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Search Results (314)

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50 pages, 9189 KiB  
Article
Insular Mid-Pleistocene Giant Rats from the So’a Basin (Flores, Indonesia)
by Susan Hayes, Gerrit D. van den Bergh, Indra Sutisna, Halmi Insani, Unggul P. Wibowo, Ruly Setiawan, Iwan Kurniawan and Samuel T. Turvey
Quaternary 2025, 8(3), 44; https://doi.org/10.3390/quat8030044 - 4 Aug 2025
Viewed by 248
Abstract
Excavations undertaken at Mata Menge, the securely dated Middle Pleistocene open site on the Indonesian island of Flores, have resulted in the recovery of over 670 well-preserved fossil murine molars from two distinct stratigraphic intervals. This research is the first systematic metric and [...] Read more.
Excavations undertaken at Mata Menge, the securely dated Middle Pleistocene open site on the Indonesian island of Flores, have resulted in the recovery of over 670 well-preserved fossil murine molars from two distinct stratigraphic intervals. This research is the first systematic metric and morphological analysis of this material, with the results indicating the predominance of a single murine species, though the finds from the lower interval (0.7 million years ago) are for the most part significantly smaller than those recovered from the ~70,000-year-younger upper interval. Comparison of our findings with the analyses of the Flores endemic recent and fossil giant rats undertaken by Hooijer in 1957 and Musser in 1981 indicates the Mata Menge large murine maxillary molars, and, in particular, those from the lower interval are very similar to the limited Middle Pleistocene material Musser designated to be Hooijeromys nusatenggara. However, the associated Mata Menge mandibular molars are most similar to, though smaller than, the mid-Holocene Papagomys theodorverhoeveni. In addition to providing a detailed reference for future studies of large fossil murines excavated from Wallacea, our findings indicate Musser’s reassignment of Hooijer’s maxillary holotype of P. verhoeveni to P. armandvillei would benefit from re-examination. Full article
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17 pages, 8716 KiB  
Article
Description of a New Species of Hainania Koller (Teleostei, Cypriniformes, Xenocyprididae) from Guangdong Province, Southern China
by Haotian Lei, Ziyu Gong and Xuankun Li
Diversity 2025, 17(8), 549; https://doi.org/10.3390/d17080549 - 1 Aug 2025
Viewed by 482
Abstract
Hainania Koller (Teleostei, Cypriniformes, Xenocyprididae) is known as a monotypic genus of sharpbelly fish that is endemic to Hainan Island, China. We describe Ha. minzhengi sp. nov., the second species of Hainania collected from Guangdong, based on morphology and molecular evidence. [...] Read more.
Hainania Koller (Teleostei, Cypriniformes, Xenocyprididae) is known as a monotypic genus of sharpbelly fish that is endemic to Hainan Island, China. We describe Ha. minzhengi sp. nov., the second species of Hainania collected from Guangdong, based on morphology and molecular evidence. Phylogenetic relationships were inferred based on the mitochondrial cytochrome b (Cyt b) gene and cytochrome oxidase subunit 1 (COI) gene, by maximum likelihood and Bayesian methods and different partitioning schemes. Our result supports the sister group relationship between Ha. serrata and Ha. minzhengi sp. nov., but the monophyly of Pseudohemiculter or Hemiculterella was not recovered. A diagnostic key to Chinese species of Hainania and Pseudohemiculter is provided. Full article
(This article belongs to the Special Issue Evolution, Systematic and Conservation of Freshwater Fishes)
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37 pages, 3945 KiB  
Article
Taxonomy of Dissomphalus Ashmead (Hymenoptera, Bethylidae) from Fiji and Solomon Islands, with Description of Twenty-Seven New Species
by João Lorenzo M. Nunes, Celso O. Azevedo and Wesley D. Colombo
Taxonomy 2025, 5(3), 39; https://doi.org/10.3390/taxonomy5030039 - 30 Jul 2025
Viewed by 237
Abstract
This study presents a comprehensive taxonomic revision of the genus Dissomphalus Ashmead (Hymenoptera, Bethylidae) in the southwestern Pacific, focusing on specimens from Fiji and the Solomon Islands. Dissomphalus is the most species-rich genus within Bethylidae, with a global distribution, yet it remains poorly [...] Read more.
