Search Results (141)

The fungal family Mortierellaceae represents ubiquitous and ecologically significant components of soil ecosystems across terrestrial habitats. Through an integrative taxonomic approach combining multi-locus phylogenetic analyses (ITS, LSU, SSU rDNA, RPB1, and Act) with detailed morphological examinations of rhizosphere soil isolates, four novel species within this family were proposed. This study elucidates the morphological distinctions of novel species from allied species and the phylogenetic relationships among the novel and existing species within the family. Linnemannia rotunda sp. nov. (closely related to L. longigemmata) is distinguished by its globose sporangia and sporangiospores. Mortierella acuta sp. nov. (clustering with M. yunnanensis) is characterized by spiky collarettes. Mortierella oedema sp. nov. (a sister to M. macrocystis) exhibits distinctive ampulliform swellings. Mortierella tibetensis sp. nov. (clustering with M. parvispora) is named for its geographic origin in Tibet. As the eighth installment in a systematic investigation of early diverging fungal groups in China, this work expands the global taxonomic inventory of Mortierellaceae to 148 species, underscoring the ongoing discovery of cryptic biodiversity within this ecologically pivotal group. Full article

Rice yields are expected to drop significantly due to the increasing spread of rice pests. Detecting rice pests in a timely manner using deep learning models has become a prevalent approach for rapid pest control. However, current datasets related to rice pests often suffer from limited sample sizes or poorly annotated labels, which compromises the training accuracy of deep learning models. Building upon the large-scale IP102 dataset, this study refines the rice pest segment of IP102 by separating adult specimens and larva specimens, acquiring additional pest images via web crawler techniques, and re-annotating all adult samples. The pest category names, originally in English, are replaced with the Latin scientific names of the corresponding families to improve both clarity and scientific accuracy. The resulting dataset, designated RP11, includes 11 adult categories with 4559 images and 7 larval categories with 2467 images. All annotations follow a labeling format compatible with YOLO model training. The sample count in RP11 is approximately four times that of the rice-specific subset in IP102. In this work, YOLOv11 was employed to evaluate RP11’s performance, with IP102 serving as a comparison dataset. The results demonstrate that RP11 outperforms IP102 in precision (83.0% vs. 58.9%), recall (79.7% vs. 63.1%), F1-score (81.3% vs. 60.9%), mAP50 (87.2% vs. 62.0%), and mAP50–95 (73.3% vs. 37.9%). Full article

The name ‘Malvasia’ and its various spellings has historically been associated with a type of sweet and/or aromatic wine. However, a definitive association with a specific grape variety remains unconfirmed. In fact, up to 413 different grape variety names (cultivar name (synonym name) and/or first name) are related to the term “Malvasia”. The question arises: are all of these truly Malvasia? To answer this question, our research group presents a hypothesis. We worked with 43 genetic profiles that various scientific groups have published over decades and that are stored in the world’s largest grape database, the Vitis International Variety Catalogue (VIVC). The known molecular profiles were obtained using the SSR (Simple Sequence Repeats) or microsatellite technique. Various population structure programs were applied, information on the possible origin or area where each of the varieties was mostly grown was used, and historical information was used to explain the results obtained. Therefore, it can be concluded that the current varieties best positioned to define the concept of grape and/or wine variety “Malvasia” would be (1) Malvasia Dubrovacka, Malvasia bianca lunga, and Malvasia del Cilento, by genetic proximity; (2) Malvasia volcanica, Malvasia babosa, Malvasia nera di Basilicata, Malvasia nera di Brindisi, Vitovska, Pelena, Prunesta (false), and Lagorthi, by crosses; and (3) Malvasia di Sardegna Rosada, by mutation. The rest of the candidate varieties to be part of the ‘Malvasia’ family are dismissed because they result from crosses with members of the Muscat family or crosses with other varieties (known or unknown) that, in any case, are not related historically, genetically, or geographically (with the exception of Malvasia istriana and Malvasia Župska) to the hypothetical members of the ‘Malvasia’ family. Full article

