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Keywords = holoparasitic plant

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15 pages, 2413 KiB  
Article
Soil Inoculated with Streptomyces rochei D74 Invokes the Defense Mechanism of Helianthus annuus Against Orobanche cumana
by Jiao Xi, Tengqi Xu, Zanbo Ding, Chongsen Li, Siqi Han, Ruina Liang, Yongqing Ma, Quanhong Xue and Yanbing Lin
Agriculture 2025, 15(14), 1492; https://doi.org/10.3390/agriculture15141492 - 11 Jul 2025
Viewed by 313
Abstract
Orobanche cumana Wallr. is a root parasitic plant that causes considerable yield losses of up to 50% in sunflower Helianthus annuus plantations. The holoparasite fulfills its entire demand for water, minerals, and organic nutrients from the host’s vascular system. Agronomic practices alone are [...] Read more.
Orobanche cumana Wallr. is a root parasitic plant that causes considerable yield losses of up to 50% in sunflower Helianthus annuus plantations. The holoparasite fulfills its entire demand for water, minerals, and organic nutrients from the host’s vascular system. Agronomic practices alone are not effective in controlling this pest. This study investigated the mechanism of a verified plant growth-promoting strain, Streptomyces rochei D74, on the inhibition of the parasitism of O. cumana in a co-culture experiment. We conducted potted and sterile co-culture experiments using sunflower, O. cumana, and S. rochei D74. Our results suggest that the inoculated bacteria invoked the sunflower systemic resistance (SAR and ISR) by increasing the activity of resistance-related enzymes (SOD, POD, PPO, and PAL), the gene expression of systemic resistance marker genes (PR-1 and NPR1), ethylene synthesis genes (HACS. 1 and ACCO1), and JA synthesis genes (pin2 and lox). The expression levels of ISR marker genes (lox, HACS. 1, ACCO1, and pin2) increased by 1.66–7.91-fold in the seedling stage. Simultaneously, S. rochei D74 formed a protective layer on the sunflower root surface, preventing O. cumana from connecting to the vascular system of the sunflower roots. In addition, S. rochei D74 reduced 5DS synthesis of the strigol precursor substance, resulting in a reduction in O. cumana germination. These results demonstrated that the S. rochei D74 strain improved systemic resistance and decreased seed germination to prevent O. cumana parasitism. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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23 pages, 2966 KiB  
Review
Bioactive Components, Pharmacological Properties, and Applications of Cistanche deserticola Y. C. Ma: A Comprehensive Review
by Xiaofeng Liu, Zichao Yang, Minjun Han, Yao Zhang, Hussain Muhammad, Hao Zhong and Rongfa Guan
Nutrients 2025, 17(9), 1501; https://doi.org/10.3390/nu17091501 - 29 Apr 2025
Viewed by 1319
Abstract
Cistanche deserticola Y. C. Ma (C. deserticola), a holoparasitic desert plant traditionally revered as “desert ginseng”, has emerged as a versatile resource with significant applications in both medicinal and dietary contexts. This comprehensive review systematically explores its bioactive constituents, including phenylethanol [...] Read more.
Cistanche deserticola Y. C. Ma (C. deserticola), a holoparasitic desert plant traditionally revered as “desert ginseng”, has emerged as a versatile resource with significant applications in both medicinal and dietary contexts. This comprehensive review systematically explores its bioactive constituents, including phenylethanol glycosides (PhGs), iridoids, lignans, and polysaccharides, and elucidates their multifaceted pharmacological properties. Contemporary research substantiates the therapeutic potential of C. deserticola, demonstrating its anti-inflammatory, antioxidant, antitumor, neuroprotective, and immunomodulatory effects. Mechanism analysis elucidated its anti-fatigue and immune-enhancing activities, primarily through the modulation of pivotal signaling pathways, including NF-κB, AMPK, and TLR4. The review also highlights recent regulatory advancements in China, which have approved C. deserticola as a functional food ingredient, complementing its traditional uses in kidney yang tonification and promoting intestinal health. Despite its promising attributes, challenges related to sustainable cultivation and clinical application remain. By integrating ethnopharmacological wisdom with modern scientific evidence, this work lays a robust foundation for advancing the applications of C. deserticola in nutraceuticals and therapeutics. Full article
(This article belongs to the Special Issue Antioxidants in Diet: Metabolic Impacts and Mechanisms of Action)
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13 pages, 1566 KiB  
Article
Analysis of Variations in the Flavonoid Profiles of Cuscuta campestris and Cuscuta epithymum in Bulgaria as a Potential Chemotaxonomical Marker
by Bilyana Chakarova, Lyuben Zagorchev, Kalina Pachedjieva, Anita Tosheva, Tzvetelina Zagorcheva, Krasimir Rusanov and Denitsa Teofanova
Plants 2025, 14(8), 1220; https://doi.org/10.3390/plants14081220 - 16 Apr 2025
Cited by 1 | Viewed by 594
Abstract
Holoparasitic plants of the genus Cuscuta are generally considered prominent agricultural pests. In addition to their negative economic effect on agriculture and their impact on natural plant societies, they have also been long known in East Asian as medicinal plants with beneficial properties. [...] Read more.