This study presents a comprehensive taxonomic revision of the genus Dissomphalus Ashmead (Hymenoptera, Bethylidae) in the southwestern Pacific, focusing on specimens from Fiji and the Solomon Islands. Dissomphalus is the most species-rich genus within Bethylidae, with a global distribution, yet it remains poorly documented in the Oceanian region. We examined 151 male specimens collected in these islands. As a result, we describe 27 new species, 25 from Fiji and 2 from the Solomon Islands. Diagnostic morphological features, detailed illustrations, and an identification key for all species are provided. These findings substantially expand the known diversity of Dissomphalus in Oceania. Our results underscore the importance of taxonomic research in underexplored regions and highlight the potential for high levels of species endemism in island ecosystems. This revision contributes to a better understanding of the genus’ biogeographical distribution and provides essential tools for future biodiversity assessments and conservation efforts in the southwestern Pacific. Full article
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29 pages, 1985 KiB  
Review
Wild Species from the Asteraceae Family, Traditionally Consumed in Some Mediterranean Countries
by Ekaterina Kozuharova, Giuseppe Antonio Malfa, Rosaria Acquaviva, Benito Valdés, Daniela Batovska, Christina Stoycheva, Moh Rejdali, Pasquale Marino and Vivienne Spadaro
Plants 2025, 14(13), 2006; https://doi.org/10.3390/plants14132006 - 30 Jun 2025
Viewed by 482
Abstract
Mediterranean countries represent a dynamic hub of cultural exchange, where wild plants play a significant role in culinary traditions. A substantial number of these plants belong to the Asteraceae family. The climate similarities across the region contribute to the common distribution ranges of [...] Read more.
Mediterranean countries represent a dynamic hub of cultural exchange, where wild plants play a significant role in culinary traditions. A substantial number of these plants belong to the Asteraceae family. The climate similarities across the region contribute to the common distribution ranges of the plants. While many species are widely distributed, others are confined to specific subregions, such as the western Mediterranean, eastern Mediterranean, or North Africa. Only six taxa of the traditionally consumed wild Asteraceae plants are endemic to just one country. This review focuses on wild plants from the Asteraceae family traditionally used as food across 13 study sites, comprising 11 countries in the Mediterranean and adjacent territories, including both mainland areas and three islands. The objective is to identify and analyze patterns of native distribution in relation to actual consumption. As a result, 167 edible wild plants from the Asteraceae family were identified. Their patterns of distribution and consumption are described and analyzed. The highest number of these edible wild plants from the Asteraceae family is consumed in Spain (n = 65), followed by southern Italy (n = 44) and Morocco (n = 32). A similar pattern of consumption is seen in Turkey (n = 24), Sicily (n = 23), Jordan and Palestine (n = 21), and Bulgaria (n = 21). It is notable that 106 plants are used as food in one particular country only, although most of them are distributed in several other countries. Many of the species consumed in certain countries are not used by neighboring populations, highlighting a limited cross-border transmission of ethnobotanical knowledge. The findings from a Jaccard index statistical analysis are discussed. Full article
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14 pages, 2952 KiB  
Article
TreeGrid: A Spatial Planning Tool Integrating Tree Species Traits for Biodiversity Enhancement in Urban Landscapes
by Shrey Rakholia, Reuven Yosef, Neelesh Yadav, Laura Karimloo, Michaela Pleitner and Ritvik Kothari
Animals 2025, 15(13), 1844; https://doi.org/10.3390/ani15131844 - 22 Jun 2025
Viewed by 545
Abstract
Urbanization, habitat fragmentation, and intensifying urban heat island (UHI) effects accelerate biodiversity loss and diminish ecological resilience in cities, particularly in climate-vulnerable regions. To address these challenges, we developed TreeGrid, a functionality-based spatial tree planning tool designed specifically for urban settings in the [...] Read more.
