Search Results (13)

Extracting 3D skeletons from point clouds is a challenging task in computer vision. Most existing deep learning methods rely heavily on supervised data requiring extensive manual annotation. Consequently, re-labeling is often necessary for cross-category applications, while the process of 3D point cloud annotation is inherently time-consuming and expensive. Simultaneously, existing unsupervised methods often suffer from significant skeleton point deviations due to limited capabilities in modeling local structures. To address these limitations, we propose Graph-SENet, an unsupervised learning-based graph neural network method for skeleton extraction. This method integrates dynamic graph convolution with a multi-level feature fusion mechanism to more comprehensively capture local geometric relationships. Through a multi-dimensional unsupervised feature loss, it learns the structural representation of skeleton points, significantly improving the precision and stability of skeleton point localization under annotation-free conditions. Furthermore, we propose a graph autoencoder structure optimized by cosine similarity to predict topological connections between skeleton points, thereby recovering semantically consistent and structurally complete 3D skeleton representations in an end-to-end manner. Experimental results on multiple datasets, including ShapeNet, ITOP, and Soybean-MVS, demonstrate that Graph-SENet outperforms existing mainstream unsupervised methods in terms of Chamfer Distance and F1-score. It exhibits superior accuracy, robustness, and cross-category generalization capabilities, effectively reducing manual annotation costs while enhancing the completeness and semantic consistency of skeleton recovery. These results validate the application potential and practical value of Graph-SENet in 3D structure understanding and downstream 3D analysis tasks. Full article

Background/Objectives: Preventive oral health education plays a key role in preparing future healthcare professionals to promote and maintain good oral hygiene. Individually Trained Oral Prophylaxis (iTOP) is a structured, personalized educational program that emphasizes correct brushing techniques and interdental cleaning. This study aimed to evaluate the long-term effectiveness of a single-session iTOP intervention on clinical oral health outcomes among medical and dental students. Methods: A 2-year prospective cohort study included 82 first- and fourth-year medical and dental students at the University of Mostar, Bosnia and Herzegovina. The researchers randomly assigned participants to an iTOP intervention group or a control group. The primary analysis used multivariable linear mixed-effects models for repeated measures, adjusted for study program, academic year, smoking status, and baseline oral-hygiene habits, with effect sizes reported alongside 95% confidence intervals. Clinical periodontal parameters—plaque index, bleeding on probing, and probing depth—were assessed at baseline, three months, and two years. All participants received professional cleaning and oral hygiene kits. Only the intervention group received personalized iTOP training, consisting of a single session with brief reinforcement at the 3-month follow-up. This study was registered at ClinicalTrials.gov (NCT07085013). Results: Seventy-six students completed the follow-up. The iTOP group had significantly lower plaque index and bleeding scores at both follow-up points (p < 0.001) compared to the control group. Baseline differences were observed between subgroups (medical vs. dental; younger vs. older students), but these diminished over time. At the 2-year follow-up, only the plaque index remained significantly improved, while other clinical parameters returned to values comparable to baseline. Conclusions: The iTOP program resulted in significant short-term improvements in oral health among medical and dental students. For sustained long-term outcomes, iTOP or similar structured oral health education programs should be integrated into medical and dental curricula. Enhancing oral health awareness among healthcare providers may ultimately contribute to improved public oral health outcomes. Given the single-center design and the single-session nature of the intervention, the results should be interpreted with caution. Full article

Recently, significant effort has been devoted to enhancing magnetic anisotropy energy (MAE) and the Dzyaloshinskii–Moriya interaction (DMI) in two-dimensional (2D) ferromagnetic materials through various tuning approaches. Among these methods, defect engineering is one of the most effective strategies. However, the influence of these charged defects on the MAE and DMI is unclear. Therefore, we systematically investigate the defect effect on the MAE and DMI of I vacancy-doped (v_I-CrI₃), 3d-transition-metal-doped (TM = Ti, V, Cr, Mn, Fe, Co, Ni, Cu, and Zn) (3d-TM_i@CrI₃), and v_I-TM co-doped (3d-TM_i@v_I-CrI₃) monolayer CrI₃ using first-principles calculations. Our results indicate that Cr-rich conditions can promote the defect formation of v_I-CrI₃, 3d-TM_i@CrI₃, and 3d-TM_i@v_I-CrI₃ systems and demonstrate that 49 types of charged systems are stable. Among these systems, the Cu_i@v_I-CrI₃ in the +1 charge state (Cu_i^•@v_I-CrI₃) system has a smaller defect formation energy, exhibiting a large MAE exceeding 30 meV, and the ratio (D/J) of the antisymmetric magnetic exchange parameter (D) to the Heisenberg exchange parameter (J) reaches 1.04. The large MAE originates from the transition from single-ion anisotropy (SIA) to covalent interaction anisotropy (CIA) due to the coupling variation between the p_y and p_x orbitals of I atoms near the Fermi level caused by charge states. The enhancement of the DMI is due to the electrostatic potential differences between the I-top and I-bottom layers, which are conducive to forming stable chiral spin textures. This study provides insight into the defect charge state modulating the magnetism of 2D magnetic materials. Full article

