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Keywords = evolution of symbiosis

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20 pages, 17002 KiB  
Article
Genome-Wide Identification and Evolutionary Analysis of the GATA Transcription Factor Family in Nitrogen-Fixing Legumes
by Meng Xia, Liwen Tang, Haoming Zhai, Yezhou Liu, Liangsheng Zhang and Dan Chen
Plants 2025, 14(16), 2456; https://doi.org/10.3390/plants14162456 (registering DOI) - 8 Aug 2025
Abstract
GATA transcription factors are crucial for plant development and environmental responses, yet their roles in plant evolution and root nodule symbiosis are still not well understood. This study identified GATA genes across the genomes of 77 representative plant species, revealing that this gene [...] Read more.
GATA transcription factors are crucial for plant development and environmental responses, yet their roles in plant evolution and root nodule symbiosis are still not well understood. This study identified GATA genes across the genomes of 77 representative plant species, revealing that this gene family originated in Charophyta and significantly expanded in both gymnosperms and angiosperms. Phylogenetic analyses, along with examinations of conserved motifs and cis-regulatory elements in Glycine max and Arabidopsis, clearly demonstrated structural and functional divergence within the GATA family. Chromosomal mapping and synteny analysis indicated that GATA gene expansion in soybean primarily resulted from whole-genome duplication events. These genes also exhibit high conservation and signs of purifying selection in Glycine max, Lotus japonicus, and Medicago truncatula. Furthermore, by integrating phylogenetic and transcriptomic data from eight nitrogen-fixing legume species, several GATA genes were identified as strongly co-expressed with NIN1, suggesting their potential co-regulatory roles in nodule development and symbiosis. Collectively, this study offers a comprehensive overview of the evolutionary dynamics of the GATA gene family and highlights their potential involvement in root nodule symbiosis in legumes, thus providing a theoretical foundation for future mechanistic studies. Full article
(This article belongs to the Special Issue Advances in Legume Crops Research—2nd Edition)
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18 pages, 253 KiB  
Article
Artificial Intelligence: A New Challenge for Human Understanding, Christian Education, and the Pastoral Activity of the Churches
by Wiesław Przygoda, Alina Rynio and Michał Kalisz
Religions 2025, 16(8), 948; https://doi.org/10.3390/rel16080948 - 22 Jul 2025
Viewed by 437
Abstract
Artificial intelligence (AI) is one of the most influential and rapidly developing phenomena of our time. New fields of study are being created at universities, and managers are constantly introducing new AI solutions for business management, marketing, and advertising new products. Unfortunately, AI [...] Read more.
Artificial intelligence (AI) is one of the most influential and rapidly developing phenomena of our time. New fields of study are being created at universities, and managers are constantly introducing new AI solutions for business management, marketing, and advertising new products. Unfortunately, AI is also used to promote dangerous political parties and ideologies. The research problem that is the focus of this work is expressed in the following question: How does the symbiotic relationship between artificial and natural intelligence manifest across three dimensions of human experience—philosophical understanding, educational practice, and pastoral care—and what hermeneutical, phenomenological, and critical realist insights can illuminate both the promises and perils of this emerging co-evolution? In order to address this issue, an interdisciplinary research team was established. This team comprised a philosopher, an educator, and a pastoral theologian. This study is grounded in a critical–hermeneutic meta-analysis of the existing literature, ecclesial documents, and empirical investigations on AI. The results of scientific research allow for a broader insight into the impact of AI on humans and on personal relationships in Christian communities. The authors are concerned not only with providing an in-depth understanding of the issue but also with taking into account the ecumenical perspective of religious, social, and cultural education of contemporary Christians. Our analysis reveals that cultivating a healthy symbiosis between artificial and natural intelligence requires specific competencies and ethical frameworks. We therefore conclude with practical recommendations for Christian formation that neither uncritically embrace nor fearfully reject AI, but rather foster wise discernment for navigating this unprecedented co-evolutionary moment in human history. Full article
39 pages, 1305 KiB  
Review
AI Trustworthiness in Manufacturing: Challenges, Toolkits, and the Path to Industry 5.0
by M. Nadeem Ahangar, Z. A. Farhat and Aparajithan Sivanathan
Sensors 2025, 25(14), 4357; https://doi.org/10.3390/s25144357 - 11 Jul 2025
Viewed by 950
Abstract
The integration of Artificial Intelligence (AI) into manufacturing is transforming the industry by advancing predictive maintenance, quality control, and supply chain optimisation, while also driving the shift from Industry 4.0 towards a more human-centric and sustainable vision. This emerging paradigm, known as Industry [...] Read more.
