Search Results (2,329)

Phellodendron amurense Rupr. is a native tree species in China, well known for its significant medicinal value. Its pharmacological activity mainly derives from the abundant isoquinoline alkaloids in its bark. Berberine serves as the key compound underlying the multiple pharmacological effects of P. amurense and exhibits organ-specific accumulation. However, the genetic mechanisms governing this organ-specific accumulation remain unclear. Genes encoding O-methyltransferase (OMT) and cytochrome P450 (CYP) may play an important role in this regulatory process. In this study, by integrating transcriptomic and metabolomic data from the leaves and stems of P. amurense plantlets, we identified core candidate genes and transcription factors (TFs) that regulate the differential biosynthesis of berberine between these two organs. The results showed that 37 metabolites were significantly upregulated in stems, including main medicinal components such as berberine and jatrorrhizine, while 8497 genes were differentially expressed between leaves and stems. Among these, downstream genes in the berberine biosynthesis pathway, including OMTs and CYPs, were predominantly highly expressed in stems. A co-expression regulatory network identified some TFs such as PaBES1, PaWRKY12/13, PaNAC5, and PaMYB12 as the key nodes regulating the differential biosynthesis of berberine. Phylogenetic analysis classified the 97 PaOMTs into four subgroups. Core candidate genes such as PaOMT7 and PaOMT9 were contained in subgroup IV, potentially contributing to the specific modification of characteristic alkaloids in P. amurense. This study reveals the transcriptional regulatory networks underlying the organ-specific accumulation of berberine in P. amurense plantlets, providing key targets and theoretical support for the targeted improvement and development of elite medicinal varieties. Full article

Citrus bud mutants provide valuable genetic resources for breeding early-ripening cultivars with improved fruit quality. However, the physiological mechanisms underlying early ripening traits remain poorly understood. To elucidate the physiological basis for the early-ripening phenotype of the bud mutant ‘Longhuihong’ navel orange, fruit development was systematically monitored from 60 to 240 days after full bloom over two consecutive growing seasons, with the maternal cultivar ‘Newhall’ serving as a control. The results demonstrate that the precocity of ‘Longhuihong’ arises from the coordinated optimization of multiple fruit quality traits in this cultivar. The mutant exhibited enhanced fruit growth potential, with an average increase of 12.07–15.92% in single fruit weight. Peel coloration was significantly accelerated, as reflected by the faster coloring rate. Internal quality development followed a distinct pattern, characterized by high sugar accumulation, rapid acid degradation, and elevated vitamin C content. Notably, citric acid metabolism in ‘Longhuihong’ displayed a unique biphasic profile: substantial accumulation in the early stage, followed by rapid degradation in the later stage, which advanced the peak of the TSS/TA ratio by approximately 15 days. Principal component analysis further confirmed that the early ripening trait represents a systemic and integrated advancement in fruit size, sugar–acid balance, and peel pigmentation. Collectively, these findings provide a comprehensive understanding of the physiological mechanisms underlying precocity in ‘Longhuihong’ and offer key indices for breeding high-quality, early-ripening citrus cultivars. Full article

Actinidia eriantha is an endemic kiwifruit species in China with high nutritional value and breeding potential. As a typical dioecious fruit tree, most currently bred cultivars are female, while the development of male pollinizer cultivars remains insufficiently studied and reported. Through long-term collection and evaluation of wild germplasm resources, our research team bred a male cultivar ‘Ganxiong 1’ with both ornamental and pollination value. In this study, the phenological traits, floral characteristics, major biological traits, ploidy levels, and genetic diversity of ‘Ganxiong 1’ were systematically analyzed and compared with those of the commonly used pollinizer ‘Moshan 4’. The results showed that ‘Ganxiong 1’ exhibited stable genetic traits, with branch bleeding occurring in late February and flowering in early May, highly overlapping with the flowering period of most female A. eriantha cultivars. It produced bright red flowers arranged in false dichasial cymes, showing high ornamental value. The average number of anthers per flower was 140.24, and the number of pollen grains per anther reached 8.57 × 10⁴, with a pollen viability of 97.64% and a pollen tube length of 127.25 μm, indicating strong pollination potential. Ploidy and SSR analyses revealed that ‘Ganxiong 1’ is a diploid cultivar and is genetically distinct from previously reported A. eriantha cultivars at the DNA level. Regarding pollination effects, the fruit set rate, single fruit weight, seed number, SSC, and AsA content of ‘Ganlv 1’ fruits pollinated with ‘Ganxiong 1’ were significantly higher than those pollinated with ‘Moshan 4’, while the TA content was significantly lower than that of ‘Moshan 4’ pollination. In conclusion, ‘Ganxiong 1’ exhibits high stability and distinctiveness in phenological, morphological, cytological, and genetic characteristics. It can be considered a new ornamental and pollination dual-purpose cultivar of A. eriantha and provides an important parental resource for kiwifruit breeding programs. Full article