Image steganalysis methods aim at detecting whether there exist hidden messages in images. Deep learning (DL) models have been proposed to enhance steganography detection. These models occupy a large amount of memory and, for this reason, should be optimized when the scenario involves resource-limited devices and systems. This work addresses different deep learning model optimization strategies, namely model pruning, quantization and weight clustering, applied to a deep learning model that presents competitive accuracy results in image steganalysis and belongs to the family of DL models with smaller memory requirements. The results show that the use of optimization schemes can lead to similar or even better accuracy compared to the original model (without the use of optimization schemes), while requiring less memory to store the model. Different scenarios are simulated for each optimization technique, and, finally, quantization is combined with pruning. For dynamic range quantization (DRQ), we achieve models that can save approximately 72% of storage. For FP16 quantization, we obtain better accuracy results and a model with approximately 50% less memory consumption. By applying weight clustering, we also achieve compressed models that can save more than 72% of storage space and lead to better accuracy for some scenarios. Using the combination of pruning and quantization, smaller models in terms of memory requirements are obtained. Full article

The introduction of alien species may pose an enormous threat to indigenous flora and fauna. Among introduced animals, probably the most destructive to the natural environment are mammals. This is true at least in regard to the Afrotropical Region (sub-Saharan Africa). This review attempts to summarize our knowledge on alien mammals in this region and their impact on indigenous vertebrate fauna. This review includes 56 mammal species, belonging to 20 families, introduced to sub-Saharan Africa over the last 2000 years. Most are representatives of the following orders: Artiodactyla, Carnivora, and Primates. Most species introduced to sub-Saharan Africa originated from the Oriental (n = 20) and Palearctic (n = 19) regions. Two species, Mus musculus and Rattus rattus, were introduced before 1400 (probably as early as 800 AD), while three others were introduced between 1401 and 1700. The first half of the 17th century saw the highest number (n = 10) of introduced species. Between 1651 and 1850, only two species were introduced; in the following 175 years (1851–2025), as many as 24 species were introduced. Ten of the introduced mammal species, namely Sus scrofa, Capra hircus, Rattus rattus, R. norvegicus, Mus musculus, Felis catus, Canis familiaris, Viverricula indica, Urva auropunctata, and Maccaca fuscicularis, have become invasive species. A total of 39 mammal species were relocated (mainly for hunting purposes) within sub-Saharan Africa. Most of them were representatives of the family Bovidae (76.9%). Relocations are not considered introductions. Based on published records of the impacts of alien mammals on the vertebrate fauna of sub-Saharan Africa, the following mechanisms may be distinguished: predation, competition, hybridization, transmission of diseases and parasites, and habitat destruction (grazing, herbivory, browsing). Most vertebrate species (79.4%) were affected through direct predation, predation and habitat destruction (7.1%), or predation and competition (1.4%). Alien mammals have caused habitat destruction for only 10 species (7.1%). Other effects (competition and genetic pollution) were marginal (3.5%). At least 144 vertebrate species, representing 52 families, have been affected by alien mammals in sub-Saharan Africa: 3 amphibians, 23 reptiles, 89 birds, and 29 mammals. As a result of mammal introductions, 65 species in sub-Saharan Africa have become globally extinct, 45 are considered threatened (listed in the RDB), and 31 other species are in decline, although not included in the RDB. Most extinct birds were affected by introduced rats, mice, feral cats, and dogs. In continental Africa, only seven vertebrate species have been negatively affected by alien mammals. All other affected vertebrates occur on islands. An especially high rate of extinction has been recorded in the Mascarene Islands. In comparison with alien birds in sub-Saharan Africa, the number of introduced mammal species is much lower, but their negative impact on vertebrate fauna is significantly greater. Full article

