Search Results (90)

Global climate change profoundly impacts the geographical distribution patterns and evolutionary dynamics of plants. As a vital ornamental and ecological shrub native to the temperate regions of the Northern Hemisphere, the wild germplasm resources of Weigela florida are facing dual threats from habitat fragmentation and climate warming. To elucidate the biogeographical mechanisms underlying the species’ responses to climate change and to formulate scientific conservation strategies, this study simulated the spatiotemporal dynamics of suitable habitats for W. florida across key historical periods spanning the Late Pliocene (~3.3 million years ago), Quaternary (~2.58 million years ago), the current period, and future climate scenarios using an optimized Maximum Entropy ecological niche model, and further tracked the migration trajectories of its spatial centroids. The results indicate that precipitation conditions, dry-season temperatures, and temperature seasonality are the dominant environmental factors limiting the distribution of wild W. florida. During the glacial–interglacial cycles, the area of its suitable habitat fluctuated significantly. Notably, the Korean Peninsula and the southern part of Northeast China maintained high habitat suitability across all geological historical periods, serving as long-term stable Quaternary glacial refugia for the species. Under various future climate scenarios, the total suitable habitat area of W. florida generally exhibits a shrinking trend, with habitat loss primarily concentrated at the western and southern edges of its distribution range. In the future, its spatial centroid shows a significant tendency to migrate towards higher latitudes (northeastward) to track suitable climatic niches. This study clarifies the macroscopic driving mechanisms behind the habitat dynamics of wild W. florida, providing critical spatial planning guidance for the refined evaluation and long-term sustainable utilization of its germplasm resources. Full article

Lodgepole pine (Pinus contorta Dougl.) exhibits pronounced morphological variation across its range, historically attributed to allopatric differentiation during the Wisconsin glaciation. However, whether genetic divergence aligns with morphological differentiation—a fundamental prediction of allopatric speciation theory—remains untested. We conducted a comprehensive phylogeographic analysis of chloroplast DNA (trnL intron and trnL/trnF spacer) and mitochondrial DNA (nad1 b/c intron) across 31 populations representing all four recognized subspecies to test hypotheses of refugial isolation and to evaluate the genetic basis of current taxonomic classification. Contrary to predictions of allopatric divergence, both organellar genomes showed striking genetic uniformity (π = 0.000178–0.000186; intersubspecific genetic distances: 1.06 × 10⁻⁴ to 3.96 × 10⁻⁴) with no phylogenetic structure corresponding to morphological boundaries. Significant negative neutrality test values (Tajima’s D = −2.26, p < 0.02; Fu and Li’s D* = −4.52, p < 0.02) suggest recent demographic expansion rather than equilibrium divergence. A distinctive 5 bp indel in coastal populations provides molecular evidence for a northern Pacific refugium, and its occurrence in interior populations is consistent with post-glacial pollen-mediated gene flow, though this directionality remains inferential pending nuclear genomic confirmation. These findings suggest that morphological divergence reflects rapid adaptive evolution in heterogeneous environments rather than deep phylogenetic divisions. This pattern exemplifies gene flow-selection balance, in which divergent selection maintains local adaptation despite extensive gene flow—supporting an ecotypic rather than a phylogenetic interpretation of intraspecific diversity. The persistence of morphological variation despite genetic homogeneity indicates strong selection on ecologically important traits, likely driven by variation in fire regimes, differential seed predation, and climate gradients. These results have critical implications for understanding adaptive evolution rates in widespread conifers and for developing conservation strategies that emphasize adaptive processes over taxonomic categories. Full article