Cerebral palsy poses challenges in walking, necessitating ankle foot orthoses (AFOs) for stability. Gait analysis, particularly on slopes, is crucial for effective AFO assessment. The study aimed to compare the performance of commercially available AFOs with a new sports-specific AFO in children with hemiplegic cerebral palsy and to assess the effects of varying slopes on gait. Eighteen participants, aged 6–11, with hemiplegia, underwent gait analysis using GRAIL technology. Two AFO types were tested on slopes (uphill +10 deg, downhill −5 deg, level-ground). Kinematic, kinetic, and spatiotemporal parameters were analyzed. The new AFO contributed to significant changes in ankle dorsi-plantar-flexion, foot progression, and trunk and hip rotation during downhill walking. Additionally, the new AFO had varied effects on spatiotemporal gait parameters, with an increased stride length during downhill walking. Slope variations significantly influenced the kinematics and kinetics. This study provides valuable insights into AFO effectiveness and the impact of slopes on gait in hemiplegic cerebral palsy. The findings underscore the need for personalized interventions, considering environmental factors, and enhancing clinical and research approaches for improving mobility in cerebral palsy. Full article

In T. gondii, as well as in other model organisms, gene knock-out using CRISPR-Cas9 is a suitable tool to identify the role of specific genes. The general consensus implies that only the gene of interest is affected by the knock-out. Is this really the case? In a previous study, we generated knock-out (KO) clones of TgRH88_077450 (SRS29B; SAG1) which differed in the numbers of the integrated dihydrofolate-reductase-thymidylate-synthase (MDHFR-TS) drug-selectable marker. Clones 18 and 33 had a single insertion of MDHFR-TS within SRS29B. Clone 6 was disrupted by the insertion of a short unrelated DNA-sequence, but the marker was integrated elsewhere. In clone 30, the marker was inserted into SRS29B, and several other MDHFR-TS copies were found in the genome. KO and wild-type (WT) tachyzoites had similar shapes, dimensions, and vitality. This prompted us to investigate the impact of genetic engineering on the overall proteome patterns of the four clones as compared to the respective WT. Comparative shotgun proteomics of the five strains was performed. Overall, 3236 proteins were identified. Principal component analysis of the proteomes revealed five distinct clusters corresponding to the five strains by both iTop3 and iLFQ algorithms. Detailed analysis of the differentially expressed proteins revealed that the target of the KO, srs29B, was lacking in all KO clones. In addition to this protein, 20 other proteins were differentially expressed between KO clones and WT or between different KO clones. The protein exhibiting the highest variation between the five strains was srs36D encoded by TgRH_016110. The deregulated expression of SRS36D was further validated by quantitative PCR. Moreover, the transcript levels of three other selected SRS genes, namely SRS36B, SRS46, and SRS57, exhibited significant differences between individual strains. These results indicate that knocking out a given gene may affect the expression of other genes. Therefore, care must be taken when specific phenotypes are regarded as a direct consequence of the KO of a given gene. Full article

Idiopathic toe walking (ITW) is a gait deviation characterized by forefoot contact with the ground, sometimes observed in children, that alters ankle kinematics, possibly leading to health-related issues. When studying foot and ankle gait deviations, the adoption of a single-segment foot model entails a significant simplification of foot and ankle movement, and thus may potentially mask some important foot dynamics. Differences in ankle kinematics between single- (conventional gait model, PiG, or Davis) and multi-segment (Oxford foot model, OFM) foot models were investigated in children with ITW. Fourteen participants were enrolled in the study and underwent instrumented gait analysis. Children were asked to walk barefoot and while wearing a foot orthosis that modified the ankle movement pattern toward a more physiological one without blocking foot intrinsic motion. ITW gait abnormalities, e.g., the absence of heel rocker and the presence of anticipated forefoot rocker, were found/not found according to the foot model. Walking conditions significantly interacted with the foot model effect. Finally, the different characterization of gait abnormalities led to a different classification of ITW, with a possible impact on the clinical evaluation. Due to its closer adhesion to ankle anatomy and to its sensitivity to ITW peculiarities, OFM may be preferable for instrumented gait analysis in this population. Full article

