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13 pages, 647 KB  
Article
Aging Regulates Receptivity by Modulating the Expression of Osteopontin and HOXA10 in the Human Endometrium
by Fanourios Makrygiannakis, Maria Marmara, Thomas Vrekoussis, Dragana Nikitovic, Antonios Makrigiannakis and Aikaterini Berdiaki
J. Clin. Med. 2026, 15(9), 3402; https://doi.org/10.3390/jcm15093402 - 29 Apr 2026
Abstract
Background/Objectives: Aging is increasingly recognized as a key determinant of changes in human tissue and cellular function. Women’s age, in particular, has been associated with reduced oocyte quality and negatively correlated with the expression of genes involved in endometrial decidualization and cellular [...] Read more.
Background/Objectives: Aging is increasingly recognized as a key determinant of changes in human tissue and cellular function. Women’s age, in particular, has been associated with reduced oocyte quality and negatively correlated with the expression of genes involved in endometrial decidualization and cellular function. The ability of endometrial cells to interact and allow the invasion of the growing embryo is defined as endometrial receptivity. Investigating age-related differences in human endometrial receptivity may expand our understanding of factors contributing to infertility. Methods: Stromal cells were isolated and cultured from endometrial pipelle biopsies (n = 28) obtained from female donors at the proliferative phase of the menstrual cycle. Protein and mRNA expression of the receptivity modulators OPN, CD44, and HOXA10 were analyzed by Western blot and real-time PCR, respectively. Results: Data presented a linear decrease in mRNA expression of OPN and HOXA10 (p = 0.0066, R2 = 0. and p = 0.0036, R2 = 0.529, respectively) with women’s increasing age, and a similar trend was evident at the protein level (OPN, p < 0,05; HOXA10, p < 0,01). Further analysis of the data included separating the samples into three age groups: 25–35 years, 36–40 years, and 41–46 years. ANOVA revealed a significant decrease in OPN and HOXA10 mRNA expression (p = 0.03158 and p = 0.02578, respectively). CD44 expression did not differ with age. Conclusions: OPN and HOXA10 are negatively correlated with increasing maternal age. These findings suggest that age-related alterations in key endometrial receptivity modulators may contribute to impaired implantation and could represent potential targets for diagnostic or therapeutic strategies in human implantation failure. Full article
(This article belongs to the Section Obstetrics & Gynecology)
22 pages, 19471 KB  
Article
MUC1 Protects Preimplantation Embryos In Vitro via Clearance of ROS by Triggering Mitophagy
by Jingping Yang, Danjun Li, Chihyu Yang, Huayun Deng, Kaibo Lin, Bing Liao, Xiaodong Liao, Yue Liu, Qifeng Lyu and Lei Huang
Cells 2026, 15(9), 806; https://doi.org/10.3390/cells15090806 - 29 Apr 2026
Abstract
Embryos being treated using assisted reproductive technology (ART) are unavoidably exposed to physical stressors, thus producing reactive oxygen species (ROS) which trigger mitophagy to support embryonic development. However, the mechanisms underlying the regulation of mitophagy in early embryonic development remain largely unexplored. Here, [...] Read more.
Embryos being treated using assisted reproductive technology (ART) are unavoidably exposed to physical stressors, thus producing reactive oxygen species (ROS) which trigger mitophagy to support embryonic development. However, the mechanisms underlying the regulation of mitophagy in early embryonic development remain largely unexplored. Here, we found that Mucin 1 (MUC1) exhibited a uniform distribution in both mouse and human oocytes, and its expression peaked at the blastocyst stage. Further analysis revealed that Muc1 knockout impairs blastocyst formation in vitro. Correspondingly, Muc1 knockout led to the accumulation of mitochondrial reactive oxygen species (mtROS) and a reduction in phosphatase and tensin homolog (PTEN)-induced putative kinase 1 (PINK1)/Parkinson protein 2 (PARK2/Parkin)-dependent mitophagy. Stimulation of mitophagy via low-dose carbonyl cyanide 3-chlorophenylhydrazone (CCCP) treatment rescued the blastocyst formation defect in Muc1-null embryos. Vitamin C supplementation effectively scavenged mtROS and restored developmental competence. Together, our findings establish that MUC1 safeguards early embryonic development by promoting mitophagy to decrease mtROS levels in vitro. Moreover, vitamin C could compensate for Muc1 deficiency by eliminating mtROS. This study not only identified a new function of MUC1 in protecting early embryonic development in vitro, but also revealed a novel mechanism of mitophagy regulation in early embryos, which has potential applications for ART. Full article
(This article belongs to the Special Issue Molecular Bases Underlying Early Embryonic Development in Mammals)
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18 pages, 4173 KB  
Article
Antioxidant Supplementation with Caffeine During Rescue In Vitro Maturation Improves Fertilization and Embryo Development in Women of Advanced Maternal Age
by Gyungbin Lee, Jin Hee Eum, Tae Hyung Kim, Samuel J. Han, Soyoung Kim, Hee Jun Lee and Youn-Jung Kang
Antioxidants 2026, 15(5), 555; https://doi.org/10.3390/antiox15050555 - 27 Apr 2026
Viewed by 4
Abstract
Age-related decline in oocyte quality is closely associated with mitochondrial dysfunction and oxidative imbalance, which disrupt redox-sensitive meiotic signaling and compromise embryo developmental competence. Rescue in vitro maturation (r-IVM) enables the utilization of immature oocytes retrieved during conventional in vitro fertilization (IVF) cycles. [...] Read more.