Gray mold caused by Botrytis cinerea poses a severe threat to tomato production. In this study, physiological, biochemical, transcriptomic, and proteomic analyses were integrated to characterize the dynamic responses of tomato ‘Ailsa Craig’ to B. cinerea infection. During B. cinerea infection, peroxidase (POD) activity showed a progressive increase, while catalase (CAT) activity was significantly upregulated at 24 hpi and remained stable through 48 hpi. Malondialdehyde (MDA) and hydrogen peroxide (H₂O₂) contents showed a delayed response, increasing significantly only at 48 hpi, whereas SOD activity exhibited a biphasic pattern. Transcriptome and proteome profiling identified 5824 differentially expressed genes and 124 differentially expressed proteins. Functional enrichment analysis highlighted defense-related pathways, including plant–pathogen interaction, flavonoid biosynthesis, and inositol phosphate metabolism. Notably, the chlorophyll a/b-binding protein SlLhcb13 exhibited post-transcriptional upregulation despite transcriptional suppression. Functional validation demonstrated that overexpression of SlLhcb13 enhanced resistance, whereas silencing increased susceptibility. These findings identify SlLhcb13 as a positive regulator linking photosynthesis to immunity and provide new insights into the defense mechanisms of tomato. Full article

Germplasm characterization can enhance the management and utilization of plant germplasm conserved in genebanks worldwide. This study was conducted to characterize 774 diverse soybean [Glycine max (L.) Merr.] accessions, mainly conserved at Plant Gene Resources of Canada (PGRC), through a laboratory seedling vigor test under polyethylene glycol (PEG)-induced dehydration stress and 72 selected accessions through a greenhouse salinity test. The PEG-based test identified 95 accessions that showed vigorous seedling growth in Petri dishes containing 20% (w/v) PEG 6000 solution. The salinity test revealed 58 accessions that produced total seed yields per plant ranging from 0.03 g to 1.47 g under severe salinity stress (EC_i 16.1 dS m⁻¹). Six accessions originating from five countries displayed higher salt tolerance than the Canadian salt-tolerant cultivar OAC Ayton, but the latter still had the highest seed yield. One unique accession, CN29789, originating from China and named ‘Hei Nung No.18’, consistently showed high tolerance to both dehydration and salinity stresses and had vigorous root growth under severe salinity stress. These findings are significant, as they not only provide useful germplasm for soybean genetic improvement for abiotic stress tolerance but also demonstrate the value of characterizing plant germplasm conserved in a genebank for better utilization. Full article

The use of fresh and dried figs has increased markedly in Tunisia in recent years, leading to a rise in public subsidies to support the further development of fig cultivation, especially in well-adapted production areas and with the adoption of innovative agronomic practices. This study aimed to carry out a comprehensive morphological and genetic characterization of fig germplasm from the Kesra region in north-western Tunisia, which is widely recognized for its long-standing tradition of fig production, in particular of the ‘Zidi’ cultivar. Field surveys and prospections enabled the identification of 26 distinct local fig cultivars, which were morphologically characterized and genotyped using 12 microsatellite (SSR) markers. All cultivars showed a specific allelic profile, including ‘Zidi’. The results provided valuable information for the conservation and management of Tunisian fig genetic resources. Moreover, the data will support the valorization of local fig production in the area through the establishment of the Protected Designation of Origin (PDO) ‘Fig of Kesra’, thereby contributing to the sustainable development of traditional orchards and the preservation of local agrobiodiversity. Full article

