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Search Results (1,741)

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Keywords = intestinal aging

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19 pages, 3249 KB  
Article
Young Human-Derived Microbiota Ameliorates Cognitive Decline and Reproductive Senescence in Aged Mice
by Xiaoying Zhang, Fang Chen, Yinghua Luo, Daotong Li, Junfu Ji, Lingjun Ma, Chen Ma and Xiaosong Hu
Nutrients 2026, 18(8), 1193; https://doi.org/10.3390/nu18081193 - 10 Apr 2026
Abstract
Background/Objectives: Age-related gut microbiota dysbiosis leads to systemic oxidative stress, chronic inflammation, and multi-organ functional decline. However, there is limited evidence supporting microbiota-based therapies for aging. This study aimed to examine the effect of gut microbiota from young donors, particularly those with [...] Read more.
Background/Objectives: Age-related gut microbiota dysbiosis leads to systemic oxidative stress, chronic inflammation, and multi-organ functional decline. However, there is limited evidence supporting microbiota-based therapies for aging. This study aimed to examine the effect of gut microbiota from young donors, particularly those with increasing Bifidobacteria levels through dietary intervention, on age-related declines in fertility, cognition, and reproduction. Methods: We conducted experiments using gut microbiota from young human donors, with or without pre-conditioning with barley leaves (BL), to transplant into aged male mice. Hippocampal metabolome and behavioral assessments were used to identify differences in recognitive regulation during aging. Moreover, testis tissue, semen quality, and offspring studies were determined to investigate the beneficial effects on fertility and underlying mechanism. Conclusions: This preliminary dietary treatment promotes the growth of Bifidobacterium in aged recipient mice. Aged male mice received young fecal microbiota transplants (yFMTs), BL-conditioned yFMTs (BLyFMTs), and a combined treatment of BLyFMT plus recipient BL supplementation. The combined approach significantly increased intestinal Bifidobacterium levels and effectively restored hippocampal metabolomic profiles and cognitive behavior. Additionally, yFMT-based treatments mitigated structural damage to the seminiferous tubules and prevented the germ cell depletion. Consistently, those interventions improved sperm quality and mechanistically enhanced hypothalamic–pituitary–gonadal (HPG) axis activity in aged recipients. These findings highlight Bifidobacterium as a key factor in microbiome-driven rejuvenation, enhancing the effectiveness of yFMTs in addressing aging-related declines. Full article
(This article belongs to the Section Geriatric Nutrition)
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13 pages, 1362 KB  
Article
Mimotope Peptides of Salmonella Typhi AgVi Are Recognized by Anti-Vi Antigen Sera, Anti-Mimotope Peptides, and Human Sera
by Armando Navarro-Ocaña, Armando Navarro-Cid del Prado, Ricardo Ernesto Ahumada-Cota and Ulises Hernández-Chiñas
Microbiol. Res. 2026, 17(4), 79; https://doi.org/10.3390/microbiolres17040079 - 10 Apr 2026
Abstract
Intestinal infections caused by Salmonella enterica serovar Typhi (S. Typhi) remain a global health concern, making preventive strategies and diagnostic tools essential. This study aimed to identify mimotope peptides of the Vi antigen using phage display and assess their recognition by [...] Read more.
Intestinal infections caused by Salmonella enterica serovar Typhi (S. Typhi) remain a global health concern, making preventive strategies and diagnostic tools essential. This study aimed to identify mimotope peptides of the Vi antigen using phage display and assess their recognition by rabbit and 46 human sera, as well as their potential for diagnosis and immunogen design. Rabbits were immunized with the Vi antigen (AgVi) from S. Typhi ATCC 6539, and sera-derived IgG was used for phage biopanning. DNA sequences from selected phagotopes were synthesized as Salmonella mimotope peptides (SMPs), either linear or KLH-conjugated. Their reactivity was tested with ELISAs against AgVi and SMPs, using both rabbit sera and 46 human serum samples. Ten phagotopes were identified, with a consensus motif (D/G–A/V–x–P–x–x–G–x–x–x–x–x), suggesting α-helix structures. Immunization with KLH-conjugated peptides generated specific antibodies, particularly SMPVi/5 and SMPVi/10, which recognized AgVi and their respective peptides. Competitive inhibition assays confirmed that SMPVi/5 reduced the anti-AgVi binding in a dose-dependent manner. In human sera, AgVi recognition occurred in 52% of samples, while SMPVi/5 and SMPVi/10 were recognized in 45%. Overall, SMPVi/5 demonstrated immunogenicity and functional mimicry, supporting its use as a synthetic reagent for serological assays and as a candidate for immunogen design. Full article
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12 pages, 2152 KB  
Article
Age-Related Decline in Intestinal Villus Length: A Cross-Sectional Study on the Human Gut
by Francisco Vara-Luiz, Carolina Palma, Ivo Mendes, Francisco Piçarra, Ana Elisa Teles, Filipe Nogueira, Inês Costa-Santos, Gonçalo Nunes, Marta Patita, Irina Mocanu, Sara Pires, Tânia Meira, Ana Vieira, Pedro Pinto-Marques, Paulo Mascarenhas, Iryna Leskiv, Daniel Gomes-Pinto and Jorge Fonseca
Nutrients 2026, 18(8), 1172; https://doi.org/10.3390/nu18081172 - 8 Apr 2026
Viewed by 202
Abstract
Background/Objectives: There is widespread agreement that age is a significant predictor of impaired response to nutritional support. This is generally attributed to anabolic resistance, with impaired absorption considered irrelevant/non-existent. However, animal models demonstrate age-related structural changes in the intestinal mucosa that may [...] Read more.