The integration of Artificial Intelligence (AI) into manufacturing is transforming the industry by advancing predictive maintenance, quality control, and supply chain optimisation, while also driving the shift from Industry 4.0 towards a more human-centric and sustainable vision. This emerging paradigm, known as Industry 5.0, emphasises resilience, ethical innovation, and the symbiosis between humans and intelligent systems, with AI playing a central enabling role. However, challenges such as the “black box” nature of AI models, data biases, ethical concerns, and the lack of robust frameworks for trustworthiness hinder its widespread adoption. This paper provides a comprehensive survey of AI trustworthiness in the manufacturing industry, examining the evolution of industrial paradigms, identifying key barriers to AI adoption, and examining principles such as transparency, fairness, robustness, and accountability. It offers a detailed summary of existing toolkits and methodologies for explainability, bias mitigation, and robustness, which are essential for fostering trust in AI systems. Additionally, this paper examines challenges throughout the AI pipeline, from data collection to model deployment, and concludes with recommendations and research questions aimed at addressing these issues. By offering actionable insights, this study aims to guide researchers, practitioners, and policymakers in developing ethical and reliable AI systems that align with the principles of Industry 5.0, ensuring both technological advancement and societal value. Full article
(This article belongs to the Section Industrial Sensors)
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25 pages, 2168 KiB  
Article
A Study on the Evolution Game of Multi-Subject Knowledge Sharing Behavior in Open Innovation Ecosystems
by Gupeng Zhang, Hua Zou, Shuo Yang and Qiang Hou
Systems 2025, 13(7), 511; https://doi.org/10.3390/systems13070511 - 25 Jun 2025
Viewed by 306
Abstract
With the shift of the global innovation model from traditional closed-loop to open ecosystems, knowledge sharing and collaborative cooperation among firms have become key to obtaining sustainable competitive advantages. However, existing studies mostly focus on the static structure, and there is an insufficient [...] Read more.
With the shift of the global innovation model from traditional closed-loop to open ecosystems, knowledge sharing and collaborative cooperation among firms have become key to obtaining sustainable competitive advantages. However, existing studies mostly focus on the static structure, and there is an insufficient exploration of the dynamic evolutionary mechanism and multi-party game strategies. In this paper, a two-dimensional analysis framework integrating the evolutionary game and the Lotka–Volterra model is constructed to explore the behavioral and strategic evolution of core enterprises, SMEs and the government in the innovation ecosystem. Through theoretical modeling and numerical simulation, the effects of different variables on system stability are revealed. It is found that a moderately balanced benefit allocation can stimulate two-way knowledge sharing, while an over- or under-allocation ratio will inhibit the synergy efficiency of the system; a moderate difference in the knowledge stock can promote knowledge complementarity, but an over-concentration will lead to the monopoly and closure of the system; and the government subsidy needs to accurately match the cost of the openness of the enterprises with the potential benefits to the society, so as to avoid the incentive from being unused. Accordingly, it is suggested to optimize the competition structure among enterprises through the dynamic benefit distribution mechanism, knowledge sharing platform construction and classification subsidy policy, promote the evolution of the innovation ecosystem to a balanced state of mutual benefit and symbiosis, and provide theoretical basis and practical inspiration for the governance of the open innovation ecosystem. Full article
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16 pages, 3631 KiB  
Article
The Impact of the Mechanism of Biocarriers on Bacterial–Microbial Symbiosis for Mariculture Wastewater Treatment: Performance and Microbial Community Evolution
by Lingjie Li, Xiankun Qu, Weijia Gong, Lin Guo, Binghan Xie, Weirun Li, Guoyu Zhang, Haili Tan, Yuhong Jia, Jiahao Liang and Mengqi Zheng
Water 2025, 17(8), 1127; https://doi.org/10.3390/w17081127 - 10 Apr 2025
Cited by 2 | Viewed by 637
Abstract
Mariculture wastewater is an intractable wastewater, owing to its high salinity inhibiting microbial metabolism. The biocarrier bacterial–microbial consortium (BBM) and bacterial–microbial consortium (BM) were developed to investigate the mechanism of pollutant degradation and microbial community evolution. The BBM exhibited excellent mariculture wastewater treatment, [...] Read more.