Holoparasitic plants of the genus Cuscuta are generally considered prominent agricultural pests. In addition to their negative economic effect on agriculture and their impact on natural plant societies, they have also been long known in East Asian as medicinal plants with beneficial properties. This underlines the fact that Cuscuta spp. are particularly rich in specialized metabolites, flavonoids, alkaloids, and cumarines, among others. In addition to several well-characterized species, most of the species variety within the genus remains largely unstudied. In the present study we aimed to compare the flavonoid profiles of natural populations of two of the most abundant Cuscuta species in Bulgaria—the native C. epithymum, and the naturalized C. campestris. Based on HPLC-MS/MS analysis, a total of 13 polyphenolics compounds were annotated, with hyperoside and isoquercitrin being some of the most abundant. Some notable differences were found, like the complete absence of dicaffeoylquinic acid in C. campestris, and kaempferol-3,7-O-diglucoside and kaempferol 3-O-β-(6′′-O-trans-p-coumaroyl)-glucopyranoside in C. epithymum. The population of the two species clustered separately from each other, with some variations, but with no clear pattern of dependence on the locality or host species. Based on the results it can be concluded that flavonoids may be used as chemotaxonomical markers within the genus, showing that even in different climatic conditions and different host ranges, the two studied species clearly differed from each other. Also, their rich content emphasizes the potential of these parasites as a source of bioactive compounds. Full article
(This article belongs to the Special Issue Phytochemical Analysis and Metabolic Profiling in Plants)
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14 pages, 5382 KiB  
Article
Effects of Exogenous Phenolic Acids on Haustorium Induction of Cistanche deserticola Seeds Based on Host Metabolome Data
by Shixin Tan, Xiuli He, Ru Feng, Liang Shen, Qingyun Pang, Rong Xu, Sai Liu and Changqing Xu
Int. J. Mol. Sci. 2025, 26(7), 3300; https://doi.org/10.3390/ijms26073300 - 2 Apr 2025
Viewed by 360
Abstract
Cistanche deserticola, a holoparasitic plant widely used in traditional Chinese medicine, relies on chemical signals from its host plant, Haloxylon ammodendron, to initiate seed germination and haustorium induction. This study employed UPLC-MS/MS to analyze the root metabolites of H. ammodendron. [...] Read more.
