Search Results (467)

Deforestation driven by plantations, such as Pinus patula Schiede ex Schltdl. et Cham., is a major cause of biodiversity and functional loss in tropical ecosystems. We assessed the diversity and composition of lichens and bryophytes in four size categories of pine cones, small (3–5 cm), medium (5.1–8 cm), large (8.1–10 cm), and very large (10.1–13 cm), with a total of 150 pine cones examined, where the occurrence and cover of lichen and bryophyte species were recorded. Identification keys based on morpho-anatomical features were used to identify lichens and bryophytes. In addition, for lichens, secondary metabolites were tested using spot reactions with potassium hydroxide, commercial bleach, and Lugol’s solution, and by examining the specimens under ultraviolet light. To evaluate the effect of pine cone size on species richness, the Kruskal–Wallis test was conducted, and species composition among cones sizes was compared using multivariate analysis. A total of 48 taxa were recorded on cones, including 41 lichens and 7 bryophytes. A total of 39 species were found on very large cones, 37 species on large cones, 35 species on medium cones, and 24 species on small cones. This is comparable to the diversity found in epiphytic communities of pine plantations. Species composition was influenced by pine cone size, differing from small in comparison with very large ones. The PERMANOVA analyses revealed that lichen and bryophyte composition varied significantly among the pine cone categories, explaining 21% of the variance. Very large cones with specific characteristics harbored different communities than those on small pine cones. The presence of lichen and bryophyte species on the pine cones from managed Ecuadorian P. patula plantations may serve as refugia for the conservation of biodiversity. Pine cones and their scales (which range from 102 to 210 per cone) may facilitate colonization of new areas by dispersal agents such as birds and rodents. The scales often harbor lichen and bryophyte propagules as well as intact thalli, which can be effectively dispersed, when the cones are moved. The prolonged presence of pine cones in the environment further enhances their role as possible dispersal substrates over extended periods. To our knowledge, this is the first study worldwide to examine pine cones as substrates for lichens and bryophytes, providing novel insights into their potential role as microhabitats within P. patula plantations and forest landscapes across both temperate and tropical zones. Full article

This study addresses the understanding of fungal diversity and their bioremediation roles in an integrated aquaculture wastewater bioremediation system, an area less explored compared to bacteria, viruses, and protozoa. Despite the rapid advancement and affordability of molecular tools, insights into fungal communities remain vague, and interpreting environmental studies in an ecologically meaningful manner continues to pose challenges. To bridge this knowledge gap, we developed an integrated aquaculture wastewater bioremediation system, incorporating photosynthetic bacteria, and utilizing internal transcribed spacer (ITS) sequencing to analyze fungal community composition. Our findings indicate that the fungal community in aquaculture wastewater is predominantly composed of the phyla Ascomycota and Chytridiomycota, with dominant genera including Aspergillus, Hortea, and Ciliphora. FUNGuild, a user-friendly trait and character database operating at the genus level, facilitated the ecological interpretation of fungal functional groups. The analysis revealed significant negative correlations between nutrient levels (COD_mn, NH₄⁺-N, NO₃⁻-N, NO₂⁻-N, and PO₄⁻³-P) and specific fungal functional groups, including epiphytes, animal pathogens, dung saprotrophs, plant pathogens, and ectomycorrhizal fungi. The removal rate for the COD_mn, NH₄⁺-N, NO₃⁻-N, NO₂⁻-N, and PO₄⁻³-P were 71.42, 91.37, 88.80, 87.20, and 91.72% respectively. This study highlights the potential role of fungal communities in bioremediation processes and provides a framework for further ecological interpretation in aquaculture wastewater treatment systems. Full article