A taxonomic revision of the family Apocynaceae (Gentianales) from Tunisia is presented. Field surveys carried out during the last two decades allowed us to identify new records at the national level, i.e., Asclepias curassavica, Carissa macrocarpa, Cascabela thevetia, and Cryptostegia grandiflora (the latter three are new to the non-native Mediterranean and North African woody vascular flora). The genus Asclepias is new at a national level, whereas Carissa, Cascabela, and Cryptostegia are recorded here for the first time in the Mediterranean basin. Information is provided about nomenclature (accepted names, main synonyms, and types), morphology, chromosome number, chorology, occurrence in Tunisia, habitat, phenology, and taxonomic annotations, and original photos are prepared. Diagnostic keys relating to generic and species ranks are also given. Using typificitions, the identity of the Linnaean names Cynanchum erectum and C. monspeliensis, Pourret’s Vinca difformis, and Roxburgh’s Nerium grandiflorum is discussed. Full article

The Cordycipitaceae family of insecticidal fungi is widely distributed in nature, is the most complex in the order Hypocreales (Ascomycota), with members displaying a diversity of morphological characteristics and insect host ranges. Based on Bayesian evolutionary analysis of five genomic loci(the small subunit of ribosomal RNA (SSU) gene, the large subunit of ribosomal RNA (LSU) gene, the translation elongation factor 1-α (tef1-α) gene, the largest subunit of RNA polymerase II (rpb1), and the second largest subunit of RNA polymerase II (rpb2), we inferred the divergence times for members of the Cordycipitaceae, improving the internal phylogeny of this fungal family. Molecular clock analyses indicate that the ancestor of Akanthomyces sensu lato occurred in the Paleogene period (34.57 Mya, 95% HPD: 31.41–37.67 Mya), and that most species appeared in the Neogene period. The historical biogeography of Akanthomyces sensu lato was reconstructed using reconstructing ancestral state in phylogenies (RASP) analysis, indicating that it most likely originated in Asia. Combined morphological characterization and phylogenetic analyses were used to identify and taxonomically place five species within Cordycipitaceae. These include the following: (i) two new species, namely Akanthomyces baishanensis sp. nov. and Samsoniella sanmingense sp. nov., (ii) a new record species isolated from infected Lepidopteran host, Blackwellomyces lateris, (iii) a new record species in the genus Niveomyces, with sporothrix-like asexual morphs, namely N. multisynnematus, isolated from dipteran insects (flies), and (iv) a known species of the (hyper-) mycoparasite, Liangia sinensis, isolated from the fungus Ophiocordyceps globiceps (Ophiocordycipitaceae) growing on a dipteran host. Our data provide a significant addition to the diversity, ecology, and evolutionary aspects of the Cordycipitaceae. Full article

This research focuses on biological systems with sexual reproduction in which female and male individuals coexist together, forming female–male couples with the purpose of procreation. The couples can originate new females and males according to a certain probability law. Consequently, in this type of biological systems, two biological phases are involved: a mating phase in which the couples are formed, and a reproduction phase in which the couples, independently of the others, originate new offspring of both sexes. Due to several environmental factors of a random nature, these phases usually develop over time in a non-predictable (random) environment, frequently influenced by the numbers of females and males in the population and by the number of couples participating in the reproduction phase. In order to investigate the probabilistic evolution of these biological systems, in previous papers, by using a methodology based on branching processes, we had introduced a new class of two-sex mathematical models. Some probabilistic properties and limiting results were then established. Additionally, under a non-parametric statistical framework, namely, not assuming to have known the functional form of the offspring law, estimates for the main parameters affecting the reproduction phase were determined. We now continue this research line focusing the attention on the estimation of such reproductive parameters under a parametric statistical setting. In fact, we consider offspring probability laws belonging to the family of bivariate power series distributions. This general family includes the main probability distributions used to describe the offspring dynamic in biological populations with sexual reproduction. Under this parametric context, we propose accurate estimates for the parameters involved in the reproduction phase. With the aim of assessing the quality of the proposed estimates, we also determined optimal credibility intervals. For these purposes, we apply the Bayesian estimation methodology. As an illustration of the methodology developed, we present a simulated study about the demographic dynamics of Labord’s chameleon populations, where a sensitivity analysis on the prior density is included. Full article