Cistanche deserticola, a holoparasitic plant widely used in traditional Chinese medicine, relies on chemical signals from its host plant, Haloxylon ammodendron, to initiate seed germination and haustorium induction. This study employed UPLC-MS/MS to analyze the root metabolites of H. ammodendron. The results showed that 11 substances such as phenolic acids, flavonoids, and alkaloids were mainly contained in the roots of H. ammodendron, among which phenolic acids accounted for the largest proportion, accounting for 18.00% in winter samples and 16.11% in autumn samples. Based on the reported exogenous substances that promote haustorium induction in C. deserticola and the differential metabolites in H. ammodendron roots, we selected seven exogenous signaling substances: 2,6-dimethoxy-1,4-benzoquinone, resorcinol, ferulic acid, syringic acid, vanillic acid, vanillin, and pelargonidin. Through concentration-gradient experiments (0.1–100 μM), we assessed their effects on haustorium induction in C. deserticola seeds. The results showed that among the seven substances, syringic acid, vanillic acid, and vanillin had the best impact on promoting the haustorium induction of C. deserticola seeds. Vanillic acid had the best impact at the concentration of 10 μmol/L, and the highest haustorium induction rate was 50.2%. There was no significant difference in the concentrations of vanillin and syringic acid. The results showed that phenolic acids in the host root system stimulated haustoria induction in C. deserticola seeds, with different substances requiring different optimal concentrations. This study not only identifies specific phenolic acids that enhance C. deserticola productivity but also establishes a chemical ecology framework for investigating host–parasite interactions in other root parasitic species. Full article
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15 pages, 2964 KiB  
Article
Do Faster-Growing Holoparasitic Plant Species Exhibit Broader Niches and Wider Global Distributions?
by Quanzhong Zhang and Jinming Hu
Plants 2025, 14(6), 831; https://doi.org/10.3390/plants14060831 - 7 Mar 2025
Viewed by 657
Abstract
Parasitic organisms, as an important component of ecosystems, have long been a focal point in ecological research, particularly concerning the relationship between their growth characteristics, ecological niche, and distribution patterns. This study selects the holoparasitic plant species Cuscuta campestris Yunck., Cuscuta australis R.Br., [...] Read more.
Parasitic organisms, as an important component of ecosystems, have long been a focal point in ecological research, particularly concerning the relationship between their growth characteristics, ecological niche, and distribution patterns. This study selects the holoparasitic plant species Cuscuta campestris Yunck., Cuscuta australis R.Br., and Cuscuta chinensis Lam. from the Cuscuta subgenus Grammica as model species to explore the relationship between the growth rate, ecological niche breadth, and global distribution patterns of parasitic plants. Through greenhouse experiments and data analysis, the main findings of this study indicate a strong positive correlation between the growth rate, ecological niche breadth, number of global occurrence points, and global distribution area for C. campestris, C. australis, and C. chinensis. The significant correlation between growth rate and ecological niche breadth suggests that the intrinsic growth characteristics of parasitic plants may significantly influence their realized ecological niche. Furthermore, the experimental results show that when C. campestris, C. australis, and C. chinensis parasitize non-native hosts from the Americas, they produce greater biomass than when parasitizing native hosts from China. In conclusion, this study provides new support for ecological theories regarding species adaptability, distribution patterns, and environmental influences, and offers directions for future research. Full article
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14 pages, 2837 KiB  
Article
Alternaria alternata JTF001 Metabolites Recruit Beneficial Microorganisms to Reduce the Parasitism of Orobanche aegyptiaca in Tomato
by Wenfang Luo, Xingxing Ping, Junhui Zhou, Shuaijun Gao, Xin Huang, Suqin Song, Jianjun Xu and Wei He
Biology 2025, 14(2), 116; https://doi.org/10.3390/biology14020116 - 23 Jan 2025
Viewed by 1100
Abstract
Orobanche aegyptiaca is a holoparasitic weed that extracts water, nutrients, and growth regulators from host plants, leading to significant yield and quality losses. Biocontrol microbial metabolites have been shown to enhance plant resistance against parasitic plants, yet the underlying microbial mechanisms remain poorly [...] Read more.