Given that Acer sutchuenense Franch., an endangered maple endemic to China, severely threatened by habitat degradation and climate fluctuations, understanding its spatiotemporal dynamics is crucial for formulating conservation strategies. Herein, climatic, topographic and soil variables were employed to simulate historical, present, and future distribution patterns of A. sutchuenense using the optimized MaxEnt model. Our results indicated that Mean Temperature of Driest Quarter (Bio9) and Temperature Seasonality (Bio4) were the key environmental drivers. Since the Last Interglacial, A. sutchuenense had experienced a continuously reduction in its suitable area, though the mountains surrounding the Sichuan Basin functioned as vital glacial shelters. Although the potential suitable habitat was distributed in a ring shape, A. sutchuenense occurs only on the east and west sides of the Sichuan Basin, probably due to the terrain complexity and limited dispersal ability. In the future, A. sutchuenense faces a westward contraction and a migration lag behind climate velocity due to dispersal constraints. Overall, we recommend a multi-dimensional conservation framework that prioritizes in situ conservation in core refugia, urgently establishes ecological corridors to facilitate eastward migration under climate change, implements ex situ conservation through germplasm collection for vulnerable southwestern populations, and enhances long-term monitoring to ensure species persistence. Full article

Biological invasions are among the most pervasive threats to biodiversity, ecosystem functioning, and human well-being. Despite international policy efforts, the number of introductions continues to rise worldwide. Mountains, once considered resistant to biological invasions due to harsh climates and isolation, are becoming increasingly vulnerable. Human activities—tourism, infrastructure development, and land-use change—combined with climate warming, are creating new pathways and suitable conditions for non-native plants to spread upslope. Global evidence shows a rapid increase in alien species richness in mountain ecosystems, with some taxa shifting elevation by hundreds of meters. The problem of biological invasions becomes critical when considering that mountains harbor nearly a quarter of the planet’s total biodiversity. This issue is even more concerning in biodiversity hotspots such as the Mediterranean Basin, where mountains present an exceptionally high rate of endemism and have served as glacial refugia. The Pyrenees exemplify this dynamic: historically shaped by millennia of human activity, they now face growing pressures from tourism and climate change. Recent cataloging efforts reveal 771 alien taxa, surpassing figures for larger ranges like the Alps. These findings challenge long-held assumptions about mountain resilience and underscore the urgent need for coordinated monitoring, early detection, and management strategies—including citizen science initiatives—to mitigate ecological impacts and protect mountain biodiversity under accelerating global change. Full article

Understanding species distribution and environmental niches is crucial for conserving endangered taxa. The recent taxonomic split of the European freshwater mussels U. crassus and U. nanus into distinct species requires a reassessment of their distinct ecologies for conservation. This study uses species distribution models (SDMs) to define and compare the environmental niches and reconstruct the distributions across six past time periods, starting from the mid-Pliocene Warm Period (mPWP, ca. 3.205 Ma) to the present. Our results reveal significant environmental niche differentiation between the two species, with U. crassus occupying a broader environmental niche primarily influenced by annual mean temperature and precipitation in the warmest quarter. In contrast, U. nanus shows a narrower niche shaped by temperature seasonality, mean diurnal range, annual mean temperature, and precipitation seasonality. Paleodistribution models indicate that during the Last Glacial Maximum (LGM, ca. 21 ka), U. crassus persisted in multiple southern refugia, whereas U. nanus was restricted to a single western refugium. These contrasting glacial histories led to divergent post-glacial colonization routes, explaining their current genetic patterns and partially overlapping ranges. By identifying present environmental hotspots, this research provides an essential framework for developing targeted, species-specific conservation strategies for these freshwater mussels. Full article

As a contribution to our understanding of postglacial colonisation history of Anatolia, the Caucasus and the Middle East, we increased the existing phylogeographic coverage of the widespread Balkan short-tailed mouse Mus macedonicus. This added 92 new mitochondrial D-loop sequences (73 new haplotypes) from Anatolia and Thrace to generate a total dataset for the species of 221 sequences (174 haplotypes). We confirmed the previously described existence of a northern lineage (Anatolia, the southern Balkans, the Caucasus, Iran and Syria) and southern lineage (Israel and Lebanon) and generated Bayesian Skyline Plots to show demographic expansion after the Last Glacial Maximum (LGM) in the northern lineage but not the southern. We used haplotype networks to reveal haplotypes close to the ancestral condition of the northern lineage and to infer spread through its range, including colonisation of the southern Balkans. Our various phylogenetic reconstructions also show finer-scale geographic structuring. M. macedonicus likely occupied two separate glacial refugia in the vicinities of Israel and Lebanon (southern lineage) and Anatolia, Georgia and Iran (northern lineage) although further work is needed for precise localisation. M. macedonicus has become a well-worked model system for the phylogeography of a region deserving more attention. Full article