Background/Objectives: There is widespread agreement that age is a significant predictor of impaired response to nutritional support. This is generally attributed to anabolic resistance, with impaired absorption considered irrelevant/non-existent. However, animal models demonstrate age-related structural changes in the intestinal mucosa that may reduce absorptive capacity. We aimed to evaluate potential histological changes in the duodenal mucosa associated with aging. Methods: We conducted a single-center observational cross-sectional study. Ambulatory younger (18–45 years) and older (≥70 years) adults referred for upper endoscopy were included and underwent duodenal biopsies. Those biopsies were analyzed and compared for histological/histomorphometric changes, including villus length. Clinical and laboratory data were also recorded. Results: One hundred patients were included (46 men/54 women), 50 aged 18–45 years and 50 aged ≥70 years. There were no duodenal endoscopic changes. The median villus length was 0.35 mm (IQR 0.32–0.41 mm) in older people, lower than in younger adults (0.57 mm; IQR 0.47–0.68 mm) (p < 0.001). In a multivariable regression model including age, sex, and Charlson comorbidity index, age remained inversely associated with villus length (p < 0.001). Older participants also exhibited lower hemoglobin, iron, folate, vitamin B12, albumin and vitamin D levels, despite normal inflammatory markers. Conclusions: Aging is associated with histological changes in the intestinal mucosa, including villus shortening. These findings support the concept of mucosal aging as a distinct biological process. Villus shortening may reflect reduced absorptive surface area and could contribute to age-related nutritional vulnerability, although its functional implications remain to be determined. Full article
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35 pages, 1245 KB  
Review
Aging in 3D: Organoid Systems as Models to Uncover Cellular Senescence and Therapeutic Targets Across Diseases
by Shilpa Bisht, Paras Varshney and Abhishek Gupta
Targets 2026, 4(2), 12; https://doi.org/10.3390/targets4020012 - 2 Apr 2026
Viewed by 509
Abstract
Aging is a complex biological process characterized by progressive loss of cellular homeostasis, impaired regenerative capacity, and accumulation of senescent cells that collectively predispose tissues to disease. Traditional two-dimensional culture systems and animal models have provided valuable insights but fail to fully recapitulate [...] Read more.
Aging is a complex biological process characterized by progressive loss of cellular homeostasis, impaired regenerative capacity, and accumulation of senescent cells that collectively predispose tissues to disease. Traditional two-dimensional culture systems and animal models have provided valuable insights but fail to fully recapitulate the spatial organization, cellular heterogeneity, and microenvironmental cues of aging human tissues. Organoid technology—three-dimensional self-organizing structures derived from adult stem cells or pluripotent stem cells has emerged as a transformative platform to model aging in vitro. These mini-tissues retain the architecture, signaling dynamics, and lineage hierarchy of native organs, making them powerful systems to interrogate age-associated cellular phenotypes, DNA damage responses, and senescence programs. This review discusses how organoid models are advancing our understanding of aging biology across multiple organ systems, from the intestines and liver to the brain and lung. We highlighted key molecular pathways driving cellular senescence within organoids—including p16INK4a/p21CIP1 signaling, SASP activation, mitochondrial dysfunction, and epigenetic drift—and how these can be targeted to restore tissue homeostasis. We further discussed how organoids derived from aged tissues, induced pluripotent stem cells, and engineered oncogene systems reveal new therapeutic opportunities to modulate senescence in age-related disorders, cancer, and regenerative medicine. Finally, we discussed emerging integrative tools such as organoid co-cultures, single-cell omics, and senolytics drug screening that are expanding the potential of organoids as translational platforms for anti-aging and disease intervention. Full article
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23 pages, 516 KB  
Article
Air Pollution Exposure and Gut Microbiota-Related Biomarkers in Healthy School-Age Children: A Biomonitoring Study
by Simone Filardo, Arianna Antonucci, Matteo Albano, Giulia Chicarella, Matteo Vitali, Rosa Sessa, Carmela Protano and Marisa Di Pietro
Atmosphere 2026, 17(4), 368; https://doi.org/10.3390/atmos17040368 - 2 Apr 2026
Viewed by 381
Abstract
The aim of the study was to investigate the relationship between air pollution exposure and gut microbiota-related biomarkers among a cohort of healthy school-age children. A cross-sectional biomonitoring study was conducted among 11-year-old healthy children living in central Italy. Selected urinary (u) volatile [...] Read more.