Orobanche aegyptiaca is a holoparasitic weed that extracts water, nutrients, and growth regulators from host plants, leading to significant yield and quality losses. Biocontrol microbial metabolites have been shown to enhance plant resistance against parasitic plants, yet the underlying microbial mechanisms remain poorly understood. In this study, we investigated the role of Alternaria alternata JTF001 (J1) microbial metabolites in recruiting beneficial microbes to the tomato rhizosphere and promoting the establishment of a disease-suppressive microbiome. Pot experiments revealed that J1 metabolite application significantly reduced O. aegyptiaca parasitism. High-throughput sequencing of full-length 16S rRNA genes and ITS regions, along with in vitro culture assays, demonstrated an increase in the abundance of plant-beneficial bacteria, particularly Pseudomonas spp. The three candidate beneficial strains (zOTU_388, zOTU_533, and zOTU_2335) showed an increase of 5.7-fold, 5.4-fold, and 4.7-fold, respectively. These results indicate that J1 metabolites induce the recruitment of a disease-suppressive microbiome in tomato seedlings, effectively inhibiting O. aegyptiaca parasitism. Our findings suggest that microbial metabolites represent a promising strategy for managing parasitic plant infestations through microbial community modulation, offering significant implications for sustainable agricultural practices. Full article
(This article belongs to the Section Plant Science)
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18 pages, 5796 KiB  
Article
Revealing the Dynamic History of Parasitic Plant Plastomes via Structural Characterization, Comparative Analysis, and Phylogenomics
by Lubna, Sajjad Asaf, Rahmatullah Jan, Saleem Asif, Saqib Bilal, Kyung-Min Kim, In-Jung Lee and Ahmed AL-Harrasi
Genes 2024, 15(12), 1577; https://doi.org/10.3390/genes15121577 - 8 Dec 2024
Viewed by 1349
Abstract
Background: The shift to a parasitic lifestyle in plants often leaves distinct marks on their plastid genomes, given the central role plastids play in photosynthesis. Studying these unique adaptations in parasitic plants is essential for understanding the mechanisms and evolutionary patterns driving plastome [...] Read more.
Background: The shift to a parasitic lifestyle in plants often leaves distinct marks on their plastid genomes, given the central role plastids play in photosynthesis. Studying these unique adaptations in parasitic plants is essential for understanding the mechanisms and evolutionary patterns driving plastome reduction in angiosperms. By exploring these changes, we can gain deeper insights into how parasitism reshapes the genomic architecture of plants. Method: This study analyzed and compared the plastomes of 113 parasitic plants from different families. Results: The Orobanchaceae family (hemiparasitic plants) displayed the largest plastome size, while Apodanthaceae exhibited the shortest. Additionally, Orobanchaceae showcased little to no gene loss in their plastomes. However, holoparasitic species typically had reduced plastome sizes. Convolvulaceae exhibited significantly reduced plastome sizes due to high gene loss, and Apodanthaceae retained only a few genes. Gene divergence among different families was also investigated, and rps15, rps18, and rpl33 in Orobanchaceae; accD and ycf1 in Convolvulaceae; atpF and ccsA in Loranthaceae; and rpl32 in Santalaceae showed greater divergence. Additionally, Orobanchaceae had the highest numbers of all repeat types, whereas Loranthaceae and Convolvulaceae exhibited the lowest repeat numbers. Similarly, more simple sequence repeats were reported in Loranthaceae and Santalaceae. Our phylogenetic analysis also uncovered a distinct clade comprising Loranthaceae, with a single Schoepfiaceae species clustering nearby. Contrary to expectations, parasitic and hemiparasitic plants formed mixed groupings instead of segregating into separate clades. Conclusions: These findings offer insights into parasitic plants’ evolutionary relationships, revealing shared and divergent genomic features across diverse lineages. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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17 pages, 5043 KiB  
Article
Secretory Proteins Are Involved in the Parasitism of Melon by Phelipanche aegyptiaca During the Attachment Stage
by Lifeng Xiao, Qiuyue Zhao, Xiaolei Cao, Zhaoqun Yao and Sifeng Zhao
Plants 2024, 13(21), 3083; https://doi.org/10.3390/plants13213083 - 1 Nov 2024
Cited by 1 | Viewed by 1252
Abstract
Parasitic plants represent a significant challenge in global agriculture, with Broomrape (Orobanche/Phelipanche spp.) being a notable example of a holoparasitic species that targets the roots of host plants. This study employed comparative transcriptomics to investigate the mechanisms underlying the parasitism [...] Read more.