The movement of water flow usually has history and path dependence. Fractional calculus is very suitable for describing the process with memory and hereditary properties. In this study, the order of the differential equation in the Nash confluence system was extended from integer order to fractional order. On the basis of the Laplace transform, the fractional instantaneous unit hydrograph was obtained, which was used to describe the long-term memory of the basin confluence system. Furthermore, the enhanced TOPMODEL (FTOP) model was obtained by applying the fractional instantaneous unit hydrograph as the surface runoff calculation. Taking Chengcun Basin in China as an example, the FTOP model was used to simulate the daily runoff and 22 floods from 1989 to 1996. The simulation results were compared with two original TOPMODEL models (the NTOP and ITOP models). The results show that in the daily runoff simulation, the Nash–Sutcliffe efficiency (NSE), relative error (RE), and root mean square error (RMSE) of the FTOP model were 0.82, −11.14%, and 15.25 m³/s, respectively, being slightly better than the other two TOPMODEL models. According to the hydrologic frequency curve, the measured daily runoff was divided into different flow levels. It was found that the FTOP model can improve the simulation effect of the medium-flow (frequency between 10% and 50%) and low-flow (frequency more than 50%) sections to a certain extent. In the flood simulation, the average runoff depth relative error (RDRE), peak discharge relative error (PDRE), peak occurrence time error (POTE), and NSE of 22 floods were 1.99%, 14.06%, −1.27, and 0.88, respectively, indicating that the simulation effect had been improved. Especially in NSE, the improvement was more prominent, meaning that the FTOP model can better simulate the flooding process. However, the flood peak and runoff depth simulation effect were not significantly improved. These conclusions indicate that the confluence method using the fractional instantaneous unit hydrograph as the TOPMODEL model can improve the simulation effect. Full article

Idiopathic toe walking (ITW) is a gait deviation characterized by forefoot contact with the ground and excessive ankle plantarflexion over the entire gait cycle observed in otherwise-typical developing children. The clinical evaluation of ITW is usually performed using optoelectronic systems analyzing the sagittal component of ankle kinematics and kinetics. However, in standardized laboratory contexts, these children can adopt a typical walking pattern instead of a toe walk, thus hindering the laboratory-based clinical evaluation. With these premises, measuring gait in a more ecological environment may be crucial in this population. As a first step towards adopting wearable clinical protocols embedding magneto-inertial sensors and pressure insoles, this study analyzed the performance of three algorithms for gait events identification based on shank and/or foot sensors. Foot strike and foot off were estimated from gait measurements taken from children with ITW walking barefoot and while wearing a foot orthosis. Although no single algorithm stands out as best from all perspectives, preferable algorithms were devised for event identification, temporal parameters estimate and heel and forefoot rocker identification, depending on the barefoot/shoed condition. Errors more often led to an erroneous characterization of the heel rocker, especially in shoed condition. The ITW gait specificity may cause errors in the identification of the foot strike which, in turn, influences the characterization of the heel rocker and, therefore, of the pathologic ITW behavior. Full article

Running is an essential activity for children with cerebral palsy (CP). This study aims to characterize the locomotor pattern of running in hemiplegic children with new generation ankle foot orthosis (AFOs) conceived to foster intense motor activities such as running. A group of 18 children with spastic hemiplegia was recruited. A biomechanical multivariable comparison was made between barefoot and with AFO running trials. The focus was devoted to bilateral sagittal plane hip, knee, ankle kinematics and kinetics, and three-dimensional ground reaction forces. Wearing the orthoses, the children were found to reduce cadence and the duration of the stance phase as well as increase the step and stride length. The new AFO resulted in significant changes in kinematics of affected ankle both at initial contact 0–3% GC (p < 0.017) and during the entire swing phase 31–100%GC (p < 0.001) being the ankle more dorsiflexed with AFO compared to barefoot condition. Ankle power was found to differ significantly both in absorption and generation 5–10%GC (p < 0.001); 21–27%GC (p < 0.001) with a reduction in both cases when the AFO was worn. No statistical differences were recorded in the GRF components, in the affected ankle torque and hip and knee kinematics and kinetics. Full article