Understanding how medicinal plant distributions shift in response to climate change is essential for developing forward-looking conservation strategies. Cibotium barometz (L.) J. Sm., a tree fern from the family Dicksoniaceae, is not only ecologically significant but also holds considerable medicinal value. Despite its importance, wild populations of this species have been steadily declining due to ongoing habitat loss and unsustainable harvesting. To address this concern, we constructed a multi-model ensemble framework that integrated nine different algorithms, including Generalized Linear Models, various machine learning approaches, and a MaxEnt model optimized through ENMeval using a regularization multiplier of 2 and a feature class of LQH. Using this modeling framework, we simulated the habitat suitability dynamics of C. barometz under current climate conditions (1970–2000) and two future periods (2050s and 2090s) across four Shared Socioeconomic Pathways (SSP126, SSP245, SSP370, and SSP585). Our analysis identified water availability and low temperature stress as the primary factors limiting the species’ distribution. The suitable range for precipitation during the driest quarter extends from 3.25 to 640.20 mm, with optimal conditions occurring when precipitation reaches at least 96.84 mm. Annual precipitation suitable for the species lies between 74.58 and 4209.60 mm, and the most favorable range falls between 3834.10 and 4209.60 mm. While the minimum temperature of the coldest month can vary from −35.41 to 22.35 °C, optimal survival requires temperatures of 8.79 °C or higher. In addition, the species grows best within an annual temperature range of 16.25 to 27.92 °C, with an optimum around 20.47 °C. Projections based on the multi model ensemble suggest that future climate warming may lead to a southwestward shift in the centroid of suitable habitat for this species. By the 2090s, under the SSP245, SSP370, and SSP585 scenarios, the centroid shifts southwestward by 331.3 km, 335.1 km, and 180.2 km, respectively. Meanwhile, areas with high habitat suitability are expected to retreat toward mid-to-high elevation zones, especially in southeastern Yunnan, southern Guizhou, and western Guangxi. The effects of different emission pathways vary considerably; under the high-emission SSP585 scenario, the reduction in total suitable area is projected to be more severe and habitat fragmentation more extensive compared to the low-emission SSP126 pathway. In contrast, implementing ambitious emissions reduction measures could play a key role in supporting the long-term stability of C. barometz populations. This study clarifies how this species responds to climate change and the spatial strategies it may adopt, providing a scientific basis and spatial references for conserving its germplasm resources, restoring its habitats, and advancing its sustainable use. Full article

Wild orchid populations are declining with intensified habitat fragmentation posing severe challenges to germplasm conservation. As an important ornamental Orchidaceae species, Cymbidium ensifolium has abundant germplasm resources and frequent natural and artificial hybridization. Long-term natural evolution and anthropogenic disturbance have led to complex genetic backgrounds and ambiguous phylogenetic relationships hindering accurate germplasm identification, elite resource excavation, and selective breeding. As a distinctive variety, Cymbidium ensifolium var. susin has great breeding potential. Clarifying its phenotypic and genetic characteristics is crucial for accelerating breeding progress. In this study, phenotypic determination, Hyper-seq reduced-representation genome sequencing, SNP/InDel genotyping, genetic diversity analysis, and core collection construction were used to evaluate the genetic diversity, population differentiation, and core germplasm screening of 13 Cymbidium ensifolium var. susin accessions. The results showed significant phenotypic differences and rich genetic variation among tested materials. Based on highly weighted floral traits, accessions were divided into three major phenotypic groups. At the molecular level, 963,239 SNP and 182,399 InDel loci were identified and mainly distributed in intergenic regions, followed by introns and exons. A phylogenetic tree was constructed from SNP loci combined with principal component and phenotypic clustering analyses. This study preliminarily clarified the genetic structure of pure-heart Cymbidium ensifolium var. susin, showing a distinct geographical pattern: “high consistency in Fujian and Guangdong; strong differentiation in Southwest China; and a transitional gradient in Central China”. Meanwhile, six core germplasm accessions were screened in this study, which provides a solid theoretical basis and material support for the conservation of pure-heart Cymbidium ensifolium var. susin accessions, variety improvement, hybrid parent selection, and molecular marker-assisted breeding. This is of great significance for promoting the innovation of Chinese orchid germplasm resources and the high-quality development of the industry. Full article