Zelkova schneideriana (Ulmaceae), an endemic relict species of the Tertiary in China, has experienced a sharp decline in population due to habitat fragmentation, poor natural regeneration, and anthropogenic disturbances. It is currently listed as a category II national key protected wild plant and categorized as Vulnerable by the International Union for Conservation of Nature (IUCN). To explore its response mechanisms to climate change, this study integrates 11 species distribution models (SDMs) to comprehensively predict its suitable habitat distribution patterns. Key environmental variables were identified as Bio06 (minimum temperature of the coldest month, 21.57%), Bio02 (mean diurnal range, 19.81%), Bio17 (precipitation of the driest quarter, 13.52%), Bio15 (precipitation seasonality, 8.32%), Bio07 (temperature annual range, 8.15%), Bio12 (annual precipitation, 6.58%), and elevation (6.57%), collectively contributing approximately 85%. Spatiotemporal analysis revealed that during historical glacial periods, suitable habitats were significantly restricted, and highly suitable zones were absent under extreme climatic conditions, suggesting the presence of potential glacial refugia. Under current climatic conditions, highly suitable habitats have expanded notably. However, under the high-emission scenario (SSP585) in the future, the suitable range is projected to shrink considerably, with a drastic reduction in highly suitable areas. Moreover, the suitability centroid is expected to shift markedly toward higher elevations in the northeast, indicating a potential adaptation strategy of Z. schneideriana toward mountainous regions in Hunan, Hubei, and Chongqing. These findings provide quantitative guidance for the formulation of targeted conservation strategies for Z. schneideriana and offer methodological insights for predicting suitable habitats and managing related relict plant species under the threat of climate change. Full article

Phylogeographic studies in Antarctica allow us to understand the demographic events of populations during glacial periods. In this study, the polyplacophoran Tonicina zschaui was analyzed in several localities on the West Antarctic Coast using the mitochondrial gene cytochrome oxidase subunit I (COI). Two genetically distinct populations were identified: one in the Weddell Sea and another across the Antarctic Peninsula and South Shetland Islands. Genetic diversity was generally low to moderate, suggesting limited gene flow and the influence of historical climatic events. Star-like haplotype networks and demographic analyses indicate population contractions during the Last Glaciation followed by postglacial expansion, especially in the Antarctic Peninsula–South Shetland Islands population. Several sites in this region were identified as potential glacial refugia, exhibiting proportionally elevated genetic diversity and exclusive haplotypes. Conversely, the small Weddell Sea population displayed signs of long-term isolation, limited expansion, and low diversity, likely due to stronger environmental constraints and genetic drift. Ocean currents such as the Antarctic Coastal Current, the Antarctic Peninsula Coastal Current and the Weddell Gyre appear to restrict larval dispersal, reinforcing genetic discontinuities. These findings support the hypothesis of glacial survival in localized refugia and postglacial recolonization, a pattern observed in other Antarctic marine invertebrates. Full article

During the Pleistocene, the successive ice ages prompted the southward expansion of the “Mammoth Steppe” ecosystem, a prevalent habitat that supported species adapted to cold environments such as the mammoth, woolly rhinoceros, and reindeer. Previously, the earliest evidence for such cold-adapted species in the Iberian Peninsula dated back to Marine Isotope Stage 6 (MIS 6, ~191–123 ka). This paper reports the discovery of a reindeer (Rangifer) tooth from Unit GIII of the Galería site at the Atapuerca-Trinchera site complex, dated to MIS 8 (~300–243 ka). This find is significant as it represents not only the oldest evidence of glacial fauna in the Iberian Peninsula but also the southernmost occurrence of reindeer in Europe of this age. The presence of Rangifer at this latitude (42°21′ N) during MIS 8 suggests that the glacial conditions affected the Iberian fauna earlier and with greater intensity than previously understood. Over the subsequent climatic cycles, cold-adapted species spread further south, reaching Madrid (40°20′) during the penultimate glacial period and the province of Granada (37°01′) during the last glacial maximum. The coexistence of human fossils and lithic artefacts within Units GII and GIII at Galería indicates that early humans also inhabited these glacial environments at Atapuerca. This study elaborates on the morphological and archaeological significance of the reindeer fossil, emphasizing its role in understanding the biogeographical patterns of glacial fauna and the adaptability of Middle Pleistocene human populations. Full article