Urbanization, habitat fragmentation, and intensifying urban heat island (UHI) effects accelerate biodiversity loss and diminish ecological resilience in cities, particularly in climate-vulnerable regions. To address these challenges, we developed TreeGrid, a functionality-based spatial tree planning tool designed specifically for urban settings in the Northern Plains of India. The tool integrates species trait datasets, ecological scoring metrics, and spatial simulations to optimize tree placement for enhanced ecosystem service delivery, biodiversity support, and urban cooling. Developed within an R Shiny framework, TreeGrid dynamically computes biodiversity indices, faunal diversity potential, canopy shading, carbon sequestration, and habitat connectivity while simulating localized reductions in land surface temperature (LST). Additionally, we trained a deep neural network (DNN) model using tool-generated data to predict bird habitat suitability across diverse urban contexts. The tool’s spatial optimization capabilities are also applicable to post-fire restoration planning in wildland–urban interfaces by guiding the selection of appropriate endemic species for revegetation. This integrated framework supports the development of scalable applications in other climate-impacted regions, highlighting the utility of participatory planning, predictive modeling, and ecosystem service assessments in designing biodiversity-inclusive and thermally resilient urban landscapes. Full article
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15 pages, 2387 KiB  
Article
First Preliminary Molecular Assessment of Ants from Cabo Verde
by Michael Joseph Jowers, Franco Guouman Ferreyra, Stephane Caut, José Carlos Brito and Raquel Vasconcelos
Genes 2025, 16(7), 725; https://doi.org/10.3390/genes16070725 - 22 Jun 2025
Viewed by 501
Abstract
Background/Objectives: Ants are one of the most abundant animal groups on the planet and have a considerable impact on ecosystems. In the Cabo Verde Archipelago, the study of invertebrates is very scarce and ants are no exception. Methods: In this work we focus [...] Read more.
Background/Objectives: Ants are one of the most abundant animal groups on the planet and have a considerable impact on ecosystems. In the Cabo Verde Archipelago, the study of invertebrates is very scarce and ants are no exception. Methods: In this work we focus on the taxonomic analysis of formicids and study their distribution and the possible presence of invasive species in the Cabo Verde Islands. In addition, the diversity of Cabo Verde ants is compared with that of the closest African coastal countries, Senegal and Mauritania, to study a possible colonization of African ants into the archipelago. For this, we use two molecular markers, cytochrome oxidase I and the wingless gene, to perform phylogenetic analyses and haplotype networks that facilitate identification. Results: Nine taxa were identified, five invasive species, Paratrechina longicornis, Pheidole megacephala, Trichomyrmex destructor, Brachyponera sennaarensis, and Solenopsis globularia, one endemic Monomorium subopacum and three unidentified species of native genera, Monomorium sp., Lepisiota sp. Camponotus sp. Conclusions: Molecular network patterns as well as phylogenetic analyses suggest that ants are widespread throughout the archipelago, a likely consequence of human introductions. Full article
(This article belongs to the Collection Feature Papers in ‘Animal Genetics and Genomics’)
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16 pages, 2983 KiB  
Article
Birds as Biodiversity Beacons: Identifying Conservation Priority Areas Through Multi-Dimensional Diversity in China
by Fei Duan, Shuyi Zhu, Xiaoyun Shi, Xiaoli Shen and Sheng Li
Diversity 2025, 17(7), 442; https://doi.org/10.3390/d17070442 - 21 Jun 2025
Viewed by 374
Abstract
Biodiversity conservation plays a pivotal role in achieving sustainable development and fostering harmonious coexistence between humans and nature. This study identifies avian conservation priority areas across China by analyzing multi-dimensional biodiversity, incorporating species diversity, functional diversity, and phylogenetic diversity. Through systematic conservation planning [...] Read more.