Tree architecture is a critical determinant of plant performance, light capture, biomechanical stability, and resource allocation. However, the multidimensional functional trait space and multiscale allometric scaling mechanisms underlying different architectural types in Malus remain poorly understood. This study investigates the multidimensional functional trait space and multiscale allometric scaling relationships among three typical architectural types (weeping, upright, and spreading) in Malus. A total of 206 germplasm accessions were analyzed by integrating nine core functional traits spanning macro-architectural, branch biomechanical, and leaf economic dimensions. Principal component analysis revealed that architectural differentiation is primarily driven by macro-architectural and branch biomechanical traits, alongside coordinated contributions from leaf economic traits. Functional diversity analysis indicated that the upright and spreading types exhibited higher functional richness, while the weeping type displayed the highest functional divergence but minimal or no functional overlap with the upright and spreading type, reflecting strong niche specialization under artificial selection. Multiscale allometric analyses demonstrated significant divergence in resource allocation strategies across hierarchical levels. At the whole-tree level, architectural types differed markedly in height–diameter and height–crown scaling relationships. At the branch level, conserved positive allometric scaling was observed, with the weeping type showing higher intercepts indicative of increased mechanical investment. At the leaf level, consistent negative allometry between petiole length and leaf area suggested optimized resource allocation for light capture. These pronounced differences suggest distinct ecological adaptation strategies: the weeping type prioritizes biomechanical compensation for pendulous branches and optimized light capture in loose canopies; the upright type emphasizes vertical light competition and mechanical compactness; the spreading type balances lateral expansion and spatial filling efficiency, reflecting differentiated resource allocation patterns shaped by artificial selection. Overall, this study reveals that tree architecture in Malus is shaped by coordinated trait interactions across multiple scales, leading to distinct ecological strategies and resource allocation patterns. These findings provide new insights into the structure–function co-evolution of woody plants and offer a theoretical framework for functional trait-assisted breeding of ornamental tree architectures. Full article

This study presents a genetic characterization and population structure analysis of an ancient Algerian collection of Citrus fruits, dating back to the colonial period of the early 1900s. Genetic diversity was assessed using eight Simple Sequence Repeat (SSR) markers, with the objective of accurately identifying their varieties and elucidating their genetic relationships, particularly in the absence of passport data and documented origins. A total of 96 accessions were analyzed. Instances of homonymy, synonymy, and labeling errors were detected. Observed heterozygosity ranged from 0.451 to 0.715, with a mean value of 0.54, while polymorphic information content (PIC) values varied between 0.225 (CCSM18) and 0.635 (TAA41). The genetic relationship patterns among the different Citrus groups were consistent with their botanical classification. Structureanalysis suggested differentiation between the pomelo–orange cluster and the lemon group, as well as between the mandarin and clementine groups. These results suggest thatAlgerian Citrus germplasm may represent a valuable and relatively underexplored resource for breeding programs, highlighting the importance of its proper characterization and conservation to prevent genetic erosion. Full article

Tamarindus indica L. is a species of tree with high economic value. However, research on its associated bacterial communities is limited, and no microbial fertilizer has yet been developed specifically for tamarind. In this study, we selected 20 geographical provenances of tamarind as experimental materials, evaluated their germplasm resources, and investigated the correlation between plant traits and associated bacterial communities under grafting conditions. Provenances YM2 and BS21 produced the largest fruits, while all physiological indices showed significant variability among the tested accessions. Microbial samples from the phyllosphere and rhizosphere were collected from these 20 provenances, and 16S rRNA gene sequencing was conducted to compare microbial communities. The differences in rhizosphere microbiota among different samples were more significant than those in phyllosphere microbiota; subsequently, an in-depth investigation was conducted on the relationships between rhizosphere bacterial communities and various traits under these grafting conditions. Through correlation analysis, significant correlations were identified between some microbial phyla and the traits of tamarind under these grafting conditions. Under the current grafting conditions, variations in the rhizosphere microbiome were associated with tamarind provenances. However, due to the constraints of the experimental design, the potential influences of rootstock genotypes and scion–rootstock signal transduction could not be excluded. Nevertheless, through the unification of rootstock sources and the design of correlation analysis, this study has initially verified the dominant association between scion provenances and microbial communities. Full article