In the traditional classification system of the Lauraceae family based on morphology and anatomy, the phylogenetic position of the genus Sassafras has long been controversial. Chloroplast (cp) evolution of Sassafras has not yet been illuminated. In this study, we first sequenced and assembled the complete cp genomes of Sassafras, and conducted the comparative cp genomics, phylogenomics, and divergence time estimation of this ecological and economic important genus. The whole length of cp genomes of the 10 Sassafras ranged from 151,970 bp to 154,011 bp with typical quadripartite structure, conserved gene arrangements and contents. Variations in length of cp were observed in the inverted repeat regions (IRs) and a relatively high usage frequency of codons ending with T/A was detected. Four hypervariable intergenic regions (ccsA-ndhD, trnH-psbA, rps15-ycf1, and petA-psbJ) and 672 cp microsatellites were identified for Sassafras. Phylogenetic analysis based on 106 cp genomes from 30 genera within the Lauraceae family demonstrated that Sassafras constituted a monophyletic clade and grouped a sister branch with the Cinnamomum sect. Camphora within the tribe Cinnamomeae. Divergence time between S. albidum and its East Asian siblings was estimated at the Middle Miocene (16.98 Mya), S. tzumu diverged from S. randaiense at the Pleistocene epoch (3.63 Mya). Combined with fossil evidence, our results further revealed the crucial role of the Bering Land Bridge and glacial refugia in the speciation and differentiation of Sassafras. Overall, our study clarified the evolution pattern of Sassafras cp genomes and elucidated the phylogenetic position and divergence time framework of Sassafras. Full article

Climatic oscillations in the Quaternary are altering the performance of angiosperms, while the species’ distribution is regarded as a macroscopic view of these spatial and temporal changes. Oaks (Quercus L.) are important tree models for estimating the abiotic impacts on the distribution of forest tree species. In this study, we modeled the past, present, and future suitable habitat for two varieties of deciduous oaks (Quercus serrata and Quercus serrata var. brevipetiolata), which are widely distributed in China and play dominant roles in the local forest ecosystem. We evaluated the importance of environmental factors in shaping the species’ distribution and identified the “wealthy” habitats in harsh conditions for the two varieties. The ecological niche models showed that the suitable areas for these two varieties are mainly concentrated in mountain ranges in central China, while Q. serrata var. brevipetiolata is also widely distributed in the middle-east mountain range. The mean temperature of the coldest quarter was identified as the critical factor in shaping the habitat availability for these two varieties. From the last glacial maximum (LGM) to the present, the potential distribution range of these two sibling species has obviously shifted northward and expanded from the inferred refugia. Under the optimistic (RCP2.6), moderate (RCP 4.5)-, and higher (RCP 6.0)-concentration greenhouse gas emissions scenarios, our simulations suggested that the total area of suitable habitats in the 2050s and 2070s will be wider than it is now for these two varieties of deciduous oaks, as the distribution range is shifting to higher latitudes; thus, low latitudes are more likely to face the risk of habitat losses. This study provides a case study on the response of forest tree species to climate changes in the north temperate and subtropical zones of East Asia and offers a basis for tree species’ protection and management in China. Full article