Age-related decline in oocyte quality is closely associated with mitochondrial dysfunction and oxidative imbalance, which disrupt redox-sensitive meiotic signaling and compromise embryo developmental competence. Rescue in vitro maturation (r-IVM) enables the utilization of immature oocytes retrieved during conventional in vitro fertilization (IVF) cycles. However, the developmental potential of r-IVM oocytes remains limited, particularly in women of advanced maternal age. This study evaluated whether transient caffeine supplementation during r-IVM improves the developmental competence of immature human oocytes in clinical assisted reproduction technology cycles. Immature oocytes obtained during conventional IVF were cultured with or without short-term caffeine exposure during r-IVM prior to standard culture conditions. After maturation, metaphase II oocytes underwent intracytoplasmic sperm injection, and embryonic development was assessed by fertilization rate, day 3 good-quality embryo formation, and blastocyst development. Although caffeine supplementation did not significantly affect nuclear maturation rates, it significantly increased fertilization efficiency and the proportion of good-quality embryos compared with controls. These effects were most pronounced in women aged ≥ 37 years. Time-lapse morphokinetic analysis further revealed more synchronized developmental kinetics in embryos derived from caffeine-treated oocytes, resembling those derived from in vivo-matured oocytes. Collectively, these findings suggest that transient caffeine exposure during r-IVM enhances post-fertilization developmental competence. The underlying mechanisms remain to be elucidated, and future studies are required to determine whether redox-sensitive meiotic pathways and mitochondrial function are involved. Full article
14 pages, 277 KB  
Review
Applying the Lessons of Physiological Cell Culture to Human Embryo Culture for In Vitro Fertilization
by Abigail Pokorski, Ricardo Alva, Jacob E. Wiebe and Jeffrey A. Stuart
Biomolecules 2026, 16(5), 618; https://doi.org/10.3390/biom16050618 - 22 Apr 2026
Viewed by 348
Abstract
Growth media for human cell culture were developed in the twentieth century, when the first immortal human cell lines were established. The nutrient compositions of these media arose not from a desire to reproduce the microenvironment of the cells in vivo, but rather [...] Read more.
Growth media for human cell culture were developed in the twentieth century, when the first immortal human cell lines were established. The nutrient compositions of these media arose not from a desire to reproduce the microenvironment of the cells in vivo, but rather to encourage continuous replicative growth. Armed with comprehensive datasets detailing the metabolomes of the various fluid compartments within which cells reside, cell culturists are now exploring the effects of media designed to reproduce the in vivo environment on cell biology. The early results of this research indicate the media composition has profound impacts on cell form and function. In parallel, taking care to maintain oxygen at the relatively low levels found in vivo also affects many cellular activities. The lessons learned from ‘physiological cell culture’ should be applied to the culture of human embryos in the in vitro fertilization (IVF) clinic, where a critical stage of growth and development might be best supported by recreating, to the greatest extent possible, the environment of the oviduct and uterus. In this review, we translate recent advancements in physiological cell culture to emerging approaches in human embryo culture. Full article
(This article belongs to the Special Issue Feature Papers in Section “Cellular Biochemistry”, 2nd Edition)
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23 pages, 1544 KB  
Article
Reproductive Performance of Male African Catfish (Clarias gariepinus) Breeders Under Varying Hormone Preparations and Doses Under Controlled Conditions
by Joshua L. Superio, Hasmin F. Villanueva, Frenz Charish B. Hechanova, Kenaz Barnie P. Cejar, Fiona L. Pedroso and Casiano H. Choresca
Fishes 2026, 11(4), 208; https://doi.org/10.3390/fishes11040208 - 1 Apr 2026
Viewed by 915
Abstract
The African catfish (Clarias gariepinus) is an important aquaculture species in the Philippines, but it exhibits reproductive dysfunctions in captivity due to the absence of natural spawning cues and culture-induced stress. In hatcheries, sperm collection often requires sacrificing male breeders, limiting [...] Read more.