Background: The TOP2A and ERBB2 genes are co-amplified in about 40% of HER2 positive (HER2+) breast cancers. Oral etoposide (VP16), an inhibitor of topoisomerase-II (encoded by TOP2A), has demonstrated clinical activity in metastatic breast cancer (MBC). The benefit of oral VP16 combined with trastuzumab (VP16-T) in HER2+ MBC has not yet been evaluated. Methods: Patients treated at the Institut Curie Hospitals with VP16-T for HER2+ MBC were retrieved by an in silico search. Progression-free survival (PFS), overall survival (OS), response rate, prolonged PFS (defined as at least 6 months), clinical benefit, and toxicity were assessed. The co-amplification of ERBB2 and TOP2A was assessed by shallow whole genome sequencing on tumor tissue whenever available. Results: Forty-three patients received VP16-T after a median number of six prior treatment lines for HER2+ MBC. Median PFS and OS were 2.9 months (95% CI [2.4–4.7]) and 11.3 months (95% CI [8.3–25.0]), respectively. Three patients had a complete response, while 12/40 (30%) experienced clinical benefit. Only three patients stopped treatment for toxicity. Seven (35%) patients displayed a TOP2A/ERBB2 co-amplification. No statistically significant correlation was found between outcome and TOP2A/ERBB2 co-amplification. Conclusion: Our analysis suggests a favorable efficacy and toxicity profile for VP16-T in patients with heavily pretreated HER2+ MBC. Full article

Pancreatic ductal adenocarcinoma (PDAC) is one of the most aggressive types of cancer, and its prognosis is abysmal; only 25% of patients survive one year, and 5% live for five years. MicroRNA (miRNA) signature analysis of PDAC revealed that both strands of pre-miR-30c (miR-30c-5p, guide strand; miR-30c-2-3p, passenger strand) were significantly downregulated, suggesting they function as tumor-suppressors in PDAC cells. Ectopic expression assays demonstrated that these miRNAs attenuated the aggressiveness of PDAC cells, e.g., cell proliferation, migration, and invasiveness. Through a combination of in silico analyses and gene expression data, we identified 216 genes as putative oncogenic targets of miR-30c-5p and miR-30c-2-3p regulation in PDAC cells. Among these, the expression of 18 genes significantly predicted the 5-year survival rates of PDAC patients (p < 0.01). Importantly, the expression levels of 10 genes (YWHAZ, F3, TMOD3, NFE2L3, ENDOD1, ITGA3, RRAS, PRSS23, TOP2A, and LRRFIP1) were found to be independent prognostic factors for patient survival (p < 0.01). We focused on TOP2A (DNA Topoisomerase II Alpha) and investigated its potential as a therapeutic target for PDAC. The overexpression of TOP2A and its transcriptional activators (SP1 and HMGB2) was detected in PDAC clinical specimens. Moreover, the knockdown of TOP2A enhanced the sensitivity of PDAC cells to anticancer drugs. Our analyses of the PDAC miRNA signature and tumor-suppressive miRNAs provide important insights into the molecular pathogenesis of PDAC. Full article

Recent years have witnessed a remarkable growth in the way mathematics, informatics, and computer science can process data. In disciplines such as machine learning, pattern recognition, computer vision, computational neurology, molecular biology, information retrieval, etc., many new methods have been developed to cope with the ever increasing amount and complexity of the data. These new methods offer interesting possibilities for processing, classifying and interpreting eye-tracking data. The present paper exemplifies the application of topological arguments to improve the evaluation of eye-tracking data. The task of classifying raw eye-tracking data into saccades and fixations, with a single, simple as well as intuitive argument, described as coherence of spacetime, is discussed, and the hierarchical ordering of the fixations into dwells is shown. The method, namely identification by topological characteristics (ITop), is parameter-free and needs no pre-processing and post-processing of the raw data. The general and robust topological argument is easy to expand into complex settings of higher visual tasks, making it possible to identify visual strategies. Full article

This paper presents a new spaceborne synthetic aperture radar (SAR) burst mode named “Extended Terrain Observation by Progressive Scans (ETOPS)” for wide swath imaged coverage. This scheme extends the imaging performance of the conventional Terrain Observation by Progressive Scans (TOPS) mode with a very limited azimuth beam steering capability. Compared with the TOPS mode with the same azimuth beam steering range for the same swath width, a finer azimuth resolution could be obtained. With the same system parameters, examples of four burst SAR imaging modes named ScanSAR, TOPS, inverse TOPS (ITOPS) and ETOPS are given, and their corresponding system performances are analyzed and compared. Simulation results show that the proposed ETOPS mode could obtain a better high-resolution wide-swath imaging performance under the same conditions. Full article