and activities of antioxidant enzymes (CAT, SOD, POD), and photosynthetic physiological indexes of the three different types of strains were measured and analyzed before and after drought stress. Combined with the results of rehydration experiments and physiological and biochemical indices, we found that overexpression of the GmPM35 gene protected the activities of antioxidant enzymes under drought stress. The activities of superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) were increased by an average of 34.28%, 26.12%, and 30.01%, respectively, in soybean plants overexpressing the GmPM35 gene compared with wild-type soybeans. Under drought stress conditions, soybean plants overexpressing the GmPM35 gene showed an average increase of 76.81% in photosynthesis rate (Pn), 39.8% in transpiration rate (Tr), 126% in stomatal conductance (Gs), 47.71% in intercellular CO₂ concentration (Ci), and 26.44% in instantaneous water use efficiency (WUEi). The improvement of these indexes helped to reduce the accumulation of reactive oxygen species (ROS) in the plants. In addition, we found that under drought stress, the MDA content was reduced by an average of 18.8%, and the Pro content was increased by an average of 60.14% in soybean plants overexpressing the GmPM35 gene, and the changes in these indexes indicated that the plants had stronger antioxidant and osmoregulatory capacities in response to drought stress. In summary, this experiment demonstrated that the GmPM35 gene plays an important role in soybean tolerance to drought stress, and by overexpressing the GmPM35 gene, soybean plants can better tolerate drought stress and maintain normal physiological functions. Full article

Plants have large amounts of the late embryogenesis abundant protein (LEA) family of proteins, which is involved in osmotic regulation. The Korla Pear (Pyrus sinkiangensis Yu) is an uncommon pear species that thrives in Xinjiang and can survive below-freezing conditions. We found that the PsLEA4 gene was more expressed after cold treatment by looking at the transcriptome data of the Korla Pear. In order to evaluate the biological function of the PsLEA4 protein under low-temperature stress and its potential for use in agricultural breeding, we cloned the PsLEA4 gene from the Korla Pear, made a plant overexpression vector, and transformed it into a tomato via Agrobacterium transformation. When exposed to low temperatures, we found that PsLEA4 overexpression can regulate proline metabolism and antioxidant enzyme activity in tomatoes compared to wild tomatoes. Because of this, transgenic tomatoes are more resilient to cold temperatures and produce more than their wild counterparts. Thus, expressing PsLEA4 has multiple advantages: (1) Improving frost resistance and reducing plant damage. (2) Increasing crop yield. Therefore, this study provides a theoretical basis for the role of the PsLEA4 protein in plants’ resilience to low temperatures, as well as for its potential application in crop breeding. Full article

Late embryogenesis abundant (LEA) proteins are a class of proteins associated with osmotic regulation and plant tolerance to abiotic stress. However, studies on the LEA gene family in the alpine cold-tolerant herb are still limited, and the phylogenetic evolution and biological functions of its family members remain unclear. In this study, we conducted genome-wide identification, phylogenetic evolution, and abiotic stress response analyses of LEA family genes in Notopterygium species, alpine cold-tolerant medicinal herbs in the Qinghai–Tibet Plateau and adjacent regions. The gene family identification analysis showed that 23, 20, and 20 LEA genes were identified in three Notopterygium species, N. franchetii, N. incisum, and N. forrestii, respectively. All of these genes can be classified into six LEA subfamilies: LEA_1, LEA_2, LEA_5, LEA_6, DHN (Dehydrin), and SMP (seed maturation protein). The LEA proteins in the three Notopterygium species exhibited significant variations in the number of amino acids, physical and chemical properties, subcellular localization, and secondary structure characteristics, primarily demonstrating high hydrophilicity, different stability, and specific subcellular distribution patterns. Meanwhile, we found that the members of the same LEA subfamily shared similar exon–intron structures and conserved motifs. Interestingly, the chromosome distributions of LEA genes in Notopterygium species were scattered. The results of the collinearity analysis indicate that the expansion of the LEA gene family is primarily driven by gene duplication. A Ka/Ks analysis showed that paralogous gene pairs were under negative selection in Notopterygium species. A promoter cis-acting element analysis showed that most LEA genes possessed multiple cis-elements connected to plant growth and development, stress response, and plant hormone signal transduction. An expression pattern analysis demonstrated the species-specific and tissue-specific expression of NinLEAs. Experiments on abiotic stress responses indicated that the NinLEAs play a crucial role in the response to high-temperature and drought stresses in N. franchetii leaves and roots. These results provide novel insights for further understanding the functions of the LEA gene family in the alpine cold-tolerant Notopterygium species and also offer a scientific basis for in-depth research on the abiotic stress response mechanisms and stress-resistant breeding. Full article

Drought is one of the most serious abiotic stresses in citrus plantations. It is thus imperative to fully understand the drought-resistant mechanisms in these plants. Here, RNA-seq was used to analyze the transcriptomic changes in the roots of Poncirus trifoliata, a widely used rootstock in citrus plantations, under a 72-day soil drought and a 7-day recovery stage. Our results showed that the genes upregulated under drought were only enriched in the galactose metabolism and protein processing in endoplasmic reticulum pathways. In the galactose metabolism pathway, four genes related to the synthesis of raffinose family oligosaccharides, which act as osmoprotectants and ROS scavengers, were significantly upregulated under long-term drought. Several heat-shock protein (HSP) family genes were significantly upregulated under drought, leading to increased levels of HSPs to alleviate the endoplasmic reticulum-associated degradation of misfolded proteins induced by drought stress. Some other upregulated genes under drought, like late embryogenesis-abundant family genes and lipid transfer protein family genes, might also be crucial to the drought resistance of P. trifoliata roots. MSYJ196370 (heat-shock factor family gene) was the top hub gene in the protein–protein interaction analysis of upregulated genes under drought. These findings supplement the transcriptomic response of P. trifoliata root under long-term drought stress. Full article

Drought adversely affects plant growth, which leads to reduced crop yields and exacerbates food insecurity. Late embryogenesis abundant (LEA) proteins are crucial for plants’ responses to abiotic stresses. This research further investigates the role of SiLEA5 by utilizing transgenic tomatoes under drought stress. The expression of SiLEA5 was upregulated under drought and abscisic acid (ABA) treatment, resulting in decreased electrolyte leakage and malondialdehyde content, alongside increased levels of osmotic regulators and antioxidant enzyme activity. These biochemical alterations reduce oxidative damage and enhance drought resistance. qRT-PCR analysis revealed the upregulation of ABA signaling genes and key enzymes involved in proline biosynthesis (P5CS) and dehydrin (DHN) synthesis under drought stress. Additionally, overexpression of SiLEA5 increased the net photosynthetic rate (Pn) and fruit yield of tomatoes by regulating stomatal density and aperture. These findings suggest that SiLEA5 may be a potential target for improving drought tolerance in tomatoes and other crops. Full article