The aim of the study was to investigate the relationship between air pollution exposure and gut microbiota-related biomarkers among a cohort of healthy school-age children. A cross-sectional biomonitoring study was conducted among 11-year-old healthy children living in central Italy. Selected urinary (u) volatile organic compounds (VOCs) (benzene, toluene, ethylbenzene, xylenes, methyl tertbutyl ether, ethyl tert-butyl ether, 2-methyl-2-butyl methyl ether, and diisopropyl ether) were measured as exposure biomarkers while u-indican and faecal (f) zonulin were assessed as indicators of gut dysbiosis and intestinal permeability, respectively. Socio-demographic and lifestyle data were collected through questionnaires. u-VOCs showed higher geometric means among children exposed to environmental tobacco smoke, living in urban areas, and those spending a longer time in motor vehicles. u-Ethylbenzene and u-toluene were the most abundant compounds (mean ± SD: 307 ± 118 ng/L and 188 ± 94 ng/L, respectively). Mean f-zonulin and mean u-indican were, respectively, 49.09 ± 18.41 ng/mL and 5.97 ± 3.50 mg/dL. A statistically significant positive correlation was observed between u-ethylbenzene and u-indican (p = 0.02) and between u-toluene and f-zonulin (p = 0.05). These findings provide preliminary evidence that air pollution may influence gut microbial metabolic activity and intestinal barrier regulation in children, supporting the need for larger longitudinal studies. Full article
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15 pages, 621 KB  
Article
Lonicera japonica Flos as a Natural Anticoccidial Agent Against Eimeria tenella: In Vivo Efficacy and Compositional Insights
by Hsyang-Hsun Chung, Ming-Chu Cheng, Ya-Mei Chen, Kuo-Ping Shen, Yi-Yang Lien, Shyang-Chwen Sheu, Meng-Shiou Lee, Suttitas Tongkamsai, Hung Su and Yi-Lun Tsai
Poultry 2026, 5(2), 28; https://doi.org/10.3390/poultry5020028 - 1 Apr 2026
Viewed by 208
Abstract
This study aimed to evaluate the potential of Lonicera japonica Flos (LJF) as an alternative agent against Eimeria tenella (E. tenella) in chickens and to conduct phytochemical analysis to obtain compositional insights. Seventy-two one-day-old chickens were allocated to six groups and [...] Read more.