Cooperative MIMO communication systems play an important role in the development of future sixth-generation (6G) wireless systems incorporating new technologies such as massive MIMO relay systems, dual-polarized antenna arrays, millimeter-wave communications, and, more recently, communications assisted using intelligent reflecting surfaces (IRSs), and unmanned aerial vehicles (UAVs). In a companion paper, we provided an overview of cooperative communication systems from a tensor modeling perspective. The objective of the present paper is to provide a comprehensive tutorial on semi-blind receivers for MIMO one-way two-hop relay systems, allowing the joint estimation of transmitted symbols and individual communication channels with only a few pilot symbols. After a reminder of some tensor prerequisites, we present an overview of tensor models, with a detailed, unified, and original description of two classes of tensor decomposition frequently used in the design of relay systems, namely nested CPD/PARAFAC and nested Tucker decomposition (TD). Some new variants of nested models are introduced. Uniqueness and identifiability conditions, depending on the algorithm used to estimate the parameters of these models, are established. Two families of algorithms are presented: iterative algorithms based on alternating least squares (ALS) and closed-form solutions using Khatri–Rao and Kronecker factorization methods, which consist of SVD-based rank-one matrix or tensor approximations. In a second part of the paper, the overview of cooperative communication systems is completed before presenting several two-hop relay systems using different codings and configurations in terms of relaying protocol (AF/DF) and channel modeling. The aim of this presentation is firstly to show how these choices lead to different nested tensor models for the signals received at destination. Then, by capitalizing on these models and their correspondence with the generic models studied in the first part, we derive semi-blind receivers to jointly estimate the transmitted symbols and the individual communication channels for each relay system considered. In a third part, extensive Monte Carlo simulation results are presented to compare the performance of relay systems and associated semi-blind receivers in terms of the symbol error rate (SER) and channel estimate normalized mean-square error (NMSE). Their computation time is also compared. Finally, some perspectives are drawn for future research work. Full article

The genus Neocaridina, originating from East Asia and representing a small-size landlocked shrimp group of the family Atyidae, is an important group of ornamental shrimps and plays significant ecological roles in their natural habitats. Owing to the considerable variability of the taxonomic characters it employed, Neocaridina is constantly under revision, and the validation of several species is currently questionable. In the present study, several Neocaridina shrimps were collected from the Baiyangdian drainage area. Through morphological examination, they exhibited delicately diagnostical differences in the dactyli of the third pereiopod and the endopod of the first and second pleopod and were classified into morph A, morph B and morph C. According to the literature description, morph A and morph C were identified as N. denticulata denticulata and N. denticulata sinensis, respectively. Among them, morph B presents an intermediate state between morph A and morph C. Subsequently, we determined the mitogenomes of morph A, morph B and morph C. Based on the morphological characteristics, genetic variation and phylogenetic tree, we contend that N. davidi, N. d. denticulata, N. d. sinensis and N. heteropoda should belong to the same species, and we propose retaining the name N. denticulata. The reconstructed mitogenomic phylogeny indicated that the monophyly of several genera within Atyidae has been challenged, suggesting that the established classification of Atyidae requires substantial taxonomic revision at all taxonomic levels. Furthermore, the tree’s topologies supported Atyidae at a deeper base within Caridea. More comprehensive taxon sampling is still needed to resolve the explicit internal relationships among Caridea. Full article

Background: Glucose 6 phosphate dehydrogenase (G6PD) is a rate-limiting enzyme of the pentose phosphate pathway. The loss of G6PD activity in red blood cells increases the risk of acute haemolytic anaemia under oxidative stress induced by infections, some medications, or fava beans. More than 200 single missense mutations are known in the G6PD gene. A 41-year-old woman with a family history of favism coming from the Basilicata region (Italy) was evaluated at our hospital for G6PD abnormalities. Methods: DNA was extracted from a peripheral blood sample and genotyped for the most common G6PD pathogenic variants (PVs). Positive results obtained by Restriction Fragment Length Polymorphism (RFLP), as per practice in our laboratory, were then reconfirmed in Sanger sequencing. Results: RFLP analysis highlighted a variant compatible with the G6PD Cassano variant. Confirmatory testing by Sanger unexpectedly identified a novel variant: c.1357G>A, p.(Val453Met) (NM_001360016.2); the same variant was found in the patient’s mother. In silico models predicted a deleterious effect of this variant at the protein level. The novel G6PD variant was named “G6PD Potenza” on the basis of the patient’s regional origin. Conclusions: This case describes a novel G6PD variant. It also highlights how the Sanger sequencing technique still represents an indispensable confirmatory standard method for variants that could be misinterpreted by only using a “first-level” approach, such as the RFLP. We stress that the evaluation of clinical manifestations in G6PD-deficient patients is of primary importance for the classification of each new G6PD mutation, in agreement with the new WHO guidelines. Full article