Parasitic plants represent a significant challenge in global agriculture, with Broomrape (Orobanche/Phelipanche spp.) being a notable example of a holoparasitic species that targets the roots of host plants. This study employed comparative transcriptomics to investigate the mechanisms underlying the parasitism of P. aegyptiaca on melon, focusing on both resistant and susceptible interactions. The findings indicate that the critical phase of P. aegyptiaca parasitism occurs during the post-attachment stage. It is suggested that peptidases may play a role in the development of invasive cells, while cell wall-degrading enzymes (CWDEs) are likely involved in cell wall modification and degradation, and transferases, elicitors, and effectors may play a role in immune regulation. In this study, 25 tobacco rattle virus (TRV) recombinant vectors were successfully constructed and functionally validated using a host-induced gene silencing assay to explore the functions of candidate-secreted effector proteins. The results revealed that silencing Cluster-107894.0, Cluster-11592.0, and Cluster-12482.0 significantly decreased the parasitism rate of P. aegyptiaca on Nicotiana benthamiana. Notably, Cluster-107849.0 encodes a cellulase with hydrolase activity, Cluster-11592.0 encodes a periodic-dependent kinase inhibitor with phosphoprotein activity, and Cluster-12482.0 encodes a glucan 1,3-β-glucosidase with hydrolase activity. These findings potentially offer a novel theoretical framework and justification for understanding host–parasite plant interactions, and suggest new avenues for developing crop varieties resistant to parasitic infestation. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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15 pages, 682 KiB  
Review
Parasitic Plants—Potential Vectors of Phytopathogens
by Stefan Savov, Bianka Marinova, Denitsa Teofanova, Martin Savov, Mariela Odjakova and Lyuben Zagorchev
Pathogens 2024, 13(6), 484; https://doi.org/10.3390/pathogens13060484 - 7 Jun 2024
Cited by 2 | Viewed by 2631
Abstract
Parasitic plants represent a peculiar group of semi- or fully heterotrophic plants, possessing the ability to extract water, minerals, and organic compounds from other plants. All parasitic plants, either root or stem, hemi- or holoparasitic, establish a vascular connection with their host plants [...] Read more.
Parasitic plants represent a peculiar group of semi- or fully heterotrophic plants, possessing the ability to extract water, minerals, and organic compounds from other plants. All parasitic plants, either root or stem, hemi- or holoparasitic, establish a vascular connection with their host plants through a highly specialized organ called haustoria. Apart from being the organ responsible for nutrient extraction, the haustorial connection is also a highway for various macromolecules, including DNA, proteins, and, apparently, phytopathogens. At least some parasitic plants are considered significant agricultural pests, contributing to enormous yield losses worldwide. Their negative effect is mainly direct, by the exhaustion of host plant fitness and decreasing growth and seed/fruit formation. However, they may pose an additional threat to agriculture by promoting the trans-species dispersion of various pathogens. The current review aims to summarize the available information and to raise awareness of this less-explored problem. We further explore the suitability of certain phytopathogens to serve as specific and efficient methods of control of parasitic plants, as well as methods for control of the phytopathogens. Full article
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21 pages, 3013 KiB  
Review
Biology of Hemiparasitic Rhinanthus Species in the Context of Grassland Biodiversity
by Gederts Ievinsh
Land 2024, 13(6), 814; https://doi.org/10.3390/land13060814 - 6 Jun 2024
Cited by 1 | Viewed by 2289
Abstract
The aim of the present review is to compile and analyze information on biology of Rhinanthus species in the context of grassland biodiversity. Root hemiparasites have been relatively less studied in comparison to economically important holoparasitic weed species. Rhinanthus species appear to be [...] Read more.