The common oak (Quercus robur L.), though ecologically important and long-lived, has declined in Northern Europe due to historical land use and conifer-dominated forestry. In Latvia, where its distribution is limited, oaks support a rich biodiversity through features like tree-related microhabitats (TreMs) and diverse epiphytic communities. This study compared TreM and epiphyte diversity between planted mature oaks and relict champion oak trees across 16 forest stands. Epiphyte species were recorded using fixed-area frames on tree trunks, and TreMs were categorized following a hierarchical typology. Champion trees hosted significantly more TreMs and a greater variety, including 10 unique TreMs. While overall epiphyte diversity indices did not differ significantly, champion trees supported more specialist and woodland key habitat indicator species. The findings underscore the ecological value of legacy trees, which provide complex habitats essential for specialist taxa and indicators of forest continuity. Conserving such trees is vital for maintaining forest biodiversity and supporting ecosystem resilience in managed landscapes. Full article

Phyllosphere microbial communities influence the growth and productivity of plants, particularly in epiphytic plants, which are disconnected from nutrients available in the soil. We characterized the phyllosphere of 30 individuals of the epiphytic cycad, Zamia pseudoparasitica, collected from three forest sites during the rainy and dry seasons in the Republic of Panama. We used DNA metabarcoding to describe the total bacteria community with the 16S rRNA gene and the diazotrophic community with nifH gene. Common taxa included members of the Rhizobiales, Frankiales, Pseudonocardiales, Acetobacteriales, and the diazotrophic community was dominated by Cyanobacateria. We observed similar patterns of alpha diversity across sites and seasons, and no community differences were seen within sites between the rainy and dry seasons for either the 16S rRNA or nifH genes. However, pairwise comparisons showed some statistically significant differences in community composition between sites and seasons, but these explained only a small portion of the variation. Beta diversity partitioning indicated that communities were more phylogenetically closely related than expected by chance, indicative of strong environmental or host filtering shaping these phyllosphere communities. These results highlight the influence of host-driven selection and habitat stability in shaping phyllosphere microbiota, offering new insights into microbial assembly in tropical canopy ecosystems. Full article

The mid-Cretaceous Kachin amber deposit from northern Myanmar is currently a promising locality for reconstructing Cretaceous bryophyte floras. However, the vast majority of bryophyte fossils reported from Kachin amber are epiphytic leafy liverworts of Porellales and pleurocarpous mosses of Hypnodendrales, while acrocarpous mosses are rarely discovered. In addition, terrestrial-to-lithophytic bryophytes have never been reported from Kachin amber. In this study, we describe three new species of acrocarpous mosses, Calymperites proboscideus sp. nov., Calymperites chenianus sp. nov., and Ditrichites aristatus sp. nov. (Dicranales s.l.), based on 34 whole plants and 11 fragments embedded in 13 pieces of Kachin amber. Calymperites chenianus is an epiphytic species based on the connection to a bark fragment, while the other two species are the first terrestrial-to-lithophytic bryophytes from Kachin amber, based on the attachment of rhizoids to soil or rock. Calymperites chenianus and Calymperites proboscideus probably represent stem group members of Calymperaceae. Ditrichites aristatus is likely a member of Ditrichaceae or Dicranaceae. These new findings provide compelling evidence for palaeoecological habitat reconstruction of acrocarpous mosses and significantly expand our understanding of the species diversity of bryophyte communities in the Cretaceous amber forest of Myanmar. Full article

The plant microbiome plays a crucial role in the health of the tea plant, while Bacillus thuringiensis (Bt) is widely utilized as a biological pesticide in tea gardens, promoting sustainable agricultural practices. However, the effects of Bt spraying on tea quality and the structure and function of the phyllosphere microbiome remain unclear. This study evaluated the effects of Bt spraying on tea quality, microbiome composition, diversity, and potential functions using tea leaf quality measurements and high-throughput sequencing of the 16S/ITS rDNA genes. Results showed that spraying Bt1 significantly increased the contents of free amino acids (by 15.27%), flavonoids (by 18.00%), soluble sugars (by 62.55%), and key compounds such as epicatechin gallate (by 10.50%), gallocatechin gallate (by 122.52%), and epigallocatechin gallate (by 61.29%), leading to improved leaf quality. Co-occurrence network analysis indicated that the community structure of both epiphytic and endophytic microbes became more complex after Bt treatment. The abundance of beneficial bacteria, such as Novosphingobium, Methylobacterium, and Sphingomonas, increased significantly, while pathogenic fungi like Aspergillus and Phyllosticta decreased. Functional prediction indicated enhanced amino acid metabolism, secondary metabolism, and carbohydrate metabolism, particularly the biosynthesis of flavonoids, which supports disease resistance and boosts secondary metabolite levels. Furthermore, Bt application reduced pathogenic fungi, enhancing the tea plant’s resistance to diseases. Overall, foliar spraying of Bt can positively alter the phyllosphere microbiome by enriching beneficial bacteria and improving metabolic functions, ultimately enhancing tea plant resistance and quality, and providing a scientific basis for sustainable pest management in tea cultivation. Full article