This study aimed to evaluate the potential of Lonicera japonica Flos (LJF) as an alternative agent against Eimeria tenella (E. tenella) in chickens and to conduct phytochemical analysis to obtain compositional insights. Seventy-two one-day-old chickens were allocated to six groups and fed diets supplemented with LJF powder (LJFp) at three concentrations (LJFp-L, LJFp-M, and LJFp-H) or maduramicin (MDM) or two non-supplemented control diets, namely, an infected unmedicated control (IUC) and an uninfected unmedicated control (UUC). Dietary treatments were initiated at chick arrival (Day 0) and continued for 28 days. At 21 days of age, all groups except the UUC group were orally challenged with a field isolate of E. tenella (PT-Te003; 2.0 × 104 oocysts/bird). Anticoccidial efficacy was assessed using the lesion score (LS), oocysts per gram of feces (OPG), relative body weight gain (rBWG), and anticoccidial index (ACI). The results demonstrated that all LJFp treatment groups had significantly reduced cecal OPG and LS (all LJFp treatments: p < 0.05 vs. IUC), indicating the effective suppression of E. tenella replication and intestinal damage. Regarding growth performance, the rBWG values of the LJFp-L and LJFp-M groups were the highest and comparable to those of the UUC group, showing no significant differences. In contrast, the LJFp-H and MDM groups exhibited significantly lower values (p < 0.05). Based on ACI evaluation, all LJFp-treated groups exhibited moderate to partial efficacy (LJFp-L > LJFp-M > LJFp-H), while MDM showed limited effectiveness. A gas chromatography–mass spectrometry (GC-MS) analysis of the LJFp ethanol extract revealed 15 essential oils, 10 organic acids, and three other compound classes, several of which have been associated with anticoccidial activity. Overall, the in vivo results suggest that LJF may exert potential anticoccidial effects against a field isolate of E. tenella. Phytochemical analysis provided preliminary compositional insights, and further studies are warranted to optimize extraction methods and evaluate efficacy at lower concentrations under additional in vitro and in vivo conditions. However, the current evidence remains insufficient to determine whether the field isolate exhibits reduced sensitivity to commercially available anticoccidial drugs, and additional studies are needed to clarify this issue. Full article
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11 pages, 652 KB  
Article
Soluble CD14 Levels Predict Liver Fibrosis in Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD) Independently of Obesity and Type 2 Diabetes
by Ilaria Barchetta, Flavia Agata Cimini, Federica Sentinelli, Sara Dule, Valentina Frattina, Giulia Passarella, Maria Neve Hirsch, Alessandro Oldani, Marco Giorgio Baroni and Maria Gisella Cavallo
Int. J. Mol. Sci. 2026, 27(7), 3050; https://doi.org/10.3390/ijms27073050 - 27 Mar 2026
Viewed by 289
Abstract
Increased intestinal permeability has been implicated in metabolic dysfunction-associated steatotic liver disease (MASLD), but its relationship with liver fibrosis independent of metabolic risk factors remains unclear. The aim of this study was to investigate the relationship between markers of gut-derived immune activation and [...] Read more.
Increased intestinal permeability has been implicated in metabolic dysfunction-associated steatotic liver disease (MASLD), but its relationship with liver fibrosis independent of metabolic risk factors remains unclear. The aim of this study was to investigate the relationship between markers of gut-derived immune activation and liver fibrosis in individuals with metabolic disease. We enrolled 139 adults (48.8 ± 11 years; BMI 33.7 ± 9.5 kg/m2; 50% type 2 diabetes); liver steatosis and fibrosis were estimated using the Hepatic Steatosis Index (HSI) and Fibrotic NASH Index (FNI); liver biopsies were available in a bariatric subgroup. Plasma soluble CD14 (sCD14) and lipopolysaccharide-binding protein (LBP) levels were measured by ELISA kits, and the LBP/sCD14 ratio was calculated. MASLD was present in 78% of participants; in these individuals, sCD14 levels correlated with HSI and FNI (both p < 0.01). In multivariable analysis adjusting for age, sex, BMI, waist circumference, and type 2 diabetes, sCD14 was independently associated with advanced fibrosis (OR: 3.16, 95% CI 1.32–7.55; p = 0.010). This association was confirmed by histology (p = 0.02). Overall, these findings point to a link between gut-derived immune activation and fibrotic burden in MASLD and provide insight into the pathophysiological relevance of the gut–liver axis in metabolic disease. Full article
(This article belongs to the Special Issue Molecular Insights into Chronic Liver Disease and Liver Failure)
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15 pages, 705 KB  
Article
Effects of Weizmannia faecalis DSM 32016 and Bacillus licheniformis DSM 33806–Based Probiotics on Performance, Carcass Traits, and Intestinal Health of Broilers
by Vassilios Dotas, Panagiotis Sakkas, Ilias Giannenas, Despoina Karatosidi, Lydia Zeibich, Alexandra Schlagheck, Dimitrios Verros, Nikolaos Lykos, Dimitrios Koutsianos, Marina Gaitanidou, Georgios Theodorou, Eleni Dalaka and George K. Symeon
Animals 2026, 16(7), 1010; https://doi.org/10.3390/ani16071010 - 25 Mar 2026
Viewed by 399
Abstract
Probiotics have emerged as an important strategy to achieve improved feed efficiency and carcass quality. To evaluate the effects of a probiotic combination based on Weizmannia faecalis (formerly Bacillus coagulans) and Bacillus licheniformis on broiler performance, carcass, and intestinal health, a study [...] Read more.