The aim of the present review is to compile and analyze information on biology of Rhinanthus species in the context of grassland biodiversity. Root hemiparasites have been relatively less studied in comparison to economically important holoparasitic weed species. Rhinanthus species appear to be genetically polymorphic, but also possess high phenotypic plasticity, and ecological factors are important determinants in evolution of specialization to most appropriate hosts. Rhinanthus individuals have a relatively short life span, and flowering is a photoperiod- or host plant-independent phenomenon. Both insect pollination and self-pollination can occur. Seeds do not form a persistent soil seed bank and have physiological dormancy broken by stratification. In general, Rhinanthus species have low host specificity, but there clearly are ‘preferred’ or ‘avoided’ hosts in natural conditions. In controlled conditions, interaction with most grass species result in more prominent parasite growth stimulation in comparison to that of legumes, and, especially, forbs, but there are significant gradations and exceptions. Ecological requirements of Rhinanthus species have been rarely studied, but it can be expected that significant tolerance against mineral nutrient heterogeneity and water shortage can be found. It seems that host plant characteristics are important determinants of the environmental resilience of Rhinanthus. Parasites not only obtain resources (water and minerals) from host plants but also negatively affect their physiological functions. The most intriguing and practically unexplored question is the exchange of chemical signals between the Rhinanthus parasite and the host plant. Extending this idea, it can be predicted that signals will also be exchanged between multiple host plants whose roots are connected through the parasite. It is highly possible that the exchange of small RNAs between plants could influence their environmental tolerance. Host selectivity forms the functional basis of changes in species diversity in grasslands, but the outcome seems to be highly dependent on other conditions, especially, soil edaphic factors. Development of new model systems is necessary to further expand our knowledge about the complex effects of parasitic plants on ecosystems. Full article
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17 pages, 3215 KiB  
Article
Jasmonate ZIM Domain Protein (JAZ) Gene SLJAZ15 Increases Resistance to Orobanche aegyptiaca in Tomato
by Siyu Chen, Lu Zhang, Qianqian Ma, Meixiu Chen, Xiaolei Cao, Sifeng Zhao and Xuekun Zhang
Plants 2024, 13(11), 1493; https://doi.org/10.3390/plants13111493 - 29 May 2024
Cited by 1 | Viewed by 2041
Abstract
Orobanche aegyptiaca Pers. is a holoparasitic plant that severely reduces tomato (Solanum lycopersicum L.) production in China. However, there is a lack of effective control methods and few known sources of genetic resistance. In this study, we focused on key genes in [...] Read more.
Orobanche aegyptiaca Pers. is a holoparasitic plant that severely reduces tomato (Solanum lycopersicum L.) production in China. However, there is a lack of effective control methods and few known sources of genetic resistance. In this study, we focused on key genes in the JAZ family, comparing the JAZ family in Arabidopsis thaliana (L. Heynh.) to the tomato genome. After identifying the JAZ family members in S. lycopersicum, we performed chromosomal localization and linear analysis with phylogenetic relationship analysis of the JAZ family. We also analyzed the gene structure of the JAZ gene family members in tomato and the homology of the JAZ genes among the different species to study their relatedness. The key genes for O. aegyptiaca resistance were identified using VIGS (virus-induced gene silencing), and the parasitization rate of silenced tomato plants against O. aegyptiaca increased by 47.23–91.13%. The genes were localized in the nucleus by subcellular localization. Heterologous overexpression in A. thaliana showed that the key gene had a strong effect on the parasitization process of O. aegyptiaca, and the overexpression of the key gene reduced the parasitization rate of O. aegyptiaca 1.69-fold. Finally, it was found that the SLJAZ15 gene can positively regulate the hormone content in tomato plants and affect plant growth and development, further elucidating the function of this gene. Full article
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20 pages, 1128 KiB  
Article
Improving the Functionality of Yogurt after Fortification with a Synbiotic Combination of a Potential Probiotic and Bacteriocin-Producing Bacteria and Hydnora abyssinica Phytosomes
by Ghoson Daba, Waill Elkhateeb, Tarek Nour Soliman, Asmaa Negm El-Dein and Takeshi Zendo
Processes 2024, 12(4), 727; https://doi.org/10.3390/pr12040727 - 3 Apr 2024
Cited by 7 | Viewed by 1841
Abstract
Functional dairy products are attracting consumers’ attention, as they simultaneously have nutritional and health benefits. Hence, we aimed in this study to fortify a dairy product (yogurt) with phytosomes of extract from Hydnora abyssinica (a holoparasitic plant that has ethnobotanical value) and a [...] Read more.