Salinity and heavy metal stress significantly reduce agricultural productivity in arable lands, particularly affecting crops like rice (Oryza sativa L.). This study aimed to evaluate the efficacy of heavy metal-tolerant plant growth-promoting rhizobacteria (HMT-PGPR) in mitigating the harmful effects of salt (NaCl), chromium (Cr), and combined NaCl + Cr stress on rice plants. Two pre-isolated and well-characterized heavy metal-tolerant epiphytic (Ochrobactrum pseudogrignonense strain P14) and endophytic (Arthrobacter woluwensis strain M1R2) PGPR were tested. The LSD test (p ≤ 0.05) was used to assess the statistical significance between treatment means. Stresses caused by NaCl, Cr, and their combination were found to impair plant growth and biomass accumulation through mechanisms, including osmotic stress, oxidative damage, ionic imbalance, reduced photosynthetic pigment, lowered relative water content, and compromised antioxidant defense systems. Conversely, inoculation with HMT-PGPR alleviated these adverse effects by reducing oxidative stress indicators, including malondialdehyde (MDA), hydrogen peroxide (H₂O₂) content and electrolyte leakage (EL) and enhancing plant growth, osmolyte synthesis, and enzymatic antioxidant activity under single- and dual-stress conditions. The application of HMT-PGPR notably restricted Na⁺ and Cr⁶⁺ uptake, with an endophytic A. woluwensis M1R2 demonstrating superior performance in reducing Cr⁶⁺ translocation (38%) and bioaccumulation (42%) in rice under dual stress. The findings suggest that A. woluwensis effectively mitigates combined salinity and chromium stress by maintaining ion homeostasis and improving the plant’s antioxidant defenses. Full article

As an endemic epiphytic orchid of Hainan Island, Dendrobium sinense exhibits remarkable ecological and economic value, serving important ornamental and medicinal purposes. The combination of its epiphytic growth habit and the distinct dry season in Hainan (November–May) under the subtropical monsoon climate makes D. sinense particularly vulnerable to recurrent drought stress. Therefore, elucidating its drought tolerance mechanisms offers critical insights for both conservation strategies and stress resistance studies in D. sinense. Using polyethylene glycol (PEG)-induced drought stress, chlorophyll content decreased significantly with increasing PEG concentration, while MDA and proline content, SOD, POD CAT, and APX activity showed a significant increase. The analysis of physiological indicators indicated that plants have been subjected to drought stress. We then conducted the joint analysis of the metabolomics and transcriptomics data. Cluster analysis of differentially expressed genes and metabolites showed that drought stress markedly upregulates phenylpropanoid biosynthesis, with ferulic acid (FA) identified as a pivotal metabolite. Exogenous FA application alleviated drought-induced chlorophyll degradation in D. sinense seedlings. Heterologous expression of DsCOMT (a key FA biosynthetic gene) in Arabidopsis thaliana significantly enhanced drought survival. These results demonstrate the crucial role of FA in drought resistance and provide key insights into drought-related metabolic mechanisms. Full article