The African catfish (Clarias gariepinus) is an important aquaculture species in the Philippines, but it exhibits reproductive dysfunctions in captivity due to the absence of natural spawning cues and culture-induced stress. In hatcheries, sperm collection often requires sacrificing male breeders, limiting breeding program applications, and threatening genetic diversity. This study evaluated and optimized hormonal induction protocols to enhance spermiation and fertilization success in male C. gariepinus. Two experimental trials were conducted under controlled hatchery conditions. In Trial 1, human chorionic gonadotropin combined with a dopamine antagonist (hCG + DA; 5000 IU·kg−1 BW + 5 mg·kg−1 BW) and Ovaprim (1.0 mL·kg−1 BW) significantly increased circulating testosterone and estradiol levels, spermiation index, and fertilization outcomes (embryo viability, hatching, and larval survival). In Trial 2, medium to low doses of hCG + DA (3000–5000 IU·kg−1 BW + 5 mg·kg−1 BW) and Ovaprim (0.75–1.0 mL·kg−1 BW) yielded the best performance in terms of hormone levels, spermiation index, and fertilizing capabilities. The presence of a dopamine antagonist (DA) likely contributed to the efficacy of the treatments, since dopamine suppresses the secretion of gonadotropin-releasing hormone (dopaminergic inhibition), and DA counteracts this effect, increasing LH and FSH levels necessary for gametogenesis. Taken together, these results highlight the potential of optimized hormonal protocols to mitigate reproductive dysfunctions in male C. gariepinus in aquaculture settings. Further studies should refine dose combinations, assess the long-term health of broodstock, and evaluate cost-effectiveness to support sustainable broodstock management and genetic conservation. Full article
(This article belongs to the Section Physiology and Biochemistry)
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27 pages, 1290 KB  
Review
The Interplay of Metabolism, Epigenome and Transcriptome Integrity, and the Emerging Role of NLRP7 in Early Human Embryo Arrest
by Radoslav Rangelov, Krassimira Todorova and Soren Hayrabedyan
Appl. Sci. 2026, 16(7), 3150; https://doi.org/10.3390/app16073150 - 25 Mar 2026
Viewed by 561
Abstract
Background/Objectives: Early embryonic arrest during the cleavage stage (days 2–4) accounts for a substantial proportion of developmental failure in in vitro fertilization. This phenomenon remains poorly understood at the molecular level, even in chromosomally normal embryos identified by preimplantation genetic testing. This review [...] Read more.
Background/Objectives: Early embryonic arrest during the cleavage stage (days 2–4) accounts for a substantial proportion of developmental failure in in vitro fertilization. This phenomenon remains poorly understood at the molecular level, even in chromosomally normal embryos identified by preimplantation genetic testing. This review aims to redefine cleavage-stage arrest from a passive energy deficit to a checkpoint-regulated endpoint caused by inadequate coordination among metabolism, transcriptome integrity, and stress-response pathways. Methods: We integrate evidence from long-read transcriptomics, metabolomics, epigenetics, and immunobiology relevant to pre-blastocyst development. These data are assembled into a unifying mechanistic framework and a clinically oriented stratification model, together with candidate multimodal readouts for early classification. Results: We propose a three-axis model linking: (i) metabolic–epigenetic insufficiency, including defective histone lactylation and impaired alpha-ketoglutarate-dependent DNA demethylation; (ii) isoform-level abnormalities, including intron retention and retrotransposon activation within a hidden transcriptomic landscape better resolved by long-read sequencing; and (iii) stress-related immune signaling, in which NLRP7 links alternative splicing and DNA-damage-response dysfunction with mitochondrial stress and p53-associated arrest. Within this framework, we distinguish three molecular arrest states: an early transition failure marked by defective maternal-to-embryonic reprogramming and severe splicing disruption; a metabolically quiescent state that may retain a limited rescue window; and a later stress-associated state characterized by senescence-like features, oxidative stress, and broad transcriptomic and genomic instability. Conclusions: Early embryo arrest should no longer be viewed as a nonspecific developmental failure, but as a mechanistically stratifiable condition with distinct metabolic, transcriptomic, and stress-associated trajectories. A diagnostic platform combining fluorescence lifetime imaging microscopy, long-read sequencing, and digital polymerase chain reaction may improve early mechanistic classification, help identify embryos with possible reversibility, and reduce uncertainty in embryo selection during in vitro fertilization. Full article
(This article belongs to the Special Issue Cell Biology: Latest Advances and Prospects)
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17 pages, 14773 KB  
Article
Chitosan-Entrapped TiO2 Nanoparticles Synthesized Using Calendula officinalis Flower Extract—Photophysical Characterization, Biocompatibility, and Textile Dye Remediation
by Sushmitha Sundarraj, Sridhanya Mysore Shreethar, Nivitha Shri Chandrasekaran and Koyeli Girigoswami
Polymers 2026, 18(6), 745; https://doi.org/10.3390/polym18060745 - 19 Mar 2026
Viewed by 513
Abstract
Effluents from industries, manufacturing companies, textile looms, and floodwater contaminate the surface water reservoirs. This endangers the quality of water for use by humans. Wastewater remediation is one of the ways to recycle the dirty water and make it suitable for use. Photocatalysis [...] Read more.