Biodiversity conservation plays a pivotal role in achieving sustainable development and fostering harmonious coexistence between humans and nature. This study identifies avian conservation priority areas across China by analyzing multi-dimensional biodiversity, incorporating species diversity, functional diversity, and phylogenetic diversity. Through systematic conservation planning using Zonation version 4 software, we delineated priority areas across these diversity dimensions. Our results demonstrate a distinct south-to-north diversity gradient in China’s avifauna, with functional and phylogenetic diversity hotspots concentrated in Yunnan Province, the Hengduan Mountains, Hainan Island, Taiwan Island, and southeastern coastal regions. The identified priority conservation areas cover 14.6% of China’s terrestrial territory, protecting 89.8% of the country’s bird species—including 93.5% of endemic species and 88.9% of critically endangered species. Notably, existing nature reserves encompass merely 8.1% of these priority areas, revealing substantial conservation gaps within the current protection framework. Building upon China’s 3C Zoning Framework (Cities and farms, Shared landscapes, and Large wild areas), we propose zone-specific conservation strategies, with particular emphasis on strengthening protected area networks in the eastern coastal regions and the middle-lower Yangtze River basin, where urbanization pressures are most acute. These findings highlight the critical importance of incorporating multi-dimensional diversity in conservation planning and offer novel perspectives for optimizing China’s protected area system. Full article
(This article belongs to the Section Biodiversity Conservation)
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12 pages, 8905 KiB  
Communication
First Recorded Evidence of Invasive Rodent Predation on a Critically Endangered Galápagos Petrel (Pterodroma phaeopygia) Nestling in the Galápagos Islands
by Isabela Tapia-Jaramillo, Joel Arica, Alejandra Espín, Víctor Carrión, Juan Pablo Mayorga, Christian Sevilla, Eliécer Cruz and Paola Sangolquí
Birds 2025, 6(3), 33; https://doi.org/10.3390/birds6030033 - 20 Jun 2025
Viewed by 589
Abstract
The Galápagos Petrel (Pterodroma phaeopygia) is a long-lived Critically Endangered seabird endemic to the Galápagos Islands and faces severe threats from invasive species, particularly rodents. Until now, evidence of rat predation on Galápagos Petrel nestlings has been largely indirect, inferred from [...] Read more.
The Galápagos Petrel (Pterodroma phaeopygia) is a long-lived Critically Endangered seabird endemic to the Galápagos Islands and faces severe threats from invasive species, particularly rodents. Until now, evidence of rat predation on Galápagos Petrel nestlings has been largely indirect, inferred from indirect evidence and predator control outcomes. Here, we present the first photographic documentation of a presumed black rat (Rattus rattus) preying on a Galápagos Petrel nestling, captured by a camera trap on private farmland on Santa Cruz Island. The predation event occurred during a period of parental absence, when the nestling was left unattended while adults foraged at sea. Notably, the parent Petrels continued returning to the nest for 91 days following nestling loss, suggesting strong nest fidelity and highlighting potential energetic costs associated with breeding failure. Our findings reveal critical vulnerabilities during the nestling-rearing phase and emphasize the urgent need to enhance rodent control efforts and protect nesting areas, particularly on farmland outside the Galápagos National Park boundaries. We conclude by providing targeted conservation recommendations to mitigate invasive predator impacts and improve breeding success for this emblematic and imperiled seabird. Full article
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13 pages, 947 KiB  
Article
New Insights into the Phylogeographic History of Dirofilaria immitis in the Canary Islands, Spain
by Rodrigo Morchón, Alfonso Balmori-de la Puente, Manuel Collado-Cuadrado, Iván Rodríguez-Escolar, Noelia Costa-Rodríguez, Elena Infante González-Mohino, Elena Carretón and José Alberto Montoya-Alonso
Animals 2025, 15(12), 1694; https://doi.org/10.3390/ani15121694 - 8 Jun 2025
Viewed by 571
Abstract
Heartworm disease (Dirofilaria immitis) is an important zoonotic infection of major clinical importance in dogs widespread, and transmitted by culicid vectors. Although D. immitis mostly affects dogs with an overall low incidence, some islands of the Atlantic archipelagos such as the [...] Read more.