Probiotics have emerged as an important strategy to achieve improved feed efficiency and carcass quality. To evaluate the effects of a probiotic combination based on Weizmannia faecalis (formerly Bacillus coagulans) and Bacillus licheniformis on broiler performance, carcass, and intestinal health, a study was conducted. As-hatched ROSS 308 broilers were purchased from a local hatchery at day 0 and were randomly allocated to two treatments (160 birds per treatment; 8 replicates of 20 birds each): the control, which was fed a standard commercial diet throughout the experiment, and the probiotics group, where the standard diet was further supplemented with the probiotic combination. Feed and water were offered for ad libitum consumption while the feeding schedule was as follows: Starter, 1–10 days, mash; Grower, 11–24 days, mash; Finisher, 25–42, mash. The birds were challenged using re-used litter as bedding and the application of increased stocking density and mild heat stress. The final body weight of the probiotics’ supplemented group was higher than the control at 42 days of age (2822.7 g vs. 2575.4 g, respectively) (p < 0.05), and the overall feed conversion ratio was significantly reduced. The weight of all the commercial parts increased, along with the thigh and drumstick yield, thus indicating an improvement of carcass composition (p < 0.05). The European Poultry Efficiency Factor significantly improved following the probiotic dietary supplementation (409.7 vs. 344.9 of the control), while the probiotic fed birds had higher antibody titers for Bursal disease at 42 days and lower serum concentration of fatty acid binding protein 2 at 24 days (p < 0.05). Overall, the dietary supplementation of broilers with the probiotic mixture, under challenging rearing conditions, enhanced growth performance and improved carcass composition. Full article
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14 pages, 885 KB  
Article
Autoimmune Gastritis and Gastric Cancer Risk: Endoscopic and Histopathological Outcomes
by Laura Moreu, Irina Luzko, Joan Llach and Leticia Moreira
J. Clin. Med. 2026, 15(7), 2486; https://doi.org/10.3390/jcm15072486 - 24 Mar 2026
Viewed by 343
Abstract
Background and Aims: Autoimmune gastritis (AIG) is a chronic immune-mediated condition characterized by corpus-predominant atrophy, which can lead to vitamin B12 deficiency, achlorhydria, and an increased risk of gastric adenocarcinoma (GC) and neuroendocrine tumours. Diagnosis is often challenging due to a long asymptomatic [...] Read more.
Background and Aims: Autoimmune gastritis (AIG) is a chronic immune-mediated condition characterized by corpus-predominant atrophy, which can lead to vitamin B12 deficiency, achlorhydria, and an increased risk of gastric adenocarcinoma (GC) and neuroendocrine tumours. Diagnosis is often challenging due to a long asymptomatic phase and variable clinical presentation. This study aimed to assess the prevalence of gastric cancer and advanced premalignant lesions and to identify risk factors associated with a worse endoscopic outcome. Methods: This retrospective observational study involving AIG patients undergoing endoscopic surveillance (2006–2024) at the Hospital Clínic de Barcelona. Patients with AIG were identified based on the presence of anti-parietal cell antibodies and/or intrinsic factor antibodies and underwent endoscopic surveillance with histological assessment. Clinical, serological, endoscopic, and histological data were evaluated to estimate the prevalence of gastric lesions. Potential risk factors were evaluated using logistic regression. Results: A total of 70 patients met the inclusion criteria (median age 60 years; 60% female). Advanced premalignant findings (high- and low-grade dysplasia) were identified in 15.7% of the patients, while GC was found in 5.7%. Atrophy and intestinal metaplasia were present in 98.6% and 74.3% of patients, respectively. Female sex was independently associated with a lower risk of advanced neoplastic findings (OR = 0.24; 95% CI: 0.06–0.95; p = 0.044), whereas older age at diagnosis was associated with an increased risk (OR = 1.06; 95% CI: 1.00–1.11; p = 0.031). Conclusions: Given the high prevalence of premalignant lesions in AIG, endoscopic surveillance appears essential for early detection. The observed associations with female sex and older age, toward lower and higher probabilities of advanced neoplastic findings, respectively, may contribute to future risk stratification models. However, the limited identification of significant predictors underlines the complexity of AIG progression and supports the development of individualized follow-up protocols. Full article
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18 pages, 1743 KB  
Article
Gut Microbiota Changes Following Short-Term Probiotic Supplementation in Older Home Enteral Nutrition Patients
by Niki Tombolesi, Emanuele Francini, Giulia Matacchione, Debora Sparvoli, Nikolina Jukic Peladic, Maurizio Cardelli, Rina Recchioni, Matilde Sbriscia, Sonia Fantone, Chiara Giordani, Angelica Giuliani, Stefania Silvi, Dennis Fiorini, Sabrina Donati Zeppa, Antonio Domenico Procopio, Fabiola Olivieri, Fabrizia Lattanzio, Maria Capalbo, Paolo Orlandoni and Francesca Marchegiani
Nutrients 2026, 18(6), 1013; https://doi.org/10.3390/nu18061013 - 23 Mar 2026
Viewed by 484
Abstract
Background: Home Enteral Nutrition (HEN) patients, often older adults, are susceptible to gut microbiota dysbiosis and low-grade chronic inflammation (inflammaging), which negatively impacts overall health and intestinal integrity. However, evidence on microbiota-targeted interventions in this population remains limited. The development of targeted nutritional [...] Read more.