Mariculture wastewater is an intractable wastewater, owing to its high salinity inhibiting microbial metabolism. The biocarrier bacterial–microbial consortium (BBM) and bacterial–microbial consortium (BM) were developed to investigate the mechanism of pollutant degradation and microbial community evolution. The BBM exhibited excellent mariculture wastewater treatment, with the highest removal for TOC (91.78%), NH4+-N (79.33%) and PO43−-P (61.27%). Biocarriers accelerated anaerobic region formation, with the levels of denitrifying bacteria accumulation improving nitrogen degradation in the BBM. Moreover, the biocarrier enhanced the production of soluble microbial products (SMPs) (11.53 mg/L) and extracellular polymeric substances (EPSs) (370.88 mg/L), which accelerated the formation of bacterial and microalgal flocs in the BBM. The fluorescence excitation–emission matrix (EEM) results demonstrated that the addition of biocarriers successfully decreased the production of aromatic-like components in anoxic and aerobic supernatants. Additionally, the biocarrier shifted the bacterial community constitutions significantly. Biocarriers provided an anoxic microenvironment, which enhanced enrichments of Rhodobacteraceae (66%) and Ruegeria (70%), with a satisfying denitrification in the BBM. This study provided a novel biocarrier addition to the BBM system for actual mariculture wastewater treatment. Full article
(This article belongs to the Special Issue Algae-Based Technology for Wastewater Treatment)
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15 pages, 1180 KiB  
Review
Root Phenotyping: A Contribution to Understanding Drought Stress Resilience in Grain Legumes
by Patrícia Afonso, Isaura Castro, Pedro Couto, Fernanda Leal, Valdemar Carnide, Eduardo Rosa and Márcia Carvalho
Agronomy 2025, 15(4), 798; https://doi.org/10.3390/agronomy15040798 - 24 Mar 2025
Cited by 2 | Viewed by 1253
Abstract
Global climate change predictions point to an increase in the frequency of droughts and floods, which are a huge challenge to food production. During crop evolution, different mechanisms for drought resilience have emerged, and studies suggest that roots can be an important key [...] Read more.
Global climate change predictions point to an increase in the frequency of droughts and floods, which are a huge challenge to food production. During crop evolution, different mechanisms for drought resilience have emerged, and studies suggest that roots can be an important key in understanding these mechanisms. However, knowledge is still scarce, being fundamental to its exploitation. Plant-based protein, especially grain legume crops, will be crucial in meeting the demand for affordable and healthy food due to their high protein content. In addition, grain legumes have the unique ability for biological nitrogen fixation (BNF) through symbiosis with bacteria, which contributes to sustainable agriculture. The exploitation of root phenotyping techniques in grain legumes is an important step toward understanding their drought resilience mechanisms and selecting more resilient genotypes. Different methodologies are available for root phenotyping, including the paper pouch approach, rhizotrons and the semi-hydroponic system. Additionally, different imaging techniques have been employed to assess root traits. This review provides an overview of the root system architecture (RSA) of grain legumes, its role in drought stress resilience and the phenotyping approaches useful for the identification of accessions resilient to water stress. Consequently, this knowledge will be important in mitigating the effects of climate change and improving grain legume production. Full article
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23 pages, 55462 KiB  
Review
Lichens and Health—Trends and Perspectives for the Study of Biodiversity in the Antarctic Ecosystem
by Tatiana Prado, Wim Maurits Sylvain Degrave and Gabriela Frois Duarte
J. Fungi 2025, 11(3), 198; https://doi.org/10.3390/jof11030198 - 4 Mar 2025
Cited by 1 | Viewed by 1278
Abstract
Lichens are an important vegetative component of the Antarctic terrestrial ecosystem and present a wide diversity. Recent advances in omics technologies have allowed for the identification of lichen microbiomes and the complex symbiotic relationships that contribute to their survival mechanisms under extreme conditions. [...] Read more.