Effluents from industries, manufacturing companies, textile looms, and floodwater contaminate the surface water reservoirs. This endangers the quality of water for use by humans. Wastewater remediation is one of the ways to recycle the dirty water and make it suitable for use. Photocatalysis is the most common method for wastewater remediation, especially using Titanium dioxide (TiO2) nanoparticles. However, chemical synthesis and direct addition of nanoparticles may cause toxicity to the flora and fauna present in the water body. To address this limitation, we have green-synthesized TiO2 nanoparticles using a horticulture waste, Calendula officinalis dried flower extract and entrapped them in a natural polymer, chitosan (CTS-TiO2-CO nanocomposite). The polymer entrapment ensures biocompatibility as well as reduced aggregation of nanoparticles. The synthesized CTS-TiO2-CO nanocomposite was characterized using UV-visible spectrophotometry, dynamic light scattering, zeta potential, Fourier Transformed Infrared Spectroscopy (FTIR), X-ray diffractometry (XRD), scanning electron microscopy (SEM) and energy-dispersive X-ray spectroscopy (EDAX) analysis. The absorption peak was found at 302 nm, and the hydrodynamic diameter at 490 nm. SEM images show flower-like morphology with 326 nm average particle diameter. The non-toxic dose of the nanoparticles was estimated by MTT assay and zebrafish embryo developmental studies. More than 82% fibroblast cells were viable after treatment with 100 μg/mL of CTS-TiO2-CO nanocomposite. 85% embryos hatched after treatment with 50 μg/mL of CTS-TiO2-CO nanocomposite. Further, the textile dye remediation assessment was done using the dye crystal violet, exhibiting 69.19% dye degradation after 4 h of sunlight exposure. Altogether, the results demonstrate that the CTS-TiO2-CO nanocomposite was effective in the remediation of crystal violet without causing any toxicity up to a dose of 100 μg/mL. Full article
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27 pages, 558 KB  
Review
Translational Fidelity Decline in the Aging Oocyte and Embryo Development
by Charalampos Voros, Fotios Chatzinikolaou, Georgios Papadimas, Ioannis Papapanagiotou, Aristotelis-Marios Koulakmanidis, Diamantis Athanasiou, Kyriakos Bananis, Antonia Athanasiou, Aikaterini Athanasiou, Charalampos Tsimpoukelis, Athanasios Karpouzos, Maria Anastasia Daskalaki, Christina Trakateli, Nana Kojo Koranteng, Marianna Theodora, Nikolaos Thomakos, Panagiotis Antsaklis, Dimitrios Loutradis and Georgios Daskalakis
Int. J. Mol. Sci. 2026, 27(6), 2614; https://doi.org/10.3390/ijms27062614 - 12 Mar 2026
Viewed by 747
Abstract
Female reproductive aging is associated with a progressive decline in oocyte competence and reduced success in assisted reproductive technologies. While chromosomal abnormalities, mitochondrial dysfunction, and DNA damage have been extensively studied, these mechanisms do not fully explain developmental arrest in chromosomally euploid embryos [...] Read more.