Background: Home Enteral Nutrition (HEN) patients, often older adults, are susceptible to gut microbiota dysbiosis and low-grade chronic inflammation (inflammaging), which negatively impacts overall health and intestinal integrity. However, evidence on microbiota-targeted interventions in this population remains limited. The development of targeted nutritional strategies, such as probiotic supplementation, has been proposed to address these age-related changes. Methods: This exploratory randomized, open-label study explored changes in gut microbiota composition following a 30-day probiotic intervention in a cohort of sixteen older HEN patients. Gut microbiota profiles were analyzed at baseline and post-intervention using 16S rRNA gene amplicon sequencing. Results: Significant shifts in the gut microbiota were observed, including a statistically significant increase in alpha diversity after 30 days. At the taxonomic level, the treated group showed an increased relative abundance of Lachnospiraceae and Erysipelotrichaceae, suggesting a modulation of gut microbiota structure following probiotic supplementation. Conclusions: These findings provide preliminary insights into microbiota dynamics in this population and may inform the design of future studies integrating functional and clinical outcomes. Full article
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14 pages, 589 KB  
Article
Comparative Growth Performance and Intestinal Morphological Development Between Liangshan Yanying Chicken and Arbor Acres Chicken During the Brooding Stage
by Ziheng Sun, Tao Li, Chao Chen, Chengpeng Wu, Ruyun Zhuo, Dan Wang, Qianwen Deng, Chaoyun Yang, Jing Wang, Heng Yang and Zengwen Huang
Animals 2026, 16(6), 991; https://doi.org/10.3390/ani16060991 - 22 Mar 2026
Viewed by 252
Abstract
The differences in growth performance and intestinal morphology between Liangshan Yanying Chicken (YYJ) and Arbor Acres (AA) broilers during the brooding stage, and to explore the effect of early intestinal development on growth. A total of 120 one-day-old male chicks of each breed [...] Read more.
The differences in growth performance and intestinal morphology between Liangshan Yanying Chicken (YYJ) and Arbor Acres (AA) broilers during the brooding stage, and to explore the effect of early intestinal development on growth. A total of 120 one-day-old male chicks of each breed were selected and randomly divided into three groups, reared under the same conditions for 28 days to measure body weight, feed intake, and intestinal morphological indices. The results showed that the body weight of AA broilers at 28 days of age was 3.24 times that of YYJ; the average daily gain and average daily feed intake from 1 to 28 days of age were 3.11 and 2.36 times those of YYJ, respectively, while the feed conversion ratio decreased by 24.10% (p < 0.01). Regarding intestinal morphology, the density of each intestinal segment in AA broilers remained significantly higher than that in YYJ. At 1 day of age, the villus height of the duodenum and ileum was 14.44% and 39.20% higher, respectively (p < 0.05 or p < 0.01), and the villus-to-crypt ratio in most intestinal segments at various ages was 78.27% to 91.05% higher (p < 0.01). Correlation analysis indicated that body weight at 14 and 28 days of age was significantly positively correlated with the average daily gain of each stage (p < 0.01), and significantly negatively correlated with the feed conversion ratio (p < 0.01). These findings indicate that the difference in early intestinal morphological development may constitute a key factor contributing to the growth limitation of local chicken breeds. This study provides a theoretical basis for the genetic improvement and nutritional regulation of YYJ. Full article
(This article belongs to the Section Poultry)
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24 pages, 21394 KB  
Article
Intestinal Development in Wuzhishan Pigs at Different Growth Phases: Insights from Microbiome and Metabolomics
by Jing Fan, Xinyu Xue, Haojie Zhang, Feng Wang, Zhe Chao, Limin Wei, Hailong Liu, Yuwei Ren and Ruiping Sun
Animals 2026, 16(6), 976; https://doi.org/10.3390/ani16060976 - 20 Mar 2026
Viewed by 246
Abstract
Wuzhishan pigs are a typical Chinese indigenous miniature pig breed, with thin skin and high amino acid content in muscle; slow weight gain and long feeding phases limit their value. As the primary digestive and absorptive organ, the intestine is crucial for growth, [...] Read more.