Lichens are an important vegetative component of the Antarctic terrestrial ecosystem and present a wide diversity. Recent advances in omics technologies have allowed for the identification of lichen microbiomes and the complex symbiotic relationships that contribute to their survival mechanisms under extreme conditions. The preservation of biodiversity and genetic resources is fundamental for the balance of ecosystems and for human and animal health. In order to assess the current knowledge on Antarctic lichens, we carried out a systematic review of the international applied research published between January 2019 and February 2024, using the PRISMA model (Preferred Reporting Items for Systematic Reviews and Meta-Analyses). Articles that included the descriptors “lichen” and “Antarctic” were gathered from the web, and a total of 110 and 614 publications were retrieved from PubMed and ScienceDirect, respectively. From those, 109 publications were selected and grouped according to their main research characteristics, namely, (i) biodiversity, ecology and conservation; (ii) biomonitoring and environmental health; (iii) biotechnology and metabolism; (iv) climate change; (v) evolution and taxonomy; (vi) reviews; and (vii) symbiosis. Several topics were related to the discovery of secondary metabolites with potential for treating neurodegenerative, cancer and metabolic diseases, besides compounds with antimicrobial activity. Survival mechanisms under extreme environmental conditions were also addressed in many studies, as well as research that explored the lichen-associated microbiome, its biodiversity, and its use in biomonitoring and climate change, and reviews. The main findings of these studies are discussed, as well as common themes and perspectives. Full article
(This article belongs to the Section Fungal Evolution, Biodiversity and Systematics)
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25 pages, 2048 KiB  
Article
Unlocking Corporate Sustainability: The Transformative Role of Digital–Green Fusion in Driving Sustainable Development Performance
by Yue Yang and Fan Luo
Systems 2025, 13(1), 13; https://doi.org/10.3390/systems13010013 - 30 Dec 2024
Cited by 1 | Viewed by 1222
Abstract
Amidst the rapid evolution of digital technologies and the strategic imperative of achieving dual-carbon objectives, this paper empirically investigates how digital–green fusion (DGF) enhances corporate sustainable development performance (SDP), fostering a “harmonious symbiosis” between economic growth and environmental protection. Utilizing data from China’s [...] Read more.
Amidst the rapid evolution of digital technologies and the strategic imperative of achieving dual-carbon objectives, this paper empirically investigates how digital–green fusion (DGF) enhances corporate sustainable development performance (SDP), fostering a “harmonious symbiosis” between economic growth and environmental protection. Utilizing data from China’s A-share listed companies over the period 2010–2022, the analysis reveals that DGF significantly boosts SDP, with results remaining robust through a series of endogeneity and robustness tests. Mechanism analysis further demonstrates that digital-green integration not only drives green technology innovation and enhances information transparency but also optimizes labor resource allocation efficiency, collectively contributing to improved corporate sustainability performance. Additionally, heterogeneity analysis indicates that the positive impact of DGF on SDP is particularly pronounced in large enterprises, state-owned enterprises, and firms operating in industries with low environmental uncertainty. This offers a strategic blueprint for harnessing digital–green fusion to achieve long-term synergies between environmental sustainability and economic growth. Full article
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35 pages, 17235 KiB  
Article
Constructing Local Religious Landscapes: Spatiotemporal Evolution of Tibetan Buddhist Temples in the Tibetan–Yi Corridor
by Tianyi Min and Tong Zhang
Religions 2024, 15(12), 1477; https://doi.org/10.3390/rel15121477 - 4 Dec 2024
Cited by 1 | Viewed by 2082
Abstract
Situated in the mountainous and gorge-ridden region at the junction of the Tibet Autonomous Region, Sichuan Province, and Yunnan Province, the Tibetan–Yi Corridor is home to the Kham Tibetan area, one of China’s three traditional Tibetan areas. Tibetan Buddhism and the establishment of [...] Read more.