Functional dairy products are attracting consumers’ attention, as they simultaneously have nutritional and health benefits. Hence, we aimed in this study to fortify a dairy product (yogurt) with phytosomes of extract from Hydnora abyssinica (a holoparasitic plant that has ethnobotanical value) and a potential bacteriocin-producing probiotic lactic acid bacterium (LAB). Goat cheese was screened for LAB with promising antimicrobial activity, and the safety and probiotic potential of the selected isolate were studied. As a result, strain GA5 was selected due to its wide antimicrobial activity that was suggested to be caused by bacteriocin production. Moreover, this strain showed promising stress tolerance, in vitro antioxidant activity (95 ± 2.8%), and hydrophobic potential (87.18 ± 3.43%). Strain GA5 was molecularly identified as Lactiplantibacillus plantarum GA5. On the other hand, a hydromethanolic extract was prepared from H. abyssinica flowers, and its prebiotic potential and polyphenol content were evaluated. This extract was also encapsulated in phytosomes. Then, the physical and morphological characteristics of prepared phytosomes were studied. Yogurt fortified with these ingredients (L. plantarum GA5 together with free H. abyssinica extract or its extract encapsulated in phytosomes) showed higher antioxidant content, viscosity, texture profile, and sensory properties than the control. Furthermore, the yogurt remained unspoiled for over 21 days, indicating that the added ingredients prolonged its shelf life. As far as we know, this is the first study describing the fortification of yogurt with H. abyssinica phytosomes and a potential bacteriocin-producing probiotic LAB. Full article
(This article belongs to the Special Issue Microbiotechnology in Cosmetics, Pharmaceuticals and Food)
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18 pages, 4255 KiB  
Article
Comprehensive Analysis of the Complete Mitochondrial Genome of Rehmannia chingii: An Autotrophic Species in the Orobanchaceae Family
by Ying Han, Yan-Lei Feng, Jie Wang, Shan-Shan Zhu, Xin-Jie Jin, Zhi-Qiang Wu and Yong-Hua Zhang
Genes 2024, 15(1), 98; https://doi.org/10.3390/genes15010098 - 15 Jan 2024
Cited by 7 | Viewed by 2567
Abstract
Rehmannia chingii is an important medicinal plant with immense value in scientific research. However, its mitochondrial genome (mitogenome) has not yet been characterized. Herein, based on whole-genome Illumina short reads and PacBio HiFi reads, we obtained the complete mitogenome of R. chingii through [...] Read more.
Rehmannia chingii is an important medicinal plant with immense value in scientific research. However, its mitochondrial genome (mitogenome) has not yet been characterized. Herein, based on whole-genome Illumina short reads and PacBio HiFi reads, we obtained the complete mitogenome of R. chingii through a de novo assembly strategy. We carried out comparative genomic analyses and found that, in comparison with the plastid genome (plastome) showing a high degree of structural conservation, the R. chingii mitogenome structure is relatively complex, showing an intricate ring structure with 16 connections, owing to five repetitive sequences. The R. chingii mitogenome was 783,161 bp with a GC content of 44.8% and contained 77 genes, comprising 47 protein-coding genes (CDS), 27 tRNA genes, and 3 rRNA genes. We counted 579 RNA editing events in 47 CDS and 12,828 codons in all CDSs of the R. chingii mitogenome. Furthermore, 24 unique sequence transfer fragments were found between the mitogenome and plastome, comprising 8 mitogenome CDS genes and 16 plastome CDS genes, corresponding to 2.39% of the R. chingii mitogenome. Mitogenomes had shorter but more collinear regions, evidenced by a comparison of the organelles of non-parasitic R. chingii, hemiparasitic Pedicularis chinensis, and holoparasitic Aeginetia indica in the Orobanchaceae family. Moreover, from non-parasitic to holoparasitic species, the genome size in the mitogenomes of Orobanchaceae species did not decrease gradually. Instead, the smallest mitogenome was found in the hemiparasitic species P. chinensis, with a size of 225,612 bp. The findings fill the gap in the mitogenome research of the medicinal plant R. chingii, promote the progress of the organelle genome research of the Orobanchaceae family, and provide clues for molecular breeding. Full article
(This article belongs to the Special Issue Advances in Genetics and Genomics of Plants)
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17 pages, 3901 KiB  
Article
Dodder Parasitism Leads to the Enrichment of Pathogen Alternaria and Flavonoid Metabolites in Soybean Root
by Wen Luo, Yuanli Li, Ruiping Luo, Gehong Wei, Yongxin Liu and Weimin Chen
Agronomy 2023, 13(6), 1571; https://doi.org/10.3390/agronomy13061571 - 9 Jun 2023
Cited by 1 | Viewed by 2776
Abstract
Dodders (Cuscuta chinensis) are rootless and holoparasitic herbs that can infect a variety of host plants, including the vitally important economic and bioenergy crop soybean (Glycine max). Although dodder parasitism severely affects the physiology of host plants, little is [...] Read more.