Wuzhishan pigs are a typical Chinese indigenous miniature pig breed, with thin skin and high amino acid content in muscle; slow weight gain and long feeding phases limit their value. As the primary digestive and absorptive organ, the intestine is crucial for growth, yet current studies on its development are limited. This study aimed to investigate intestinal physiological differences in Wuzhishan pigs across four phases (pre-weaning: 7, 14 days; weaning: 35, 38, 45 days; fattening: 70, 100 days; maturity: 180, 240 days) by evaluating intestinal morphology, digestive enzyme activity, gut microbiota diversity via 16S rRNA gene sequencing, and metabolite characteristics via metabolomic analysis. Results showed poor intestinal morphology and enzyme activity during weaning, significant ileal and colonic microbial diversity differences across phases, increased beneficial bacteria with age, and enriched opportunistic pathogens (Streptococcus, Romboutsia, Terrisporobacter) during weaning; weaning also had lower lipid metabolites, correlated with decreased Fusobacterium, Lactobacillus, and Muribaculaceae. Fattening enhanced amino acid metabolism, with increased Lactobacillus correlated with higher amino acids and muscle-related metabolites, while maturity increased immune-related metabolites (e.g., pyridoxine) in the vitamin B6 pathway. These results explain delayed rapid weight gain in Wuzhishan pigs and provide a theoretical basis for maintaining intestinal stability and production performance. Full article
(This article belongs to the Section Pigs)
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18 pages, 976 KB  
Article
Influence of Genotype on Growth Performance, Carcass Traits and Meat Quality: A Comparative Study in Male Alpine and Saanen Kids
by Harun Kutay, Murat Durmuş, İslim Polat Açık and Ugur Serbester
Animals 2026, 16(6), 969; https://doi.org/10.3390/ani16060969 - 20 Mar 2026
Viewed by 239
Abstract
This study evaluated the growth performance, carcass characteristics, and meat quality of male Alpine and Saanen goat kids raised under standardized fattening conditions to inform breed-specific strategies for meat production. The study included 36 single-born male kids (18 Alpine and 18 Saanen purebreds) [...] Read more.
This study evaluated the growth performance, carcass characteristics, and meat quality of male Alpine and Saanen goat kids raised under standardized fattening conditions to inform breed-specific strategies for meat production. The study included 36 single-born male kids (18 Alpine and 18 Saanen purebreds) of similar age and live weight. The animals were allocated by breed and randomly assigned to three replicates per breed, with six animals in each replicate. After a two-week adaptation period, the kids were fattened for 12 weeks on an 80:20 concentrate–roughage diet. At the end of the fattening period, all animals were slaughtered, and physical, sensory, and chemical analyses of the meat were performed on the Longissimus lumborum (LL) muscle. Final live weights did not differ significantly between Alpine and Saanen kids, nor did average daily gains. However, the feed conversion ratio favored the Saanen breed, indicating superior feed efficiency. Alpine kids had significantly higher internal fat content, while Saanen kids had a higher proportion of full intestines. Meat pH, color, and texture were similar between breeds. Fatty acid analysis showed that Alpine meat had higher palmitic and palmitoleic acid content, whereas Saanen meat contained more calcium and sodium. These results suggest that both breeds are suitable for high-quality meat production under controlled feeding conditions, but breed-specific differences in fat composition and mineral content may affect nutritional value and market positioning. These findings are valuable for optimizing selection and marketing strategies in goat meat production systems targeting diverse consumer demands. Full article
(This article belongs to the Section Animal Products)
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26 pages, 2790 KB  
Article
Weaning Influences Epithelial Morphology, Gene Expression and Gut Microbiota Composition in Piglets
by Christina Mouchtoglou, Evy Goossens, Marijke Aluwe, Richard Ducatelle and Filip Van Immerseel
Animals 2026, 16(6), 961; https://doi.org/10.3390/ani16060961 - 19 Mar 2026
Viewed by 386
Abstract
Weaning introduces a variety of health-related challenges in piglets, but the relative contributions of the weaning event itself versus biological age at weaning remain unclear. During this period, the gastrointestinal tract has not yet fully developed, adding to the obstacles faced by piglets [...] Read more.