Situated in the mountainous and gorge-ridden region at the junction of the Tibet Autonomous Region, Sichuan Province, and Yunnan Province, the Tibetan–Yi Corridor is home to the Kham Tibetan area, one of China’s three traditional Tibetan areas. Tibetan Buddhism and the establishment of its temples in this region have evolved and propagated from nothing to a diverse landscape since the 8th century. Existing studies, however, have paid little attention to the intricate interplay between the formation of this sacred religious landscape and the specific geographic and sociocultural contexts in which it is situated. By taking temple architecture as a research vehicle, this study begins by extracting spatial data from historical GIS network data resources and 276 local gazetteers of 45 counties in the Tibetan–Yi Corridor. Secondly, it digitalizes and quantifies the geographic information, construction dates, sectarian affiliations, and sizes of 1479 Tibetan Buddhist temples in the region, establishing a database covering four historical periods. Finally, it employs GIS technology to visualize the spatial distribution of these temples, revealing their spatial and temporal patterns and evolution. From a religious geographical perspective, this study reconstructs the historical trajectories and diffusion patterns of the Nyingma, Kagyu, Sakya, Gelug, Jonang, and Bon sects in the Tibetan–Yi Corridor, revealing the complex interplay, succession, and ebb and flow of these sects over time. The research results show that the historical spread and development of Tibetan Buddhism in the Tibetan–Yi Corridor were influenced by a complex interplay of geographical, social, political, and economic factors, including the unique topography of the Qinghai–Tibet Plateau and Hengduan Mountains, the complex interplay of agriculture and pastoralism, the historical influence of dynastic changes and central government policies on border regions, and ancient pilgrimage and trade routes. At the same time, as a multi-ethnic region inhabited by over 20 minorities, including Tibetans, Yi, Qiang, Naxi, and Nu, the Tibetan–Yi Corridor has a cultural identity dominated by religion, which has become an important factor in maintaining multi-ethnic symbiosis throughout its history, highlighting the unique historical status and role of the Tibetan–Yi Corridor in the entire Tibetan Buddhist cultural circle. Full article
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18 pages, 3782 KiB  
Article
Active Displacement of a Unique Diatom–Ciliate Symbiotic Association
by Yonara Garcia, Felipe M. Neves, Flavio R. Rusch, Leandro T. De La Cruz, Marina E. Wosniack, J. Rudi Strickler, Marcos G. E. da Luz and Rubens M. Lopes
Fluids 2024, 9(12), 283; https://doi.org/10.3390/fluids9120283 - 29 Nov 2024
Cited by 1 | Viewed by 1209
Abstract
Adaptive movement in response to individual interactions represents a fundamental evolutionary solution found by both unicellular organisms and metazoans to avoid predators, search for resources or conspecifics for mating, and engage in other collaborative endeavors. Displacement processes are known to affect interspecific relationships, [...] Read more.