Heartworm disease (Dirofilaria immitis) is an important zoonotic infection of major clinical importance in dogs widespread, and transmitted by culicid vectors. Although D. immitis mostly affects dogs with an overall low incidence, some islands of the Atlantic archipelagos such as the island of Gran Canaria (Canary Islands, Spain) had one of the highest historical prevalence/seroprevalence values in dogs, cats and humans. Molecular tools allow us to perform species identification diagnosis, phylogeographic and population genetics analysis that can provide key information about the factors making the disease still a threat (uncover untreated range of hosts, putative origin, etc.). In this study, we have optimized primers to amplify mitochondrial (COI, 12S) and nuclear (ITS) molecular markers from adult D. immitis worms. The genetic diversity and structure of D. immitis at the global level is limited, especially when compared with results obtained for other species of the same genus, such as D. repens. New minor haplotypes in the mitochondrial COI marker have been identified from adult D. immitis worms from infected dogs from the hyperendemic island of Gran Canaria, suggesting that the disease may have originated locally or may have been introduced from the mainland in historical times and evolved in isolation. To obtain a more complete understanding of its evolutionary history, structure and genomic diversity, comparative studies using next-generation sequencing data from endemic areas are needed, which will help in the long term to implement monitoring and control measures in a given area and to better understand its global phylogeographic history. Full article
(This article belongs to the Special Issue Vector-Borne and Zoonotic Diseases in Dogs and Cats: Second Edition)
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51 pages, 11577 KiB  
Article
Projected Impacts of Climate and Land Use Change on Endemic Plant Distributions in a Mediterranean Island Hotspot: The Case of Evvia (Aegean, Greece)
by Konstantinos Kougioumoutzis, Ioannis P. Kokkoris, Panayiotis Trigas, Arne Strid and Panayotis Dimopoulos
Climate 2025, 13(5), 100; https://doi.org/10.3390/cli13050100 - 13 May 2025
Viewed by 1913
Abstract
Anthropogenic climate and land use change pose major threats to island floras worldwide, yet few studies have integrated these drivers in a single vulnerability assessment. Here, we examine the endemic flora of Evvia, the second-largest Aegean island in Greece and an important biodiversity [...] Read more.
Anthropogenic climate and land use change pose major threats to island floras worldwide, yet few studies have integrated these drivers in a single vulnerability assessment. Here, we examine the endemic flora of Evvia, the second-largest Aegean island in Greece and an important biodiversity hotspot, as a model system to address how these disturbances may reshape species distributions, community composition, and phylogenetic diversity patterns. We used species distribution models under the Ensemble of Small Models and the ENphylo framework, specifically designed to overcome parameter uncertainty in rare species with inherently limited occurrence records. By integrating climate projections and dynamic land use data, we forecasted potential range shifts, habitat fragmentation, and biodiversity patterns for 114 endemic taxa through the year 2100. We addressed transferability uncertainty, a key challenge in projecting distributions under novel conditions, using the Shape framework extrapolation analysis, thus ensuring robust model projections. Our findings reveal pronounced projected range contractions and increased habitat fragmentation for all studied taxa, with more severe impacts on single-island endemics. Our models demonstrated high concordance with established IUCN Red List assessments, validating their ecological relevance despite the sample size limitations of single-island endemics. Current biodiversity hotspots, primarily located in mountainous regions, are expected to shift towards lowland areas, probably becoming extinction hotspots due to projected species losses, especially for Evvia’s single-island endemics. Emerging hotspot analysis identified new biodiversity centres in lowland zones, while high-altitude areas showed sporadic hotspot patterns. Temporal beta diversity analysis indicated higher species turnover of distantly related taxa at higher elevations, with closely related species clustering at lower altitudes. This pattern suggests a homogenisation of plant communities in lowland areas. The assessment of protected area effectiveness revealed that while 94.6% of current biodiversity hotspots are within protected zones, this coverage is projected to decline by 2100. Our analysis identified conservation gaps, highlighting areas requiring urgent protection to preserve future biodiversity. Our study reveals valuable information regarding the vulnerability of island endemic floras to global change, offering a framework applicable to other insular systems. Our findings demonstrate that adaptive conservation strategies should account for projected biodiversity shifts and serve as a warning for other insular biodiversity hotspots, urging immediate actions to maintain the unique evolutionary heritage of islands. Full article
(This article belongs to the Section Climate and Environment)
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25 pages, 8520 KiB  
Article
The Distribution, Similarity, and Conservation Status of the Amphibians and Reptiles of the Biogeographic Provinces of Northwestern Mexico
by Julio A. Lemos-Espinal and Geoffrey R. Smith
Diversity 2025, 17(5), 304; https://doi.org/10.3390/d17050304 - 22 Apr 2025
Viewed by 841
Abstract
The herpetofaunal diversity of northwestern Mexico, encompassing the Californian, Baja California, and Sonoran Desert biogeographic provinces, is characterized by relatively low species richness but a high degree of endemism. This region, particularly the islands of the Gulf of California, is recognized as a [...] Read more.
