Search Results (66)

To combat poultry meat adulteration, we developed a poultry universal primer-based fluorescent PCR (PUP-fPCR). Through comprehensive genomic alignment analysis, a poultry-specific nuclear DNA sequence containing phylogenetically conserved regions and hypervariable segments with interspecies nucleotide polymorphisms was employed to develop universal primers targeting conserved flanking sequences and TaqMan probes for hypervariable segments. Then, a multiplex quantitative PCR method incorporating universal primers with four TaqMan probes was developed with high specificity and sensitivity (limit of detection: 0.005 ng). Analytical performance evaluation using prepared DNA mixtures revealed robust accuracy (relative deviation: 0.80–5.05%) and precision (relative standard deviation: 0.94–13.84%). This single-tube multiplex system leverages the spectral discrimination of TaqMan probes to simultaneously detect four poultry species, overcoming primer competition issues inherent in conventional multiplex PCR designs. This integrated approach reduces system complexity while maintaining detection efficiency, providing regulatory agencies with a robust tool for combating meat adulteration and ensuring food quality supervision. Full article

Quorum sensing (QS) represents a promising target for anti-virulence therapy; however, effective pharmacological intervention requires a detailed understanding of regulatory network architecture and environmental context. In Klebsiella pneumoniae, the orphan LuxR-type receptor SdiA lacks a cognate LuxI synthase and instead detects exogenous acyl-homoserine lactones (AHLs), positioning it as an inter-species signal integrator. Here, we demonstrate that SdiA functions as a context-dependent regulator whose impact on biofilm formation and virulence gene expression is gated by environmental AHL availability. Using isogenic ΔluxS, ΔsdiA, and ΔluxSΔsdiA mutants in a clinical bloodstream isolate, we show that under AHL-limited conditions, SdiA promotes baseline biofilm development, whereas in the presence of exogenous C6-HSL, it restrains excessive biofilm maturation. Two-way ANOVA confirmed significant genotype, treatment, and interaction effects, establishing that SdiA-mediated regulation is signal contingent. We further investigated the halogenated thiolactone meta-bromo-thiolactone (mBTL), previously described as a QS inhibitor in Pseudomonas aeruginosa. In K. pneumoniae, mBTL acts as a context-selective modulator rather than a simple inhibitor. Under AHL-limited conditions, mBTL phenocopied ΔsdiA, reducing biofilm formation and inducing overlapping transcriptional profiles. In contrast, under AHL-replete conditions, mBTL opposed SdiA-dependent gene expression, consistent with competitive antagonism of ligand-bound receptor. RNA-seq analysis revealed substantial concordance between ΔsdiA and WT + mBTL under AHL-free conditions, with the inversion of transcriptional directionality in the presence of C6-HSL. The findings redefine SdiA as a conditional quorum-sensing integrator and identify mBTL as a ligand-context-dependent modulator of LuxR-type signaling. Our results highlight the necessity of evaluating anti-virulence compounds across relevant signal environments and introduce receptor state-selective modulation as a strategic framework for targeting hybrid quorum-sensing systems in polymicrobial pathogens. Full article

Iron is an essential micronutrient for nearly all microorganisms, yet its bioavailability is severely limited in most environments. To overcome this restriction, microorganisms produce siderophores, high-affinity iron-chelating molecules that play pivotal roles in microbial iron homeostasis, interspecies competition, and host–pathogen interactions. Despite extensive research, current understanding of siderophore biosynthetic and regulatory diversity remains largely limited to specific models, with comprehensive cross-taxonomic frameworks only beginning to emerge. This review systematically integrates recent advances in the genetic and biochemical foundations of microbial siderophore production, focusing on the two major biosynthetic pathways: nonribosomal peptide synthetase (NRPS)-dependent and NRPS-independent synthetase (NIS). We further elaborate on the diverse transport systems in Gram-negative and Gram-positive bacteria, as well as fungi, alongside the iron-responsive regulators (e.g., Fur) and gene clusters that coordinate iron uptake and utilization. Beyond physiological mechanisms, we discuss how these insights inform emerging applications of siderophores across multiple fields: in medicine, enabling “Trojan horse” antimicrobial strategies; in agriculture, enhancing plant iron uptake and serving as biocontrol agents; in environmental remediation, facilitating heavy-metal detoxification; and in biosensing, acting as selective probes for metals and pathogens. By bridging fundamental mechanisms with practical applications, this review aims to provide an integrative perspective for future exploration of microbial iron homeostasis and its biotechnological potential. Full article