Female reproductive aging is associated with a progressive decline in oocyte competence and reduced success in assisted reproductive technologies. While chromosomal abnormalities, mitochondrial dysfunction, and DNA damage have been extensively studied, these mechanisms do not fully explain developmental arrest in chromosomally euploid embryos or the variability in embryo competence. Human oocytes enter a transcriptionally quiescent state during meiotic maturation and rely almost entirely on the regulated translation of stored maternal messenger RNAs to support fertilization and early embryonic development until zygotic genome activation. In this context, translational fidelity becomes a critical determinant of proteome integrity and cellular function. Age-related alterations affecting ribosomal RNA integrity, transfer RNA modification, aminoacylation accuracy, and translational regulatory networks may impair the precision, timing, and coordination of protein synthesis. These defects can disrupt essential processes such as spindle assembly, cytoskeletal organization, and early cleavage dynamics, ultimately compromising embryo viability despite chromosomal normality. In addition, the follicular microenvironment, including redox balance, metabolic support, and signaling pathways, plays a crucial upstream role in maintaining translational integrity. This review integrates mechanistic evidence from molecular, cellular, and developmental studies to propose that progressive decline in translational fidelity represents a fundamental and previously underrecognized driver of reproductive aging. Understanding translational control as a central regulator of oocyte competence may provide new insights into unexplained IVF failure and support the development of novel biomarkers and therapeutic strategies aimed at preserving reproductive potential. Full article
(This article belongs to the Collection Advances in Cell and Molecular Biology)
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18 pages, 1547 KB  
Article
Zona Pellucida Dynamics Integrate Biochemical and Clinical Indicators of Embryo Competence
by Péter Mauchart, Krisztina Gödöny, Rita Jakabfi-Csepregi, Ákos Várnagy, Endre Sulyok and József Bódis
J. Clin. Med. 2026, 15(5), 2038; https://doi.org/10.3390/jcm15052038 - 7 Mar 2026
Viewed by 463
Abstract
Background/Objectives: Dynamic remodeling of the zona pellucida (ZP) is a fundamental biochemical and structural process during human preimplantation development; however, its quantitative characterization and clinical relevance remain incompletely defined. The objective of this study was to evaluate dynamic ZP thinning as a functional [...] Read more.
Background/Objectives: Dynamic remodeling of the zona pellucida (ZP) is a fundamental biochemical and structural process during human preimplantation development; however, its quantitative characterization and clinical relevance remain incompletely defined. The objective of this study was to evaluate dynamic ZP thinning as a functional marker of embryo developmental competence and to examine its relationship with follicular fluid (FF) biomarkers and clinical pregnancy. Methods: This prospective observational study included 47 IVF cycles performed at a single center, yielding 64 transferred blastocysts with complete time-lapse data. ZP thickness was measured from fertilization to 120 h post-fertilization using time-lapse imaging. Two quantitative parameters were derived: the relative thinning ratio (Δrel) and the linear thinning rate (slope). FF concentrations of growth differentiation factor 9 (GDF-9), hyaluronic acid (HA), and syndecan-4 (Syn4) were quantified by ELISA. Embryo-level associations with spontaneous blastocyst hatching were assessed using logistic regression and multivariate analyses, while patient-level models evaluated predictors of clinical pregnancy. Results: Embryos that underwent spontaneous hatching exhibited significantly greater Δrel than non-hatching embryos (p < 0.001). Δrel remained the strongest predictor of hatching in multivariable models (AUC = 0.91). Among FF biomarkers, only GDF-9 showed a positive association with spontaneous hatching. At the patient level, higher Δrel values of transferred embryos were associated with clinical pregnancy (OR 3.65, p = 0.009), whereas FF biomarkers and assisted hatching showed no significant association. Conclusions: Dynamic ZP thinning quantified by Δrel represents a promising indicator of embryo developmental competence. The concordance between embryo-level hatching behavior and patient-level clinical pregnancy suggests potential clinical relevance of ZP dynamics as an integrative embryological marker, warranting validation in larger cohorts. Full article
(This article belongs to the Section Reproductive Medicine & Andrology)
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29 pages, 1238 KB  
Review
Engineering the Human Endometrial–Embryo Interface: Breakthroughs in 3D Uterine Models
by Jenna A. Douglas, Jordan Higgins, Dinasha H. Wimalasiri, Amy L. Winship and Harriet C. Fitzgerald
Biomolecules 2026, 16(3), 383; https://doi.org/10.3390/biom16030383 - 3 Mar 2026
Viewed by 1517
Abstract
Three-dimensional (3D) organoid and co-culture models have emerged as transformative tools for studying human endometrial function, implantation, and placental development, overcoming key limitations of animal and two-dimensional in vitro systems. This review synthesises available information of recent advances in endometrial epithelial organoids (EEOs), [...] Read more.