Seaweeds represent a vital yet often understudied component of the diet and cultural heritage of many coastal communities globally. This study investigated seaweed consumption practices in coastal communities of Tawi-Tawi, Philippines, through one-to-one interviews (n = 280) and focus group discussions (n = 7). The study revealed that nearly all (99%) of the population consumes seaweeds, with women comprising the majority of consumers who have done so since childhood (68% female vs. 32% male). These consumers were predominantly married (79%), within the 21–40 age group (53%), with families of 5–7 members (43%), practicing Islam (97%), and belonging to the Sama tribe (71%). A significant portion (48%) had resided in the area for 21–30 years, attained elementary to high school education (66%), and had a monthly income ranging from 1000 to 10,000 Philippine pesos (72%). Seaweed consumption was a family-wide practice (88%), including children, who typically started around 4–8 years old (61%), driven by perceived nutritional benefits (43%), preferred flavor (80%), affordability (19%), ease of preparation (33%), and cultural integration (23%). The primary edible seaweeds identified were Kappaphycus alvarezii (63%), K. striatus (58%), Kappaphycus spp. (47%), Eucheuma denticulatum (57%), Caulerpa lentillifera (64%), Caulerpa spp. (51%), C. cf. macrodisca ecad corynephora (45%), C. racemosa (30%), and Solieria robusta (49%), with less frequent consumption of K. malesianus (8%), Chaetomorpha crassa (3%), Gracilaria spp. (0.72%), and Hydroclathrus clathratus (0.36%). Specific plant parts were preferred for certain species, and preparation predominantly involved raw (75%) or cooked (77%) salads with spices, primarily prepared by mothers (72%). Consumers generally avoided seaweeds showing signs of ice-ice disease (95%), pale coloration (91%), or epiphyte infestation (84%). Consumption frequency was typically 1–3 times per week (45%), with knowledge largely passed down through generations (95%). Seaweed salads were primarily consumed as a viand (92%) at home (97%), with locals perceiving seaweed consumption as contributing to a healthy diet (40%) and overall well-being [e.g., aiding hunger (76%), improving digestion (20%), preventing obesity (14%), and aiding brain development (3%)]. The study’s findings emphasize the significant yet often overlooked role of seaweeds in the food systems and cultural heritage of Tawi-Tawi’s coastal communities. Future efforts should prioritize the sustainable management of wild resources, explore the cultivation of diverse edible species, and enhance nutritional awareness. Further research into traditional seaweed knowledge holds broader value. Full article

Almond anthracnose, primarily caused by Colletotrichum godetiae, severely affects intensively irrigated almond orchards. This polyphagous pathogen is dispersed among plants by rain splashes. Consequently, weeds may contribute to the survival and dispersal of the inoculum during the almond tree’s dormant period. This study investigated how C. godetiae interacts with plants from various species in the spontaneous flora of almond orchards and how these plant species may influence the maintenance and spread of inoculum and the disease. After inoculating a collection of plants with C. godetiae conidia, it was observed that the fungus can cause symptoms and signs on Lathyrus tingitanus and on Trifolium pratense and act as an epiphyte with the ability to maintain and multiply conidia on Conyza canadensis, Medicago orbicularis, Polygonum aviculare, Scorpiurus sulcatus, Taraxacum officinale, and Trifolium vesiculosum, thus contributing to the survival and multiplication of the inoculum. Conidia germinated and produced appressoria on Andryala integrifolia, Cichorium intybus, Medicago polymorpha, Medicago sativa, Torilis arvensis, Picris echioides, and Rumex pulcher, but no further development was detected, suggesting that these plants may limit the spread of the pathogen. A better understanding of the susceptibility of almond orchard flora will support optimized vegetation management to reduce inoculum reservoirs. Full article

Urban forests are remnants of forest habitats within urban areas. Their structural alterations create stressful microclimatic conditions that can influence the morphology of sensitive plants, such as ferns. This study analyzed variations in the morphological traits of ferns in four urban forest sites in central Veracruz, Mexico, considering the microclimatic differences arising from vegetation structure. Temperature, humidity, canopy openness, and radiation were measured, along with eight foliar traits, while assessing the impact of site and habit (terrestrial or epiphytic) on the response. Sites with greater alterations in vegetation structure exhibited increased canopy openness, solar radiation, temperature, and a higher number of days with lower relative humidity. In these sites, leaves showed an increase in dry matter content and vein density, indicating a greater investment in resource storage and structural resistance. In the less-disturbed sites, terrestrial ferns demonstrated larger leaf area and specific leaf area, suggesting greater growth potential. Conversely, epiphytes generally had smaller leaves, which could represent an adaptive advantage for these species. The results also suggest a process of biotic homogenization within this plant group, reflecting a similar morphological response, except for indicator species restricted to less disturbed sites. Thus, this study reveals that microclimatic variations induced by urbanization significantly affect plant morphology and, ultimately, species diversity. Full article