Background: Chronic insomnia is associated with elevated cardiovascular disease risk, and current therapeutic options for this condition remain inadequate. Melatonin (MT) combined with cannabidiol (CBD) may exert synergistic effects on improving sleep; the underlying pharmacological drug–drug interactions (DDI) and interspecies differences in their combined actions remain unknown. Purpose: This study aimed to evaluate the pharmacokinetic characteristics of combined drug formulations by utilizing DDI-based approaches so as to underpin the efficacy and safety of the formulation. Methods: Overexpressing hPEPT1 in MDCK cells, multiple species liver microsomes, equilibrium dialysis, and a static DDI model were employed to assess CBD’s effects on MT’s cellular uptake, inhibitory effect, enzymatic phenotype, protein binding, and human AUC changes. Results: CBD significantly increased MT exposure in dogs but caused dose-dependent biphasic changes in rats. MT negligibly affected CBD PK. In vitro, CBD inhibited MT metabolism with species differences: potent competitive inhibition in dogs (IC₅₀ = 3.42 ± 1.30 μM), weaker inhibition in rats/humans (IC₅₀ = 13.54 ± 1.15/16.47 ± 4.23 μM). CBD also demonstrated mechanism-based inhibition (K_I = 25.63 μM, K_inact = 0.063 min⁻¹) against human CYP1A2-mediated MT metabolism. Acidic conditions revealed that CBD inhibited PEPT1-mediated MT uptake. CBD exhibits high and MT moderate protein binding. Static model predictions aligned with in vivo dog/rat data project a worst-case human MT AUC increase up to 12-fold. Conclusions: This study identifies the critical role of PEPT1 in MT absorption and elucidates the dual mechanisms of CBD; namely, absorption inhibition and metabolic delay in regulating MT pharmacokinetics, which exhibits interspecies differences. Full article

Biofilms are more than just structural microbial communities. They are dynamic chemical ecosystems that synthesize a range of extracellular compounds involved in functions that extend beyond biofilm architecture. From quorum-sensing molecules like acyl-homoserine lactones (AHLs) to short-chain fatty acids (SCFAs), phenazines, indoles, and reactive sulfur species (RSS), biofilm-derived metabolites can impact the physiology and behavior of microorganisms living in the same ecosystem, including other bacteria and protozoa. It has recently been demonstrated that such molecules may also modulate competition between microbes, promote cooperation, and impact motility, differentiation, or virulence of free-living and parasitic protozoa. This review aims to discuss biofilm compounds that mediate interspecies or interkingdom interactions and their involvement in regulating gut and environmental microbiomes functions, and host–pathogen relationships with special emphasis on protozoan activity and the infection outcome. This review will also address how this chemical dialog can be explored to identify new therapeutic interventions against microbial infections and parasitic diseases. Full article

The mechanisms of nutritional niche differentiation among sympatric Schizothoracinae fishes play an important role in their adaptive evolution and should be considered in conservation strategies. To date, there have been no reports about the role of different feeding strategies in nutritional niche differentiation among five Schizothoracinae species (Ptychobarbus leptosomus, PL; Gymnodiptychus pachycheilus, GP; Schizothorax kozlovi, SK; Schizopygopsis malacanthus, SM; and S. wangchiachii, SW). This study explored the role of feeding strategy differences in nutritional niche differentiation among sympatric Schizothoracinae fishes. We analyzed feeding/digestive organ morphology, diet composition, intestinal digestive enzyme activity, and microbial diversity in five species from the middle Yalong River. The results revealed dietary divergence: PL consumed small fish, invertebrates, and algae; GP/SK fed on invertebrates and algae; and SM/SW primarily ate algae. Additionally, α-amylase activity was lower in PL/GP/SK than in SM/SW (p < 0.05), while lipase activity was lower in SM/SW than in PL/GP/SK (p < 0.05), and PL exhibited the highest trypsin activity (p < 0.05). The intestinal microbial composition/diversity also varied: the PL group differed significantly from the GP + SK and SM + SW groups (p < 0.05), with Cetobacterium being dominant in the PL group and Clostridium being dominant in the other groups; the α diversity was highest in the SM + SW group and lowest in the PL group. PICRUSt2 predictions revealed significant differences in nutrient metabolism pathways between the PL group and the other groups (p < 0.05). Overall, the morphological differences in feeding/digestive organs and recent food intake may drive the dietary divergence, inducing adaptive changes in digestive enzymes and microbial diversity and ultimately promoting nutritional niche differentiation among sympatric Schizothoracinae species. Full article