The herpetofaunal diversity of northwestern Mexico, encompassing the Californian, Baja California, and Sonoran Desert biogeographic provinces, is characterized by relatively low species richness but a high degree of endemism. This region, particularly the islands of the Gulf of California, is recognized as a biodiversity hotspot. However, amphibian and reptile species in this area, especially those on the Gulf islands, are facing significant threats to their survival, including non-native species, habitat loss, and climate change. These factors pose considerable challenges to their conservation. In this study, we compiled updated lists of amphibian and reptile species across these three provinces, assessed their conservation status, identified the threats they face, and compared them with those in neighboring biogeographic provinces. Our analysis recorded a total of 228 species, comprising 29 amphibians and 199 reptiles, with a notable proportion of endemics, particularly in Baja California. Amphibians, due to the region’s arid conditions, are underrepresented and generally face a lower level of conservation concern. In contrast, reptiles, especially those on the islands, are at higher risk, primarily due to habitat loss, invasive species, and climate change. Of the 228 species, one amphibian and 21 reptiles are classified in a category of conservation concern (Vulnerable, Endangered, Critically Endangered) by the International Union for Conservation of Nature (IUCN) Red List. In addition, 47 species (one amphibian and 46 reptiles) are listed as threatened (A) or at risk of extinction (P) by the Secretaría del Medio Ambiente y Recursos Naturales (SEMARNAT). These findings emphasize the urgent need for conservation strategies, particularly for island reptile species, that involve collaboration among scientists, local communities, and federal and state authorities to address these threats and safeguard the region’s herpetofauna. Similarity analysis revealed significant ecological connectivity among the amphibian and reptile communities across the three provinces. The similarity in species between the Californian, Baja California, and Sonoran Desert provinces highlights the role of historical climatic events, geographic barriers, and ecological factors in shaping species distributions of amphibians and reptiles in northwestern Mexico. Full article
(This article belongs to the Special Issue Animal Diversity Hot Topics in 2025)
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21 pages, 9756 KiB  
Article
Extensive DNA Barcoding of Lepidoptera of Crete (Greece) Reveals Significant Taxonomic and Faunistic Gaps and Supports the First Comprehensive Checklist of the Island’s Fauna
by Peter Huemer, Kai Berggren, Leif Aarvik, Erwin Rennwald, Axel Hausmann, Andreas Segerer, Giorgia Staffoni, Aina Mærk Aspaas, Apostolos Trichas and Paul D. N. Hebert
Insects 2025, 16(5), 438; https://doi.org/10.3390/insects16050438 - 22 Apr 2025
Cited by 1 | Viewed by 1842
Abstract
Comprehensive genetic surveys of Lepidoptera are still largely lacking across most of the eastern Mediterranean. Consequently, there is a lack of modern, taxonomically validated checklists that meet current scientific standards. In this study, we analyze the butterfly and moth fauna of Crete (Greece) [...] Read more.