Adaptive movement in response to individual interactions represents a fundamental evolutionary solution found by both unicellular organisms and metazoans to avoid predators, search for resources or conspecifics for mating, and engage in other collaborative endeavors. Displacement processes are known to affect interspecific relationships, especially when linked to foraging strategies. Various displacement phenomena occur in marine plankton, ranging from the large-scale diel vertical migration of zooplankton to microscale interactions around microalgal cells. Among these symbiotic interactions, collaboration between the centric diatom Chaetoceros coarctatus and the peritrich ciliate Vorticella oceanica is widely known and has been recorded in several studies. Here, using 2D and 3D tracking records, we describe the movement patterns of the non-motile, chain-forming diatoms (C. coarctatus) carried by epibiotic ciliates (V. oceanica). The reported data on the Chaetoceros–Vorticella association illustrated the consortium’s ability to generate distinct motility patterns. We established that the currents generated by the attached ciliates, along with the variability in the contraction and relaxation of ciliate stalks in response to food concentration, resulted in three types of trajectories for the consortium. The characteristics of these distinct paths were determined using robust statistical methods, indicating that the different displacement behaviors allowed the consortium to adequately explore distributed resources and remain within the food-rich layers provided in the experimental containers. A simple mechanical–stochastic model was successfully applied to simulate the observed displacement patterns, further supporting the proposed mechanisms of collective response to the environment. Full article
(This article belongs to the Special Issue Biological Fluid Dynamics, 2nd Edition)
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18 pages, 6791 KiB  
Review
Origin and Evolution of the Azolla Superorganism
by Jonathan Bujak and Alexandra Bujak
Plants 2024, 13(15), 2106; https://doi.org/10.3390/plants13152106 - 29 Jul 2024
Cited by 1 | Viewed by 3886
Abstract
Azolla is the only plant with a co-evolving nitrogen-fixing (diazotrophic) cyanobacterial symbiont (cyanobiont), Nostoc azollae, resulting from whole-genome duplication (WGD) 80 million years ago in Azolla’s ancestor. Additional genes from the WGD resulted in genetic, biochemical, and morphological changes in the [...] Read more.
Azolla is the only plant with a co-evolving nitrogen-fixing (diazotrophic) cyanobacterial symbiont (cyanobiont), Nostoc azollae, resulting from whole-genome duplication (WGD) 80 million years ago in Azolla’s ancestor. Additional genes from the WGD resulted in genetic, biochemical, and morphological changes in the plant that enabled the transmission of the cyanobiont to successive generations via its megaspores. The resulting permanent symbiosis and co-evolution led to the loss, downregulation, or conversion of non-essential genes to pseudogenes in the cyanobiont, changing it from a free-living organism to an obligate symbiont. The upregulation of other genes in the cyanobiont increased its atmospheric dinitrogen fixation and the provision of nitrogen-based products to the plant. As a result, Azolla can double its biomass in less than two days free-floating on fresh water and sequester large amounts of atmospheric CO2, giving it the potential to mitigate anthropogenic climate change through carbon capture and storage. Azolla’s biomass can also provide local, low-cost food, biofertiliser, feed, and biofuel that are urgently needed as our population increases by a billion every twelve years. This paper integrates data from biology, genetics, geology, and palaeontology to identify the location, timing and mechanism for the acquisition of a co-evolving diazotrophic cyanobiont by Azolla’s ancestor in the Late Cretaceous (Campanian) of North America. Full article
(This article belongs to the Special Issue Plant–Cyanobacteria Symbiosis: From Morphology to Practical Uses)
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21 pages, 12286 KiB  
Article
Research on the Value of Water-Related Cultural Heritage Architecture from Historical Environmental Records: Evidence from the Li River Basin in China
by Qifan Dai, Yueqing Wei, Yequan Hu, Tao Chen, Yixun Yan, Yansheng Gu and Qi Wang
Land 2024, 13(6), 838; https://doi.org/10.3390/land13060838 - 12 Jun 2024
Cited by 3 | Viewed by 1773
Abstract
Water-related cultural heritage architecture (WRCHA) represents a globally significant and potentially hybrid heritage found across river basins worldwide. Its spatial and temporal evolution characteristics offer insight into the development trends of river basin environments, yet their value within water-related cultural and environmental systems [...] Read more.