Livestock interactions with wildlife have been a concern for managers historically. Invasive feral swine represent an additional management concern in the realm of resource competition as well as zoonotic disease spread between livestock and wildlife. Our study deployed game cameras on a ranch in the Rolling Plains of North Texas to obtain a better understanding of the possibility of interspecies interactions among cattle, feral swine, and white-tailed deer across spatial, temporal, and seasonal variables. Species’ use of bottomlands, shallow uplands, and deep uplands within the ranch were monitored continuously over the course of a year. Cattle and feral swine exhibited high diel activity overlap with the greatest overlap estimates occurring in bottomlands (Δ = 0.889) and wintertime (Δ = 0.875). Cattle and deer exhibited lower diel overlap (Δ = 0.596–0.836, depending on the season and vegetation type), which could be a sign of niche partitioning between the two ungulates. Image captures and overlap estimates suggest interactions between cattle and the other two species occur less frequently in shallow upland sites relative to the other vegetation types. Though image captures of the three species were 17–69% lower in summer relative to fall, indirect interactions may remain high due to competition for shared resources and greater reliance on watering sites. Results suggest that land managers should focus on bottomland sites for feral swine eradication efforts and as areas of increased contact among species. Results can be used to guide livestock and wildlife management and herd health decisions, which can improve ranch economic, environmental, and social sustainability. Full article

As economically important sympatric species in the Northwest Pacific, the Japanese sardine (Sardinops melanostictus) and Chub mackerel (Scomber japonicus) exhibit significant biological interactions. Understanding the impact of interspecies competition on their habitat dynamics can provide crucial insights for the sustainable development and management of these interconnected species resources. This study utilizes fisheries data of S. melanostictus and S. japonicus from the Northwest Pacific, collected from June to November between 2017 and 2020. We integrated various environmental parameters, including temperature at different depths (0, 50, 100, 150, and 200 m), eddy kinetic energy (EKE), sea surface height (SSH), chlorophyll-a concentration (Chl-a), and the oceanic Niño index (ONI), to construct interspecific competition species distribution model (icSDM) for both species. We validated these models by overlaying the predicted habitats with fisheries data from 2021 and performing cross-validation to assess the models’ reliability. Furthermore, we conducted correlation analyses of the habitats of these two species to evaluate the impact of interspecies relationships on their habitat dynamics. The results indicate that, compared to single-species habitat models, the interspecific competition species distribution model (icSDM) for these two species exhibit a significantly higher explanatory power, with R² values increasing by up to 0.29; interspecific competition significantly influences the habitat dynamics of S. melanostictus and S. japonicus, strengthening the correlation between their habitat changes. This relationship exhibits a positive correlation at specific stages, with the highest correlations observed in June, July, and October, at 0.81, 0.80, and 0.88, respectively; interspecific competition also demonstrates stage-specific differences in its impact on the habitat dynamics of S. melanostictus and S. japonicus, with the most pronounced differences occurring in August and November. Compared to S. melanostictus, interspecific competition is more beneficial for the expansion of the optimal habitat (HIS ≥ 0.6) for S. japonicus and, to some extent, inhibits the habitat expansion of S. melanostictus. The variation in migratory routes and predatory interactions (with larger individuals of S. japonicus preying on smaller individuals of S. melanostictus) likely constitutes the primary factors contributing to these observed differences. Full article

In subtropical regions of China, the expansion of Moso bamboo has become increasingly prominent, resulting in massive mortality of original trees in adjacent forest stands. Significant changes have also occurred in the population characteristics and spatial distribution patterns of these native tree species. This study aims to examine the impacts of Moso bamboo (Phyllostachys edulis) expansion on the successional dynamics of coniferous and broad-leaved mixed forests. Three sample plots were successively set up in the transition zone from bamboo to conifer and broad-leaved forest, including conifer and broad-leaved mixed forest (CF), transition forest (TF), and Moso bamboo forest (MF); a total of 72 10 m × 10 m quadrats (24 per forest type) were included. The species composition, diameter class structure and distribution pattern of living stems and snags (dead standing stems) were studied. The results showed that during the late expansion phase of bamboo, the density of living stems and snags separately increased by 2234 stems·ha⁻¹ and 433 stems·ha⁻¹, basal area increments of 23.45 m²·ha⁻¹ and 7.81 m²·ha⁻¹. The individuals with large diameter in living stems and snags gradually decreased, and the distribution range of the diameter steps mainly narrowed to 10–15 cm. On the scale of 0–10 m, the spatial pattern of standing stems changed from random and weak aggregation distribution to strong aggregation distribution and then to weak aggregation and random distribution in the three stands, while the overall distribution of snags in the three stands was random. The spatial correlation between living stems and snags evolved from uncorrelated in CF, to significant positive correlation in TF, and then to positive correlation and uncorrelation in MF. These results indicated that the bamboo expansion accelerated the mortality rate of the original tree species, leading to the diversity of tree species decreased, the composition of diameter classes was simplified, the degree of stem aggregation increased, and intra- and inter-species competition became the main reasons for tree death. Full article