Comprehensive genetic surveys of Lepidoptera are still largely lacking across most of the eastern Mediterranean. Consequently, there is a lack of modern, taxonomically validated checklists that meet current scientific standards. In this study, we analyze the butterfly and moth fauna of Crete (Greece) for the first time, based on 3110 DNA barcode sequences, primarily obtained from specimens based on our own sampling program. Building on these data, and incorporating previously published records from print sources and online forums, we establish the first comprehensive checklist of the island’s fauna. In total, the occurrence of 1230 species from 62 families is confirmed, with 724 of them genetically verified. Among them, 75 species appear to be island endemics. The checklist includes 125 newly recorded species for Crete, validated by DNA barcoding (with 36 also being new for Greece), along with 23 species confirmed solely through morphological study, and another 16 only documented by photographs. Conversely, 212 previously reported species had to be removed as likely invalid. Furthermore, 112 unidentified sequence clusters (BINs—Barcode Index Numbers) were documented, taxonomic uncertainties that will require future integrative resolution. Full article
(This article belongs to the Section Insect Systematics, Phylogeny and Evolution)
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17 pages, 2444 KiB  
Article
Integrative Description of Temnothorax siculus sp. n.: A New Ant Species from Sicily, Italy (Hymenoptera, Formicidae)
by Enrico Schifani, Antonio Alicata, Matthew M. Prebus and Sándor Csősz
Diversity 2025, 17(4), 294; https://doi.org/10.3390/d17040294 - 19 Apr 2025
Viewed by 732
Abstract
The mostly Holarctic genus Temnothorax (Hymenoptera, Formicidae) is the most diverse ant genus in temperate regions. The Mediterranean, a biodiversity hotspot of rare ant species, hosts over 150 Temnothorax taxa, including several short-range endemics. Over the last few years, phylogenomic reconstructions and integrative [...] Read more.
The mostly Holarctic genus Temnothorax (Hymenoptera, Formicidae) is the most diverse ant genus in temperate regions. The Mediterranean, a biodiversity hotspot of rare ant species, hosts over 150 Temnothorax taxa, including several short-range endemics. Over the last few years, phylogenomic reconstructions and integrative taxonomy have significantly improved the understanding of global Temnothorax diversity, but much taxonomic work is still needed in the Mediterranean region. Here, we present the integrative description of a new species of the genus, discovered in the central Mediterranean island of Sicily: Temnothorax siculus sp. n. is defined and compared to congeneric species integrating morphometrics and phylogenomics. It is a ground-nesting, lowland species, of which workers were regularly observed foraging on bushes and small trees. In the global phylogeny, covering all the main lineages of the region, it belongs to the Palearctic clade and is related to the tuberum and unifasciatus complexes. Morphological separation from other Sicilian Temnothorax species can generally be achieved on qualitative characters, but we also provide morphometric discriminant functions to separate it from T. apenninicus and especially T. unifasciatus. Temnothorax siculus has been rarely collected but appears to be widespread in Sicily, and may occur in neighboring regions. Full article
(This article belongs to the Special Issue Systematics, Evolution and Diversity in Ants)
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19 pages, 30070 KiB  
Article
Introgressive Hybridization and a Natural Barrier: Molecular Analyses Lay Out a Conservation Blueprint for the Critically Endangered Vietnamese Pond Turtle (Mauremys annamensis)
by Hanh T. Ngo, Timothy E. M. McCormack, Ha V. Hoang, Luan T. Nguyen, Thuy T. Nguyen, Van T. H. Nguyen, Hao T. Do, Ha L. T. Trinh, Thomas Ziegler, Mary E. Blair and Minh D. Le
Diversity 2025, 17(4), 260; https://doi.org/10.3390/d17040260 - 7 Apr 2025
Viewed by 863
Abstract
The critically endangered Vietnamese Pond Turtle (Mauremys annamensis), an endemic species occurring in a small lowland area in central Vietnam, has been virtually extirpated from its natural range. As a result, reintroduction of held individuals worldwide, especially from Europe, the United [...] Read more.