Water-related cultural heritage architecture (WRCHA) represents a globally significant and potentially hybrid heritage found across river basins worldwide. Its spatial and temporal evolution characteristics offer insight into the development trends of river basin environments, yet their value within water-related cultural and environmental systems remain incompletely assessed. This study undertakes qualitative and quantitative analyses of the historical spatial and temporal distributions, influencing factors, and environmental changes affecting the water-related culture, climate, population, and urban areas of 295 WRCHA sites in the Li River Basin of China, employing drought–flood indices, GIS analyses, random forest algorithms, and other methodologies. The results reveal that (1) the Lishui Basin contains a significant distribution pattern of agglomeration for WRCHA within the river basin, concentrated along the river, at low altitudes, with minimal terrain variation, and radiating around ancient governance centers, with varying increases observed across different periods and aggregation zones and with significant spatial and temporal heterogeneities; (2) the distribution pattern is influenced by joint natural and human factors, closely tied to variables such as the river network density, DEM, population changes, and distance to ancient government sites; (3) the combination of the architecture’s location and elevation, along with drought–flood curves, reflects the position of the ancient riverbed of the Lishui River and its historical maximum water level. The quantity of new constructions, in conjunction with the distance from ancient government centers and the trends in population change, thus indicates the urban scale and the frequency and severity of disasters. This study provides a research paradigm and historical reference model for investigating environmental changes in watershed systems, aiding in clarifying the historical human–water symbiosis pattern in the middle reaches of the Yangtze River. Such insights will furnish a scientific basis for future regional ecological planning and watershed environmental management. Full article
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14 pages, 19845 KiB  
Article
Ficus Genome Database: A Comprehensive Genomics and Transcriptomics Research Platform
by Peng Sun, Lei Yang, Hui Yu, Lianfu Chen and Ying Bao
Horticulturae 2024, 10(6), 613; https://doi.org/10.3390/horticulturae10060613 - 9 Jun 2024
Viewed by 1921
Abstract
Ficus is a significant genus within the Moraceae family, primarily native to tropical and subtropical regions. It plays a crucial role in the study of co-evolution and genetics in the fig–fig wasp symbiosis. Advancements in sequencing technology have facilitated whole-genome sequencing of several [...] Read more.
Ficus is a significant genus within the Moraceae family, primarily native to tropical and subtropical regions. It plays a crucial role in the study of co-evolution and genetics in the fig–fig wasp symbiosis. Advancements in sequencing technology have facilitated whole-genome sequencing of several Ficus species, accumulating vast amounts of genomic and transcriptomic data available in public databases. To streamline data integration, display, and analysis, we developed the Ficus Genome Database (FGD), a consolidated platform for the genomic data of five Ficus species, and self-assembled transcriptome data for 24 fig ostiolar bracts. The FGD is currently home to a diverse array of data, encompassing genome and gene sequences, annotations of genes, transcriptome analyses, biochemical pathways, non-coding RNA, and findings from comparative genomic studies, such as collinear blocks across different Ficus genome assemblies. To enhance translational and practical research concerning Ficus, FGD provides an extensive suite of accessible query interfaces, analytical instruments, and visualization options. These include the NCBI BLAST sequence search tool and the JBrowse/GBrowse genome browser. FGD also offers several distinct tools, including a genome Synteny Viewer, expression heatmap display, gene family identification, Gene Ontology terms enrichment, and pathway enrichment analysis. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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28 pages, 6417 KiB  
Article
Evolution Model, Mechanism, and Performance of Urban Park Green Areas in the Grand Canal of China
by Zihan Cai, Sidong Zhao, Mengshi Huang and Congguo Zhang
Land 2024, 13(1), 42; https://doi.org/10.3390/land13010042 - 30 Dec 2023
Cited by 4 | Viewed by 2031
Abstract
Urban park green areas are part of territorial space planning, shouldering the mission of providing residents with high-quality ecological products and public space. Using a combination of several measurement models such as the BCG (Boston Consulting Group) matrix, ESDA (Exploratory Spatial Data Analysis), [...] Read more.