The discovery of hypertrophic cardiomyopathy (HCM) dates back to 1958, when the pathologist Donald Teare of the St. George’s Hospital in London performed autopsies in eight cases with asymmetric hypertrophy of the ventricular septum and bizarre disorganization (disarray) at histology, first interpreted as hamartoma. Seven had died suddenly. The cardiac specimens were cut along the long axis, similar to the 2D echo. In the same year, at the National Institute of Health U.S.A., Eugene Braunwald, a hemodynamist, and Andrew Glenn Morrow, a cardiac surgeon, clinically faced a patient with an apparently similar morbid entity, with a systolic murmur and subaortic valve gradient. “Discrete” subaortic stenosis was postulated. However, at surgery, Dr. Morrow observed only hypertrophy and performed myectomy to relieve the obstruction. This first Braunwald–Morrow patient underwent a successful cardiac transplant later at the disease end stage. The same Dr. Morrow was found to be affected by the familial HCM and died suddenly in 1992. The term “functional subaortic stenosis” was used in 1959 and “idiopathic hypertrophic subaortic stenosis” in 1960. Years before, in 1957, Lord Brock, a cardiac surgeon at the Guy’s Hospital in London, during alleged aortic valve surgery in extracorporeal circulation, did not find any valvular or discrete subaortic stenoses. In 1980, John F. Goodwin of the Westminster Hospital in London, the head of an international WHO committee, put forward the first classification of heart muscle diseases, introducing the term cardiomyopathy (dilated, hypertrophic, and endomyocardial restrictive). In 1995, the WHO classification was revisited, with the addition of two new entities, namely arrhythmogenic and purely myocardial restrictive, the latter a paradox of a small heart accounting for severe congestive heart failure by ventricular diastolic impairment. A familial occurrence was noticed earlier in HCM and published by Teare and Goodwin in 1960. In 1989–1990, the same family underwent molecular genetics investigation by the Seidman team in Boston, and a missense mutation of the β-cardiac myosin heavy chain in chromosome 14 was found. Thus, 21 years elapsed from HCM gross discovery to molecular discoveries. The same original family was the source of both the gross and genetic explanations of HCM, which is now named sarcomere disease. Restrictive cardiomyopathy, characterized grossly without hypertrophy and histologically by myocardial disarray, was found to also have a sarcomeric genetic mutation, labeled “HCM without hypertrophy”. Sarcomere missense mutations have also been reported in dilated cardiomyopathy (DCM) and non-compaction cardiomyopathy. Moreover, sarcomeric gene defects have been detected in some DNA non-coding regions of HCM patients. The same mutation in the family may express different phenotypes (HCM, DCM, and RCM). Large ischemic scars have been reported by pathologists and are nowadays easily detectable in vivo by cardiac magnetic resonance with gadolinium. The ischemic arrhythmic substrate enhances the risk of sudden death. Full article