The critically endangered Vietnamese Pond Turtle (Mauremys annamensis), an endemic species occurring in a small lowland area in central Vietnam, has been virtually extirpated from its natural range. As a result, reintroduction of held individuals worldwide, especially from Europe, the United States, and Vietnam, will play a vital role in species recovery programs. Nevertheless, the discordance between different molecular markers in inferring the placements of two closely related species, M. annamensis and M. mutica, and the existence of two distinct mitochondrial lineages within M. annamensis, have hindered conservation strategies to properly maintain the genetic integrity of held populations to release individuals back to their natural habitat in the future. In this study, we sequenced 732 bps of a mitochondrial gene (ND4) and 1038 bps of an intron fragment of the RNA fingerprint protein 35 (R35) gene for 18 samples collected from the local trade in five provinces in Vietnam and 20 samples from founders in the Turtle Conservation Centre, Cuc Phuong National Park, Vietnam. DNA sequences analyzed by Bayesian Inference, Maximum Likelihood, and NeighborNet methods show that the Vietnamese Pond Turtle is a well-defined species and that the population of M. mutica from Hainan Island likely evolved through introgression between a lineage distantly related to true M. mutica and M. annamensis and a lineage closely related to the two mitochondrial haplotypes of M. annamensis. Interestingly, our analyses of samples collected from the local trade and those with known localities reveal that the two extant mitochondrial lineages within M. annamensis are geographically isolated and evolutionarily significant. Based upon the new findings, we recommend genetic screening for all held populations in Vietnam and elsewhere and that animals with different genetic histories be managed separately. In addition, it is important to use other molecular markers, such as microsatellites and single nucleotide polymorphisms (SNPs), to determine potential hybrids between the two mitochondrial haplotypes and remove them from conservation breeding programs before releasing the turtles back to their natural habitat. Full article
(This article belongs to the Section Biodiversity Conservation)
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22 pages, 8647 KiB  
Article
Genomic Signatures of Environmental Adaptation in Castanopsis hainanensis (Fagaceae)
by Sha Li, Xing Chen, Yang Wu and Ye Sun
Plants 2025, 14(7), 1128; https://doi.org/10.3390/plants14071128 - 5 Apr 2025
Viewed by 591
Abstract
As an endemic Castanopsis species on Hainan Island, Castanopsis hainanensis Merr. is uniquely adapted to tropical climatic conditions and occupies a relatively narrow habitat range. Given its long generation times, limited dispersal capacity, and ecological and economic importance, understanding the genomic processes shaping [...] Read more.
As an endemic Castanopsis species on Hainan Island, Castanopsis hainanensis Merr. is uniquely adapted to tropical climatic conditions and occupies a relatively narrow habitat range. Given its long generation times, limited dispersal capacity, and ecological and economic importance, understanding the genomic processes shaping this dominant tree species is critical for conservation. Its adaptation to specialized habitats and distinct geographical distribution provide valuable insights into biodiversity challenges in island ecosystems. This study employs genome-wide single-nucleotide polymorphism (SNP) markers to investigate genetic structure, population dynamics, and adaptive variation. Analyses revealed weak genetic divergence among populations, suggesting high gene flow. Demographic reconstruction indicated a historical population bottleneck, consistent with MaxEnt modeling projections of future range contraction under climate change. Selective sweep and genotype–environment association (GEA) analyses identified SNPs strongly correlated with environmental variables, particularly moisture and temperature. Using these SNPs, we quantified the risk of non-adaptedness (RONA) across climate scenarios, pinpointing regions at heightened vulnerability. Gene Ontology (GO) enrichment highlighted the key genes involved in plant growth and stress adaptation. By integrating genomic and environmental data, this study establishes a framework for deciphering adaptive mechanisms of C. hainanensis and offers actionable insights for informed conservation strategies to mitigate climate-driven biodiversity loss. Full article
(This article belongs to the Special Issue Plant Phylogeny, Taxonomy and Evolution)
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