Weaning introduces a variety of health-related challenges in piglets, but the relative contributions of the weaning event itself versus biological age at weaning remain unclear. During this period, the gastrointestinal tract has not yet fully developed, adding to the obstacles faced by piglets during this transitory phase in their life, which includes stress from a switch in diet and environment, in addition to potential exposure to pathogens. We investigated the intestinal morphology, expression of genes related to intestinal function and inflammation, and the gut microbiota in 40 piglets weaned at either 3 or 5 weeks of age through complementary analyses: age-matched comparisons (22, 25, 32, 36, and 39 days old) assessed developmental trajectories, while days post-weaning (DPW) comparisons (1 and 4 days post-weaning) isolated acute weaning responses independent of biological age. Animals weaned at 3 weeks of age were divided into five pens of four piglets, while the other group remained with the sow until weaning. At each timepoint, we measured the small intestine length, villus length, crypt depth and mucosal CD3+ T-cell infiltration in mid-jejunal tissue. The gene expression of inflammatory markers, tight junction proteins and functional markers was quantified from duodenal and mid-jejunal tissue. The colonic microbiota composition was characterized by 16S rRNA gene sequencing. Both weaning groups showed similar acute morphological responses. However, adaptive gene expression patterns differed significantly. The DPW analysis revealed compensatory mechanisms: at DPW4, the early-weaned piglets exhibited 4-fold higher duodenal IAP than the late-weaned piglets (p < 0.001), while the late-weaned piglets maintained higher antimicrobial defenses (IL-8, p = 0.031; lysozyme, p = 0.027). Additionally, microbiota analysis revealed distinct succession patterns between the two groups. These findings demonstrate that acute physiological responses to weaning are age-independent, but biological maturity fundamentally shapes adaptive mechanisms and recovery trajectories. Early weaning requires compensatory physiological adjustments, while late weaning confers resilience through more stable microbiota and sustained innate defenses. Full article
(This article belongs to the Section Pigs)
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26 pages, 1353 KB  
Review
Processed Diets and Food Additives Shape the Gut Microbiota and Chronic Disease Risk Across the Life Course—A Three-Layer Ecosystem Disruption Model (TLED) Model
by Monica Manciulea (Profir), Luciana Alexandra Pavelescu, Gabriel Florin Răzvan Mogoş, Alin Constantin Stancu, Sanda Maria Cretoiu and Ileana Marinescu
Life 2026, 16(3), 505; https://doi.org/10.3390/life16030505 - 19 Mar 2026
Viewed by 392
Abstract
Ultra-processed foods (UPFs) represent a distinct dietary paradigm characterized by structurally simplified food matrices and chronic exposure to multiple additives, including emulsifiers, artificial sweeteners, and preservatives. Rather than acting in isolation, these compounds operate within a multi-additive environment that reshapes the gut ecosystem [...] Read more.
Ultra-processed foods (UPFs) represent a distinct dietary paradigm characterized by structurally simplified food matrices and chronic exposure to multiple additives, including emulsifiers, artificial sweeteners, and preservatives. Rather than acting in isolation, these compounds operate within a multi-additive environment that reshapes the gut ecosystem through convergent mechanisms. Emerging evidence suggests that additive-rich ultra-processed dietary environments may disrupt the gut ecosystem through three interconnected layers: (1) structural impairment of the intestinal barrier, including mucus erosion and tight-junction destabilization; (2) microbial metabolic shifts marked by short-chain fatty acid depletion, altered bile acid signaling, and enrichment of lipopolysaccharide-producing taxa; and (3) immune and inflammatory reprogramming promoting low-grade systemic inflammation. These processes collectively reduce ecosystem resilience—the capacity of the gut microbiota to resist and recover from perturbation. Vulnerability to additive-driven dysbiosis varies across the life course. During infancy, incomplete ecosystem stabilization may increase susceptibility to long-term ecological imprinting, whereas in older age, reduced microbial diversity and immune remodeling may impair recovery capacity following dietary stressors. In contrast, fiber-rich, minimally processed dietary patterns appear to enhance microbial resilience by reinforcing functional redundancy, metabolic buffering, and barrier integrity. Although much mechanistic evidence has been derived from experimental models, accumulating human data support the biological plausibility of additive-associated microbiota alterations. By integrating multi-additive exposure, ecosystem disruption, life-course modulation, and resilience within a unified framework, this review provides a mechanistically coherent model linking ultra-processed dietary environments to microbiota-mediated chronic disease risk. Here, we formalize this integrative perspective as the Three-Layer Ecosystem Disruption (TLED) Model. Full article
(This article belongs to the Special Issue The Emerging Role of Microbiota in Health and Diseases)
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