Three-dimensional (3D) organoid and co-culture models have emerged as transformative tools for studying human endometrial function, implantation, and placental development, overcoming key limitations of animal and two-dimensional in vitro systems. This review synthesises available information of recent advances in endometrial epithelial organoids (EEOs), trophoblast organoids (TBOs), and increasingly complex co-culture platforms incorporating stromal, vascular, and trophoblast compartments to model epithelial–stromal crosstalk, decidualisation, angiogenesis, and embryo implantation. Emerging developments include assembloid systems, synthetic and semi-synthetic extracellular matrices, and microfluidic organ-on-a-chip technologies that enable long-term culture, hormonal responsiveness, and patient-specific modelling. These approaches have recapitulated key features of the mid-secretory endometrium, placental villous architecture, trophoblast differentiation, and early implantation events while revealing disease-associated dysfunctions in conditions such as endometriosis, adenomyosis, polycystic ovarian syndrome, and endometrial cancer. Despite significant progress, current models remain limited by incomplete cellular diversity, polarity constraints, and challenges in fully modelling immune and vascular interactions. Collectively, emerging 3D organoid and co-culture systems provide physiologically relevant platforms to interrogate human reproductive biology, elucidate mechanisms underlying implantation failure and placental disease, and support the development of personalised therapeutic strategies to improve reproductive outcomes. Full article
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16 pages, 1855 KB  
Article
Deleterious NKAP Mutations Are Associated with Musculoskeletal Abnormalities in Hemizygous Males and Skewed X Chromosome Inactivation in Heterozygous Females
by Einat Avishai, Rima Dardik, Linda Rubinstein, Ivan Budnik, Yair Ben Gera, Rachel Twitto-Greenberg, Gili Kenet, Tami Livnat and Sarina Levy-Mendelovich
Int. J. Mol. Sci. 2026, 27(5), 2330; https://doi.org/10.3390/ijms27052330 - 2 Mar 2026
Viewed by 516
Abstract
NKAP (NF-kappa-B-activating protein) is a ubiquitously expressed nuclear protein involved in multiple biological processes. Males with missense NKAP mutations have been reported to present with marfanoid features and behavioral and musculoskeletal abnormalities. We have previously reported that a disruptive NKAP mutation resulted in [...] Read more.
NKAP (NF-kappa-B-activating protein) is a ubiquitously expressed nuclear protein involved in multiple biological processes. Males with missense NKAP mutations have been reported to present with marfanoid features and behavioral and musculoskeletal abnormalities. We have previously reported that a disruptive NKAP mutation resulted in extremely skewed X chromosome inactivation (XCI), leading to phenotypic manifestation of hemophilia A (HA) in a HA carrier. In this study, with the aim of exploring the phenotypic manifestations of deleterious NKAP mutations in males, as well as their involvement in the mechanism of XCI regulation in females, we generated NKAP mutant mice using CRISPR/Cas9 technology. Gait analysis studies conducted in male mice hemizygous for mutant NKAP by the CatWalk XT system revealed significant alterations in gait parameters, consistent with hypotonia reported in human mutant NKAP patients. By breeding mutant NKAP mice with HA mice, we generated a double heterozygous mutant NKAP/HA mouse model, i.e., female mice carrying mutant NKAP with a WT F8 copy on one X chromosome, and WT NKAP with a mutant F8 copy on the other X chromosome. XCI pattern analysis using methylation-sensitive restriction enzymes demonstrated that mutant NKAP/HA females exhibited significant XCI skewing of the X chromosome bearing the mutant NKAP copy. Furthermore, these females exhibited significantly reduced F8 mRNA levels and FVIII (factor VIII) antigen levels, as demonstrated by quantitative RT-PCR and ELISA, respectively. Murine embryonic fibroblasts (MEFs) derived from a hemizygous mutant NKAP embryo exhibited markedly reduced proliferation rate and increased senescence compared to WT NKAP MEFs, suggesting that XCI skewing induced by mutant NKAP results from secondary selection against cells with an active X chromosome bearing the mutant NKAP copy. Full article
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30 pages, 3283 KB  
Article
Biological and Teratogenic Evaluations of Nitrogen Heterocycles for Anticancer Therapy
by Jéssica Celerino dos Santos, Josival Emanuel Ferreira Alves, Rafael David Souto de Azevedo, Josefa Gerlane da Silva, Maria Regina de Oliveira Silva, Lucia Patrícia Bezerra Gomes da Silva, Caio Victor Silva Soares, Jamire Muriel da Silva, Nabuêr Francieli da Silva, Jamerson Ferreira de Oliveira, Maria do Carmo Alves de Lima, Ricardo Olímpio de Moura and Sinara Mônica Vitalino de Almeida
Pharmaceuticals 2026, 19(3), 405; https://doi.org/10.3390/ph19030405 - 1 Mar 2026
Viewed by 620
Abstract
Background: Heterocycle compounds with acridine, quinoline, indole, and pyridine nuclei are potentially active for anticancer activity since they can promote inhibition of vital enzymes, decreasing cell survival after binding to biomolecules. However, unspecific biological interactions can result in unwanted effects, which should [...] Read more.