Perkinsiodendron macgregorii, an endangered Chinese endemic tree with high ornamental and ecological value, faces extinction threats due to its poor natural regeneration and habitat degradation. Despite the urgent need for its conservation, the genetic architecture and population differentiation mechanisms of this taxon remain poorly understood, hindering science-based protection strategies. We conducted comprehensive chloroplast genomic analyses of 134 individuals from 13 natural populations to inform science-based conservation. The chloroplast genome (158,538–158,641 bp) exhibited conserved quadripartite organization, with 113 functional genes and elevated GC contents in IR regions (42.99–43.02%). Population-level screening identified 741 SNPs and 678 indels, predominantly in non-coding regions (89.8%), with three distinct phylogeographic clades revealing north-to-south genetic stratification. The northern clade (Clade A) demonstrates the highest haplotype diversity and nucleotide diversity, followed by the southern clade (Clade C), while the central clade (Clade B) exhibits signals of genetic erosion (Tajima’s D > 3.43). Based on the genetic diversity distribution and phylogenetic tree of extant P. macgregorii, we inferred that the northern populations represent ancestral groups, while the Wuyi Mountains region and Nanling Mountains region served as glacial refugia. It is imperative to implement in situ conservation in these two regions. Additionally, ex situ conservation should involve collecting seed from representative populations across all three clades and establishing isolated cultivation lines for each clade. These findings establish a genomic framework for conserving endangered plants. Full article

The diverse topography and mild monsoon climate in East Asia are considered to be important drivers for the long-term ecological success of the Tertiary relict ‘living fossil’ plants during the glacial/interglacial cycles. Here we investigated the phylogeographic pattern and demographic history of a hamamelidaceous Tertiary relict ‘living fossil’ tree (Parrotia subaequalis) endemic to the subtropical forests of eastern China, employing molecular data and ecological niche modeling. In the long evolutionary history, P. subaequalis has accumulated a high haplotype diversity. Weak gene flow by seeds, geographical isolation, and heterogeneous habitats have led to a relatively high level of genetic differentiation in this species. The divergence time of two cpDNA lineages of P. subaequalis was dated to the late Miocene of the Tertiary period, and the diversification of haplotypes occurred in the Quaternary period. Paleo-distribution modeling suggested that P. subaequalis followed the pattern of ‘glacial expansion-interglacial compression’. The Dabie Mountain and Yellow Mountain in Anhui Province and the Tianmu Mountain and Simin Mountain in Zhejiang Province were inferred to be multiple glacial refugia of P. subaequalis in East Asia and have been proposed to be protected as ‘Management Units’. Collectively, our study offers insights into the plant evolution and adaptation of P. subaequalis and other Tertiary relict ‘living fossil’ trees endemic to East Asia refugia. Full article

Fourteen Ameletus species are recognized in the eastern Nearctic (south of the Artic zone), including six described as new. Keys to adult males and full-grown larvae are provided. Taxonomic decisions were based on morphologic and genetic evidence. Their justification is discussed in depth and four species groups are proposed. The vast majority of Ameletus encountered in the eastern Nearctic are members of one of three triploid, clonal parthenogenetic species, at least two of which are of hybrid origin. Bisexual progenitors of the parthenogens were inferred using a combination of mitochondrial and nuclear genetic markers. The parthenogens likely arose during the Late Pleistocene when glacial advances brought previously allopatric species/populations into contact, and as glaciers retreated the parthenogens rapidly expanded their range while the sexual lineages remained in presumed glacial refugia. Although parthenogenesis is relatively common in Ephemeroptera, these Ameletus represent the first known cases of polyploidy and hybrid origin. Full article

Moricandia moricandiodes is an endemic species found in the south and east of the Iberian Peninsula. Five subspecies have been recognized, and all exist as fragmented populations on limestones and marls with salt and gypsum intrusions under a continental Mediterranean climate, except for one of the subspecies, which inhabits semi-arid and hotter environments. In this study, we sampled populations covering the distribution area of the species and performed a population and phylogeographic study to assess the evolutionary history of populations and the taxonomic relationships of subspecies. ISSR markers, nrITS, and plastid sequences were used in the analyses. The results revealed that, in general, southern populations showed higher genetic diversity than northern populations, suggesting that the former are located in glacial refugia. Furthermore, we did not find clear differences between subspecies, except for M. moricandioides subsp. pseudofoetida, which showed exclusive haplotypes and an exclusive ribotype. Isolation and rapid divergence are discussed as the probable causes of differentiation, whereas bottlenecks and secondary contact between populations would explain the absence of differentiation among the other subspecies. Finally, we propose a few guidelines for the conservation of M. moricandioides. Full article