Background: Dysmenorrhea is a common condition that may have negative effects on social life, couples’ relationships and professional activities. The objectives of this study were to evaluate the prevalence, risk factors and characteristics of dysmenorrhea and its impact on patients’ quality of life using a specific self-questionnaire named “DysmenQoL questionnaire”. We also checked the validity and reliability of this questionnaire in our population. Methods: We conducted a cross-sectional study that included 504 participants of reproductive age between 18 and 45 years of age. The data were collected with an original form divided into three sections. The last section (DysmenQoL questionnaire) included 20 statements scored from 1 (“never”) to 5 (“every time”) that evaluates the effects of menstrual pain on health and feelings, daily activities, relationships and professional activity. We calculated the sum of the scores for each statement and we called it the “DysmenQoL score”. Results: The prevalence of dysmenorrhea was 83.7%. The presence of dysmenorrhea was statistically significant associated with the degree of menstrual bleeding (p = 0.017), the presence of infertility (p = 0.034) and dyspareunia (p = 0.002), but also with the presence of premenstrual syndrome and a family history of dysmenorrhea (p < 0.001). Among the participants with dysmenorrhea, 73.9% considered that this symptom affected their quality of life, and this was correlated with pain intensity and the DysmenQoL score (p < 0.001). A significant difference regarding the DysmenQoL score depending on the pain intensity, frequency and duration of dysmenorrhea and the methods used to reduce the pain was observed. Conclusions: Dysmenorrhea had a high prevalence among the participants included in the study, and its presence was associated with a series of risk factors. Most women considered that dysmenorrhea affected their quality of life. The DysmenQoL questionnaire proved to be a reliable and valid method for evaluating the impact of dysmenorrhea on quality of life. Full article

In this study we focused on the need to fill a knowledge gap among Italian botanical studies namely that of ornamental species census. In particular, we addressed one of the regions in southern Italy with less knowledge in the field of such studies and with an obvious presence of non-native species. A widespread census of the Apulian territory was carried out between 2021 and 2024 in both urban and suburban areas including street trees, parks, and private and historic gardens. The inventory of ornamental trees, shrubs, and succulents of Apulia (southern Italy) was carried out in six provinces, i.e., Bari, Barletta-Andria-Trani, Brindisi, Foggia, Lecce, and Taranto. The checklist comprises 287 taxa (including 265 species, 6 varieties, 5 subspecies, and 11 forms) included in 179 genera belonging to 78 families. We evaluated the number of taxa per families and genera, the presence of each taxa in the provinces of Apulia, the number of taxa per occurrence status, growth forms, geographical origin, and the number of native and alien taxa and also the artificial hybrids. Remarks of the most significant taxa and evaluation of geographical distribution in Italy were also taken into consideration. A large number of surveyed taxa (51.74%) are comprised in the list reported in the recent study on allochthonous vascular flora in Italy with a marked prevalence of Neophyte Casual Alien and Neophyte Naturalized Alien species. Full article

In order to understand the bias and main affecting factors of codon usage in the plastid genome of Diplandrorchis sinica, which is a rare and endangered plant species in the Orchidaceae family, the complete plastid genome sequence of D. sinica was downloaded from the GenBank database and 20 protein-coding sequences that met the analysis requirements were finally selected. The GC content, length of the amino acid (Laa), relative synonymous codon usage (RSCU), and effective number of codon (ENC) of each gene and codon were calculated using the CodonW and EMBOSS online programs. Neutral plot analysis, ENC-plot analysis, PR2-plot analysis, and correspondence analysis were performed using Origin Pro 2024 software, and correlation analysis between various indicators was performed using SPSS 23.0 software. The results showed that the third base of the codon in the plastid genome of D. sinica was rich in A and T, with a GC₃ content of 27%, which was lower than that of GC₁ (45%) and GC₂ (39%). The ENC value ranged from 35 to 57, with an average of 47. The codon usage bias was relatively low, and there was a significant positive correlation between ENC and GC₃. There were a total of 32 codons with RSCU values greater than 1, of which 30 ended with either A or U. There were a total of nine optimal codons identified, namely, UCU, UCC, UCA, GCA, UUG, AUA, CGU, CGA, and GGU. This study indicated that the dominant factor affecting codon usage bias in the plastid genome of D. sinica was natural selection pressure, while the impact of base mutations was limited. The codon usage patterns were not closely related to gene types, and the distribution of photosynthetic system genes and ribosomal protein-coding gene loci was relatively scattered, indicating significant differences in the usage patterns of these gene codons. In addition, the codon usage patterns may not be related to whether the plant is a photosynthetic autotrophic or heterotrophic nutritional type. The results of this study could provide scientific references for the genomic evolution and phylogenetic research of plant species in the family Orchidaceae. Full article