The traditional fermentation of table olives is a complex and dynamic, process, carried out by a consortium of microorganisms that interact with each other and contribute to the uniqueness and attractiveness of the final product. Fermentation is conducted by yeasts and lactic acid bacteria (LAB) that coexist in olive fruits. The succession of one microbial population to the detriment of others depends on internal and external factors that affect the process, e.g., the maturation degree of fruits, cultivar, endophytic, or epiphytic state of microorganisms, pH, water activity, temperature, and salt concentration. Thus, studying microbiota evolution and their identification in natural table olive fermentations is paramount. This review aims to provide an overview of the knowledge on the natural fermentation of table olives, namely regarding microbial dynamics, as to report the main species involved in the fermentation process, highlight the influence of the olive oil ecosystem on the origin of the microbiota and consequently on the obtaining of the final product. The results report a total of 97 yeast species and 45 LAB species described in olives and brine over the last few decades. Full article

Phosphorus (P) is a pivotal element in plant energy metabolism and growth, and P limitation is widespread among plants in nature. However, our understanding of how epiphytes allocate P and adapt to P-deficient environments remains limited. We selected an obligate epiphyte Pyrrosia sheareri from a subtropical forest as our research subject. We compared its carbon (C)–nitrogen (N)–P ecological stoichiometry, P fractions, and morphological and physiological traits under the two habitats (trunk-epiphytic and rock-epiphytic). We also constructed a plant trait network method (PTN) that includes 62 traits to explore the co-variation characteristics of plant traits across the whole plant and identify the hub traits. We found that the following: (1) Habitat type significantly affects plant P concentration, with trunk-epiphytic plants having higher P concentration than rock-epiphytic plants. Pyrrosia sheareri may be more strongly limited by P according to the results of C-N-P ecological stoichiometry. (2) Epiphytic habitats significantly affect plant P fractions but do not influence the relative allocation of P fractions. (3) Compared with rock-epiphytic plants, trunk-epiphytic plants adopt a root resource-acquisition strategy rather than relying on leaves. (4) P-related indicators link ecological stoichiometry with morphological and physiological traits and are hub traits in PTN. Overall, P. plays a key functional role in the environmental acclimatization of Pyrrosia sheareri, highlighting the morphological and physiological adaptability of epiphytes to various habitats in terms of P availability, allocation, and storage. Full article

Seagrass ecosystems support complex biological interactions that shape marine community structure and ecosystem functioning. Thanks to their structural complexity, they support heterogeneous communities and interact with associated benthic invertebrates and fish populations, establishing complex relationships that influence the performance and fitness of the involved organisms. This study, through a systematic review, investigated the existing potential biotic interactions between seagrasses and epibionts–epiphytes on a global scale. We created a complex search string and ran it in the online databases Scopus and Web of Science, yielding a total of 62 final outcomes spanning from 1984 to 2024. Our results revealed both positive and negative effects of different biotic interactions among these habitat formers and their associated symbionts. The review showed that the most studied interactions referred to Posidonia oceanica (Delile, 1813) L. and Zostera marina (Linnaeus, 1753), which provide refuge and habitat to different epiphytes and epibionts. The reviewed studies highlighted the importance of epiphytes, their potential role in seagrass growth, nutrient dynamics, and their implications for light absorption, while epibionts enhance canopy structure and can protect seagrasses from predation, but potential drawbacks remain poorly understood. Understanding and preserving these intricate biotic interactions is critical to ensuring the long-term functionality and resilience of seagrass ecosystems in a continuously changing environment. Full article