Macrobrachium nipponense is one of the major economic species in freshwater aquaculture in China. As an important component of aquaculture ecosystem, microorganisms participate in key processes such as material cycling and water quality regulation, exerting significant impacts on the cultured organisms. In this study, high-throughput sequencing of the 16S rRNA, 18S rRNA, and ITS regions was employed to comparatively analyze the characteristics of microbial communities before and during the cultivation period, combined with correlation analysis of environmental factors. The results showed that the dominant microbial groups in the prawn pond water were Proteobacteria, Cyanobacteria, Ascomycota, Basidiomycota, Chlorophyta, and Arthropoda. The microbial community structure differed significantly between the pond water during the culture period and the pre-culture external river baseline: manifested as an increase in the relative abundances of Cyanobacteria, Chytridiomycota, and zooplankton, and a decrease in the abundances of Ascomycota, Basidiomycota, and Chlorophyta. Analysis of LEfSe revealed that the low-nitrogen pond was enriched with taxa such as Muribaculaceae; the high-nitrogen pond was enriched with taxa such as Cyanobium_PCC-6307; and the control pond was enriched with taxa such as CL500-29_marine_group. Functional prediction indicated that heterotrophic metabolism-related functions dominated the microbial communities. The abundance of fungal pathogens was significantly higher in the low-nitrogen group, while potential pathogenic bacteria were enriched in the high-nitrogen group. Ammonia nitrogen is a core environmental factor associated with differences in microbial community structure. The findings of this study can provide theoretical references and data support for water quality optimization and the construction of healthy aquaculture models in freshwater shrimp and crab farming waters. Full article

Oil and gas drilling waste drilling fluid is a complex alkaline mixture that poses risks to plants and soil ecosystems during transportation and disposal due to potential leakage. This study investigates the effects of waste drilling fluid on the growth of Trifolium pratense (L.) and Astragalus sinicus (L.) and on the soil ecosystem, aiming to provide a theoretical reference for ecological restoration of oil and gas field sites. Four gradients of waste drilling fluid stress were established by mixing 0, 50, 100, and 150 mL of waste drilling fluid into the substrate, with 0 mL serving as the control. Seed germination, morphological development, physiological, and biochemical indices of the two leguminous plants, as well as soil nutrients and enzyme activities, were analyzed, followed by a comprehensive evaluation. Waste drilling fluid stress inhibited the growth of both leguminous plants. Their physiological and biochemical parameters, such as antioxidant enzyme activities and osmotic regulatory substances, exhibited a gradually increasing trend with increasing waste drilling fluid concentration. Concurrently, waste drilling fluid stress reduced soil nutrient availability and decreased soil enzyme activities. Notably, soil nutrient content increased after planting compared to the original soil without plants. Planting these two leguminous plants can effectively alleviate the negative impacts of waste drilling fluid stress, thereby indirectly contributing to soil remediation. Full article

The biochemical diversity among tea plant (Camellia sinensis) cultivars serves as the core material basis associated with tea quality and is of great significance for the innovation of tea germplasm resources and the genetic improvement of tea varieties. Here, we systematically analyzed 16 biochemical components, 7 mineral elements, and water-soluble fluoride (WSF) in 65 tea cultivars using multivariate analysis. These cultivars were grouped into high-component, high-epigallocatechin (EGC), low-component, and balanced-quality clusters. Significant variation was observed in quality-related parameters, including tea polyphenols, catechins, and amino acids and related quality indices. Mineral elements were significantly correlated with quality components, with potassium and boron showing significant correlation with the accumulation of these components. WSF content exhibited a pronounced cultivar-dependent variation, with more than 72% of cultivars containing less than 100 mg·kg⁻¹. The balanced-quality cluster exhibited broad processing adaptability, making it suitable for producing various tea types. The high-EGC cluster is ideal for developing specialty functional teas. The high-component cluster offers core parental material for breeding cultivars high in tea polyphenols and epigallocatechin gallate. This study provides a scientific basis for the screening and utilization of tea germplasm resources and the development of new, high-quality, and safe tea varieties. Full article

Enhancing technical efficiency in food legume production is essential, since the scope for expanding factor inputs is limited under tightening resource constraints. Higher technical efficiency improves resource allocation, ensures food supply stability, and boosts farm income. To strengthen production performance, using survey data from 817 food legume farm households in five major producing regions of China in 2024, this study employs a two-stage DEA-Tobit model to measure farmers’ technical efficiency in food legume production and to empirically identify its driving factors. The results indicate that: (1) technical efficiency in food legume production shows pronounced regional disparities and substantial within-region heterogeneity; (2) technical efficiency in food legume production improves over time, yet substantial space for efficiency gains remains relative to other staple crops; (3) farm households located at different stages of returns to production inputs show distinct production and management patterns. (4) human capital accumulation, full-time farming status, and participation in food legume cooperative economic organizations exert significant positive effects on technical efficiency. Meanwhile, planting scale exhibits a significant inverted U-shaped relationship with technical efficiency. The findings provide household-level empirical evidence to explain disparities in technical efficiency and identify pathways for improving food legume production. Full article