Urban park green areas are part of territorial space planning, shouldering the mission of providing residents with high-quality ecological products and public space. Using a combination of several measurement models such as the BCG (Boston Consulting Group) matrix, ESDA (Exploratory Spatial Data Analysis), MLR (Machine Learning Regression), GWR (Geographically Weighted Regression), and GeoDetector, this paper presents an empirical study on the changes in Urban Park Green Areas (UPGAs) in the Grand Canal of China. By quantitatively measuring the spatio–temporal evolution patterns of UPGAs, this study reveals the driving mechanisms behind them and proposes policy recommendations for planning and management based on performance evaluation. The spatio–temporal evolution of UPGAs and their performance in China’s Grand Canal are characterized by significant spatial heterogeneity and correlation, with diversified development patterns such as HH (High-scale–High-growth), HL (High-scale–Low-growth), LH (Low-scale–High-growth), and LL (Low-scale–Low-growth) emerging. The evolution performance is dominated by positive oversupply and positive equilibrium, where undersupply coexists with oversupply. Therefore, this paper recommends the implementation of a zoning strategy in the future spatial planning of ecological green areas, urban parks, and green infrastructure. It is also recommended to design differentiated construction strategies and management policies for each zoning area, while promoting inter-city mutual cooperation in the joint preparation and implementation of integrated symbiosis planning. Furthermore, the spatio–temporal evolution of the UPGAs in the Grand Canal of China is influenced by many factors with very complex dynamic mechanisms, and there are significant differences in the nature, intensity, spatial effects, and interaction effects between different factors. Therefore, in the future management of ecological green areas, urban parks, and green infrastructure, it is necessary to interconnect policies to enhance their synergies in population, aging, industry and economy, and ecological civilization to maximize the policy performance. Full article
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23 pages, 2906 KiB  
Article
Synergy Assessment of River Health Values from a Symbiotic Perspective: A Case Study of the Yellow River Basin in China
by Puran Xiong, Jiwei Zhu, Ran He and Hucheng Li
Water 2024, 16(1), 91; https://doi.org/10.3390/w16010091 - 26 Dec 2023
Cited by 5 | Viewed by 1773
Abstract
Rivers are important carriers of water transmission, water supply, and water nourishment, and the virtuous cycle of their ecosystems is directly related to the degree of completion of the construction of ecological civilization and the high-quality development of the national economy. From the [...] Read more.
Rivers are important carriers of water transmission, water supply, and water nourishment, and the virtuous cycle of their ecosystems is directly related to the degree of completion of the construction of ecological civilization and the high-quality development of the national economy. From the perspective of symbiosis theory, this paper constructs a river health value assessment index system and analyzes the symbiotic synergistic effect of nine provinces in the Yellow River Basin in China from 2000 to 2020 by using a logistic symbiosis evolution model. Health values at the Yellow River Basin scale and the provincial administrative area scale were also analyzed, and it was found that (1) the Yellow River Basin experienced a period of sub-par river health in the past, but with the implementation of ecological protection and high-quality development strategy in recent years, the health of the river showed an trend of improvement during the period of 2017–2020; (2) at the provincial administrative scale, the Yellow River Basin has significant differences, which are manifested in the obvious differences between provinces in terms of the functional value of river health provision and the economic functional value. In order to reduce the regional differences, it is recommended that the provinces work together and give full play to their own characteristics and strengths in the management of the watershed, so as to make up for the weaknesses of regional development and realize the synergistic development of the watershed; and (3) in terms of symbiosis level, rivers in the Yellow River Basin generally show parasitic relationships, and most of them exhibit natural ecological diversity and competitiveness with socio-economics. Therefore, a more comprehensive consideration of the balanced development of each function is needed in river health management in the future to achieve integrated watershed health. These results suggest that the development of river ecological health in the Yellow River Basin requires the joint efforts of the whole of society as well as regional synergy and integrated management at the policy level to achieve more sustainable and balanced watershed development. Full article
(This article belongs to the Section Water and One Health)
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