Infections often occur in complex niches consisting of multiple bacteria. Despite the increasing awareness, there is a fundamental gap in understanding which interactions govern microbial community composition. Pseudomonas aeruginosa is frequently isolated from monomicrobial and polymicrobial human infections. This pathogen forms polymicrobial infections with other ESKAPEE pathogens and defies eradication by conventional therapies. By analyzing the competition within co-cultures of P. aeruginosa and representative secondary pathogens that commonly co-infect patients, we demonstrate the antagonism of P. aeruginosa against other ESKAPEE pathogens and the contribution of this pathogen’s multiple quorum-sensing (QS) systems in these interactions. QS is a highly conserved bacterial cell-to-cell communication mechanism that coordinates collective gene expressions at the population level, and it is also involved in P. aeruginosa virulence. Using a collection of P. aeruginosa QS mutants of the three major systems, LasR/LasI, MvfR/PqsABCDE, and RhlR/RhlI, and mutants of several QS-regulated functions, we reveal that MvfR and, to a lesser extent, LasR and RhlR, control competition between P. aeruginosa and other microbes, possibly through their positive impact on pyoverdine, pyochelin, and phenazine genes. We show that MvfR inhibition alters competitive interspecies interactions and preserves the coexistence of P. aeruginosa with the ESKAPEE pathogens tested while disarming the pathogens’ ability to form biofilm and adhere to lung epithelial cells. Our results highlight the role of MvfR inhibition in modulating microbial competitive interactions across multiple species, while simultaneously attenuating virulence traits. These findings reveal the complexity and importance of QS in interspecies interactions and underscore the impact of the anti-virulence approach in microbial ecology and its importance for treating polymicrobial infections. Full article

This study examined the factors influencing wild boar population density in Slovakia from 2013 to 2023, focusing on biometeorological, demographic, and ecological variables. Linear regression models were used to analyze spring population figures and the number of hunted animals across eight self-governing regions. Following the African swine fever outbreak in 2019, population dynamics changed significantly. The number of wild boars hunted increased while population densities decreased, particularly in the Presov, Kosice, and Banska Bystrica regions. Biometeorological factors, including monthly air temperature and precipitation, significantly influenced wild boar density at the national level, with soil temperature at a 5 cm depth playing a key role regionally. Demographic factors, such as road network and human population densities, also impacted wild boar populations, with road network density being the most important. Ecological factors, including the presence of brown hares, common pheasants, and grey wolves, had varying effects across regions. Grey wolf predation and interspecies competition were particularly significant in mountainous, less urbanized areas. The joint influence of biometeorological and demographic factors was higher in regions affected by African swine fever. This study highlights the complex interactions between environmental, demographic, and ecological factors and provides insights into more effective wildlife management strategies aimed at the sustainable management of wild boar populations. It advocates for a regionally tailored, integrated approach that considers the influence of biometeorological, demographic, and ecological factors, while also addressing the risks associated with epidemics, such as African swine fever. Full article

Staphylococcus aureus and Pseudomonas aeruginosa are classified as ESKAPE pathogens that present a significant challenge to treatment due to their increased resistance to a considerable number of antimicrobial agents. Background/Objective: Biofilms exacerbate treatment challenges by providing enhanced antimicrobial and environmental protection. Mixed-species biofilms further complicate treatment options through numerous complex interspecies interactions, leading to potentially severe adverse clinical outcomes. Methods: This study assessed the interaction between clinical S. aureus and P. aeruginosa isolates during biofilm formation using microplate biofilm formation assays, scanning electron microscopy, and confocal microscopy. Results: We identified a competitive relationship between P. aeruginosa and S. aureus, where both pathogens exhibited a reduction in biofilm formation during mixed-species biofilms compared with monocultures, although P. aeruginosa outcompeted S. aureus. Furthermore, we found that the cell-free conditioned media (CFCM) of P. aeruginosa significantly reduced the S. aureus biofilms. Using fractioned CFCM, we identified that the anti-staphylococcal activity of the >10 kDa fraction was almost identical to the non-fractioned CFCM. Our confocal microscopy results suggest that P. aeruginosa CFCM depolarize S. aureus membranes and reduces the biofilm burden. Conclusions: These findings contribute to our understanding of the mechanisms underlying the interactions between these pathogens, suggesting that there is an antagonistic relationship between S. aureus and P. aeruginosa in a biofilm setting. Full article