Background: Heterocycle compounds with acridine, quinoline, indole, and pyridine nuclei are potentially active for anticancer activity since they can promote inhibition of vital enzymes, decreasing cell survival after binding to biomolecules. However, unspecific biological interactions can result in unwanted effects, which should be defined during the synthesis and proposition of new molecules. Thus, the objective of this study was to investigate the biological and teratogenic effects of four nitrogen heterocycles proposed for anticancer therapy. Methods: Four 2-cyano-N-phenylacrylamine type derivatives containing acridine (3a), quinoline (3b), indole (3c), and pyridine (3d) nuclei were synthesized and characterized. They were evaluated for their ability to interact with DNA, physicochemical and pharmacokinetic predictions, in vitro and in silico methodologies, besides in vitro inhibition of the Topoisomerase IIα enzyme, antiproliferative activity in tumor and non-tumor cells, hemolytic activity with human erythrocytes, and in vivo toxicological studies with zebrafish embryos. Results: UV–vis absorption studies with ssDNA revealed different spectroscopic effects, with binding constants (Kb) ranging from 1.41 × 105 to 6.46 × 104 M−1. The fluorescence quenching constant (Ksv) with ethidium bromide (EB) varied between 0.53 and 0.67 × 103 M−1. The compounds intercalated into DNA base pairs, a mechanism confirmed by molecular docking, with 3b (quinoline) showing the most substantial interaction. All derivatives exhibited antitopoisomerase IIα activity at 100 μM and were cytotoxic against MCF-7 and T47-D breast tumor cells, particularly against the more aggressive T47-D lineage. No hemolytic activity was observed in human erythrocytes. In vivo assays in zebrafish embryos showed no toxicological or cardiotoxic effects. However, all compounds altered superoxide dismutase (SOD) and catalase (CAT) enzymatic activity, requiring further studies on reactive oxygen species (ROS) generation to assess potential adverse effects. Furthermore, significant results were observed in the physicochemical and pharmacokinetic parameters of the synthesized compounds. Conclusions: The findings highlight the quinoline derivative (3b) as the most promising nitrogen heterocycle due to its antiproliferative activity and biomolecular interactions without adverse effects in zebrafish embryos, distinguishing it from clinically available agents. Full article
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18 pages, 7544 KB  
Article
m6A RNA Methylation Promotes the Melanoma Metastasis Mediated by Extracellular Vesicle miR-23a-5p
by Chenshi Li, Jie Li, Xue Han, Yuting Chen, Lei Shi, Meng Xiang, Yuhan Zhang, Yan Chen, Bowen Li, Yao Tang, Jiyu Tan, Jiacheng Xie, H. Rosie Xing, Jianyu Wang, Mo Chen and Guoning Huang
Cancers 2026, 18(5), 792; https://doi.org/10.3390/cancers18050792 - 28 Feb 2026
Viewed by 530
Abstract
Background/Objectives: Melanoma, characterized by high rates of metastasis and recurrence, is a particularly aggressive malignant tumor. The underlying mechanisms driving its progression remain enigmatic. The close interplay between tumor and non-tumor cells is pivotal, significantly shaping the tumor microenvironment. Extracellular vesicles emerge [...] Read more.
Background/Objectives: Melanoma, characterized by high rates of metastasis and recurrence, is a particularly aggressive malignant tumor. The underlying mechanisms driving its progression remain enigmatic. The close interplay between tumor and non-tumor cells is pivotal, significantly shaping the tumor microenvironment. Extracellular vesicles emerge as a crucial vector influencing this environment, as they can modulate cellular mechanisms and biological functions—marking a key frontier in tumor mechanism research. However, the potential impact of intercellular communication on tumor cell biology remains largely unexplored. Methods: In the study, we employed a pair of cell lines derived from melanoma M14 cells, designated as highly metastatic cells (POL cells) and the low metastatic cells (OL cells), and elucidate their characteristics. Results: Our findings revealed that POL cells can potentiate the metastatic potential of OL cells through the transfer of extracellular vesicles, which harbor functional microRNAs, specifically miR-23a-5p in this context. Upon entering OL cells, the EV-miR-23a-5p orchestrates changes in the m6A modification levels of the mRNA of tumor suppressor genes Mtus1 and Prrg4. Conclusions: This modulation subsequently influences the expression of these genes and, in turn, the invasive behavior of OL cells. Full article
(This article belongs to the Special Issue The Role of Regulatory Non-Coding RNA in Cancer (2nd Edition))
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33 pages, 2334 KB  
Review
Oxidative Stress, Sperm DNA Fragmentation, or Both? Optimizing Test Selection in Male Infertility Evaluation
by Aris Kaltsas, Stamatis Papaharitou, Pallav Sengupta, Ramadan Saleh and Ashok Agarwal
Antioxidants 2026, 15(3), 293; https://doi.org/10.3390/antiox15030293 - 26 Feb 2026
Viewed by 1549
Abstract
Oxidative stress (OS) and sperm DNA fragmentation (SDF) are complementary contributors to male infertility. OS characterizes a compromised seminal redox status, whereas SDF quantifies downstream genomic damage. Human sperm are highly susceptible to redox damage due to lipid-rich membranes and disrupted post-meiotic DNA-repair [...] Read more.