Dodders (Cuscuta chinensis) are rootless and holoparasitic herbs that can infect a variety of host plants, including the vitally important economic and bioenergy crop soybean (Glycine max). Although dodder parasitism severely affects the physiology of host plants, little is known about its effects on fungal communities and root secondary metabolites in hosts. In this study, variations in root-associated fungal communities and root metabolites of soybean under different parasitism conditions were investigated using ITS rRNA gene sequencing and UPLC–MS/MS metabolome detection technologies. The results showed that dodder parasitism significantly altered the composition and diversity of the fungal communities in the rhizosphere and endosphere of soybean. The relative abundance of the potential pathogenic fungus Alternaria significantly increased in the root endosphere of dodder-parasitized soybean. Furthermore, correlation analysis indicated that the fungal community in the root endosphere was susceptible to soil factors under dodder parasitism. Meanwhile, the content of soil total nitrogen was significantly and positively correlated with the relative abundance of Alternaria in the rhizosphere and endosphere of soybean. Metabolomic analysis indicated that dodder parasitism altered the accumulation of flavonoids in soybean roots, with significant upregulation of the contents of kaempferol and its downstream derivatives under different parasitism conditions. Taken together, this study highlighted the important role of dodder parasitism in shaping the fungal communities and secondary metabolites associated with soybean roots, providing new insights into the mechanisms of multiple interactions among dodder, soybean, microbial communities and the soil environment. Full article
(This article belongs to the Special Issue Metagenomic Analysis for Unveiling Agricultural Microbiome)
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19 pages, 7269 KiB  
Article
Combined Metabolome and Transcriptome Analysis Highlights the Host’s Influence on Cistanche deserticola Metabolite Accumulation
by Ru Feng, Hongshuang Wei, Rong Xu, Sai Liu, Jianhe Wei, Kun Guo, Haili Qiao and Changqing Xu
Int. J. Mol. Sci. 2023, 24(9), 7968; https://doi.org/10.3390/ijms24097968 - 27 Apr 2023
Cited by 3 | Viewed by 2747
Abstract
The medicinal plant Cistanche deserticola Ma (Orobanchaceae) is a holoparasitic angiosperm that takes life-essential materials from Haloxylon ammodendron (C. A. Mey.) Bunge (Amaranthaceae) roots. Although many experiments have been conducted to improve the quality of C. deserticola, little attention has been paid [...] Read more.
The medicinal plant Cistanche deserticola Ma (Orobanchaceae) is a holoparasitic angiosperm that takes life-essential materials from Haloxylon ammodendron (C. A. Mey.) Bunge (Amaranthaceae) roots. Although many experiments have been conducted to improve the quality of C. deserticola, little attention has been paid to the host’s influence on metabolite accumulation. In this study, transcriptomic and metabolomic analyses were performed to unveil the host’s role in C. deserticola’s metabolite accumulation, especially of phenylethanoid glycosides (PhGs). The results indicate that parasitism by C. deserticola causes significant changes in H. ammodendron roots in relation to metabolites and genes linked to phenylalanine metabolism, tryptophan metabolism and phenylpropanoid biosynthesis pathways, which provide precursors for PhGs. Correlation analysis of genes and metabolites further confirms that C. deserticola’s parasitism affects PhG biosynthesis in H. ammodendron roots. Then we found specific upregulation of glycosyltransferases in haustoria which connect the parasites and hosts. It was shown that C. deserticola absorbs PhG precursors from the host and that glycosylation takes place in the haustorium. We mainly discuss how the host resists C. deserticola parasitism and how this medicinal parasite exploits its unfavorable position and takes advantage of host-derived metabolites. Our study highlights that the status of the host plant affects not only the production but also the quality of Cistanches Herba, which provides a practical direction for medicinal plant cultivation. Full article
(This article belongs to the Special Issue Plant Genomics and Genome Editing 2.0)
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