Establishing an optimum range of inter-species spacing that reduces competition among trees and mitigates the effects of drought is a critical yet complex challenge in forest management. Stand density plays a crucial role in forest functioning by regulating resource allocation within individual trees. Higher stand densities have been shown to reduce sap velocities, indicating intensified competition for water and other resources. However, determining the precise spacing that minimizes competition while maintaining ecosystem balance remains unclear. In this study, conducted in temperate Norway spruce forests at an altitude range of 400–500 m in the Czech Republic, we propose a novel technique to define tree spacing that reduces competitive interactions. We used xylem sap flow residuals of an ordinary least square (OLS) regression model to filter out the effects of elevation and diameter at breast height (DBH) on field-measured sap flow for 101 planted Norway spruce trees with a DBH range of 40 ± 5 cm (≈90–100 years old). The model residuals allowed us to account for the most important driver of sap flow variability: tree density and its underlying effects on individual tree traits. To minimize the confounding effects of temporal and spatial variability, we used twelve consecutive daily measurements of sap flow (6 a.m. to 6 p.m.) taken at the start of the growing season. By constructing an experimental variogram, we quantified sap flow variability as a function of tree spacing. The results showed a steady sap flow pattern at tree densities of 12, 11, and 10 trees per 314 m² (equivalent to 350 ± 32 trees per hectare), corresponding to inter-tree spacing measurements of 5.12 m, 5.34 m, and 5.60 m, respectively. These findings suggest that when the N number of trees (median) per unit area (A) is in equilibrium with resource availability, increasing or decreasing the n number of trees may not significantly change competition levels (A; f(A) = N ± n). The size or deviation of n depends on the area to define the minimum and maximum thresholds or tolerance capacity for the number of trees allowed to be in the area. This technique—using a variogram of sap flow residuals to determine tree spacing—can be periodically applied, such as every 10–15 years, and adapted for different elevation gradients (e.g., within 100 m intervals). It offers a practical tool for forest managers and policymakers, guiding thinning and planting strategies to enhance forest resilience in the face of water-stress conditions. Full article

Protein glutathionylation is defined as a reversible, ubiquitous post-translational modification, resulting in the formation of mixed disulfides between glutathione and proteins’ cysteine residues. Glutathionylation has been implicated in several cellular mechanisms ranging from protection from oxidative stress to the control of cellular homeostasis and the cell cycle. A significant body of research has examined the multifaceted effects of this post-translational modification under physiological conditions in eukaryotes, with a particular focus on its impact on the development of various diseases in humans. In contrast, the role of glutathionylation in prokaryotic organisms remains to be extensively investigated. However, there has been a recent increase in the number of studies investigating this issue, providing details about the role of glutathione and other related thiols as post-translational modifiers of selected bacterial proteins. It can be concluded that in addition to the classical role of such thiols in protecting against cysteine oxidation and consequent protein inactivation, many more specialized roles of glutathionylation in bacterial pathogenicity, virulence, interspecies competition and survival, and control of gene expression are emerging, and new ones may emerge in the future. In this short review, we aim to summarize the current state-of-the-art in this field of research. Full article

A novel time delay Lotka–Volterra (TDLV) model was developed by extending the concept of time delay from integer order to fractional order. The TDLV model was constructed to simulate the dynamics of aboveground biomass per individual of three dominant herbaceous plant species (Leymus chinensis, Agropyron cristatum, and Stipa grandis) in the typical grasslands of Inner Mongolia. Comparative analysis indicated that the TDLV model outperforms candidate models, such as Logistic, GM(1,1), GM(1,N), DGM(2,1), and Lotka–Volterra model, in terms of all fitting criteria. The results demonstrate that interspecies competition exhibits clear feedback and suppression effects, with Leymus chinensis playing a central role in regulating community dynamics. The system is locally stable and eventually converges to an equilibrium point, though Stipa grandis maintains relatively low biomass, requiring further monitoring. Time delays are prevalent in the system, influencing dynamic processes and causing damping oscillations as populations approach equilibrium. Full article