Oxidative stress (OS) and sperm DNA fragmentation (SDF) are complementary contributors to male infertility. OS characterizes a compromised seminal redox status, whereas SDF quantifies downstream genomic damage. Human sperm are highly susceptible to redox damage due to lipid-rich membranes and disrupted post-meiotic DNA-repair capacity. Excess reactive oxygen species (ROS) can cause lipid peroxidation, oxidative base lesions, and DNA strand breaks that impair fertilization, embryo development, and pregnancy outcomes. This review explains how OS promotes genomic instability and summarizes the main laboratory assays that assess redox status and SDF in semen. These include direct ROS chemiluminescence assay, oxidation–reduction potential, total antioxidant capacity/ferric reducing antioxidant power, and lipid peroxidation biomarkers, alongside SDF platforms (Sperm Chromatin Structure Assay, terminal deoxynucleotidyl transferase dUTP nick-end labeling, alkaline/neutral Comet, and sperm chromatin dispersion). Additionally, guideline-aligned indications are highlighted to clarify the conditions for testing OS and SDF. OS testing is most relevant in men with leukocytospermia or suspected genital tract infection or inflammation, including dysbiosis; in cases of major modifiable exposures such as smoking or heat; and for early monitoring after treatment. SDF testing is particularly informative in couples with recurrent pregnancy loss and in unexplained infertility with normal semen parameters. Combined OS and SDF testing is recommended in clinical varicocele, repeated in vitro fertilization (IVF) or intracytoplasmic sperm injection (ICSI) failure, poor embryo development, and follow-up after targeted therapy. Management centers on treating infection and inflammation, improving lifestyle and environmental factors, considering varicocelectomy when indicated, using targeted antioxidant therapy in men with documented OS, and selectively applying sperm selection technologies or testicular sperm for ICSI when SDF remains high. Priorities include assay standardization, etiologic attribution of DNA damage, and trials testing OS/SDF-guided pathways with live birth as the primary endpoint. When used selectively and in the appropriate context, OS and SDF testing can help refine diagnosis, improve counseling, and help personalize care of infertile couples. Full article
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25 pages, 6702 KB  
Article
Soft Optical Sensor for Embryo Quality Evaluation Based on Multi-Focal Image Fusion and RAG-Enhanced Vision Transformers
by Domas Jonaitis, Vidas Raudonis, Egle Drejeriene, Agne Kozlovskaja-Gumbriene and Andres Salumets
Sensors 2026, 26(5), 1441; https://doi.org/10.3390/s26051441 - 25 Feb 2026
Viewed by 374
Abstract
Assessing human embryo quality is a critical step in in vitro fertilization (IVF), yet traditional manual grading remains subjective and physically limited by the shallow depth-of-field in conventional microscopy. This study develops a novel “soft optical sensor” architecture that transforms standard optical microscopy [...] Read more.
Assessing human embryo quality is a critical step in in vitro fertilization (IVF), yet traditional manual grading remains subjective and physically limited by the shallow depth-of-field in conventional microscopy. This study develops a novel “soft optical sensor” architecture that transforms standard optical microscopy into an automated, high-precision instrument for embryo quality assessment. The proposed system integrates two key computational innovations: (1) a multi-focal image fusion module that reconstructs lost morphological details from Z-stack focal planes, effectively creating a 3D-aware representation from 2D inputs; and (2) a retrieval-augmented generation (RAG) framework coupled with a Swin Transformer to provide both high-accuracy classification and explainable clinical rationales. Validated on a large-scale clinical dataset of 102,308 images (prior to augmentation), the system achieves a diagnostic accuracy of 94.11%. This performance surpasses standard single-plane analysis methods by 9.43%, demonstrating the critical importance of fusing multi-focal data. Furthermore, the RAG module successfully grounds model predictions in standard ESHRE consensus guidelines, generating natural language explanations. The results demonstrate that this soft sensor approach significantly reduces inter-observer variability and offers a robust tool for standardized morphological assessment, though prospective validation against live birth outcomes remains essential for clinical adoption. Full article
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