Search Results (1,120)

The Gastrodia elata Blume (GE) life cycle is unique, since its successful germination and growth rely on symbiosis with specific fungi (e.g., Armillaria mellea). However, the community succession, tissue specificity and functional potential of endophytic and rhizosphere bacterial communities during the seed formation stage of GE remain unclear. Here, we used high-throughput 16S rRNA gene sequencing to systematically explore the composition, diversity, and dynamic succession of bacterial communities across different stages of seed formation and among various tissues. Our results revealed that the endophytic community remained relatively stable across most developmental stages and tissue types (ANOSIM R = 0.4568, p = 0.001), with significant compositional shifts only occurring at the fruiting stage in specific tissues (stems and seeds). In contrast, the rhizosphere soil bacterial community showed stronger developmental succession (ANOSIM R = 0.7037, p = 0.001), with progressive divergence and the strongest segregation observed between the initial planting and fruiting stages. Alpha diversity peaked at the flowering stage for endophytic bacteria (Shannon index) and at the bud formation stage for rhizosphere soil bacteria, with persistent core taxa (Bacteroides in endophytic bacteria, Pseudarthrobacter in rhizosphere soil bacteria) dominating across stages. Functional predictions revealed stable core metabolic pathways, with stage-specific enrichments of glycolysis or gluconeogenesis at late developmental stages. These results provide novel ecological insights into the spatiotemporal dynamics of bacterial communities across different stages of GE seed formation, highlighting the distinct ecological strategies of endophytic and rhizosphere soil bacteria during the reproductive development of the plant. Full article

In vitro cultured plant calli, induced through dedifferentiation, are colonized by diverse endophytes. Most of these endophytes, being substantially inherited from the mother plant and highly dependent on the host’s internal ecological niche, are termed host-dependent endophytes (HDEs). Due to their close association with their hosts, HDEs exhibit heritable characteristics. However, our current understanding of plant HDEs and their effects on the host plant is limited. In this study, we characterized the composition and potential functions of the endophytic microbiota in grapevine calli derived from different varieties and organs corresponding to Cabernet Sauvignon berry flesh (CF), Rose Honey berry flesh (RF), and Rose Honey shoot tip (RS) using high-throughput sequencing and bioinformatics. Our results showed that the genotype and organotype of the explant did not affect the alpha diversity of endophytes in callus, but were associated with differences in beta diversity and community structure of the endophytic microbiota. Different types of grapevines calli inherited distinct endophytes from their mother plants, whereas sharing a conservative core endophytic microbiota consisting of a small number of amplicon sequence variants (ASVs) with high relative abundances (bacteria: 38 ASVs ranging from 79 to 92%; fungi: 9 ASVs ranging from 32 to 58 prediction analyses using revealed conserved functional traits of the endophytic microbiota across callus types, including a core suite of bacterial adaptive phenotypes, stable central metabolism dominated by oxidative phosphorylation, and uniformly structured fungal communities dominated by saprotrophs and pathotrophs, while consistently containing yeast-form fungi. Although minor variations such as elevated trait abundance in the CF group were noted, no statistically significant functional divergence was observed, demonstrating that the endophytic microbiota of grapevine callus maintains a conserved functional profile across different types. Collectively, this study provides a methodological framework for investigating plant HDEs and offers new insights into host-endophyte interactions at the cellular level. Full article

This study aimed to separate and characterize compounds from Aspergillus tubingensis ZMGR14. The antifungal activities of monomer compounds and the ethyl acetate (EtOAc) layer from the fermented liquor of A. tubingensis were isolated, purified and structurally identified. The EtOAc layer from the fermented liquor showed significant antifungal activity against Fusarium oxysporum and Alternaria alternata with IC₅₀ values of 273.8 and 330.7 μg·mL⁻¹, respectively. The EtOAc extract was further purified by column chromatography and recrystallization to yield six compounds. Antifungal trials showed that Cyclo-(L-Pro-D-Leu) (5) exhibited the highest inhibition against A. alternata and F. oxysporum, with an IC₅₀ value of 48.1 and 232.7 μM, respectively, and cyclo-(L-Pro-L-Leu) (6) displayed moderate antifungal activity against Alternaria solani, with an IC₅₀ value of 493.4 μM. The results suggest that the EtOAc extract of ZMGR14 and its bioactive compounds hold promise as environmentally friendly microbial fungicides. Full article

Marine endophytic fungi inhabit the internal tissues of seaweed, seagrass, and mangroves without causing harm. These fungi are known to produce extracellular enzymes, including proteases and cellulases, which play crucial roles in various biological processes and have potential applications in diverse industrial sectors. This study aimed to screen the enzymatic potential of marine endophytic fungi, identify selected isolates, and characterize their enzyme activities. A total of 20 fungal isolates were obtained, comprising 16 isolates from seaweed, three from seagrass, and one from mangrove leaves, collected from the coastal areas of the Seribu Islands (Jakarta), Sukabumi (West Java), Nusa Dua (Bali), and the Buton Islands (Southeast Sulawesi). Screening results showed that 50% of the isolates exhibited proteolytic activity on skim milk agar, while 40% demonstrated cellulolytic activity on carboxymethylcellulose (CMC) agar. Two isolates with the highest clear zone indices for protease and cellulase activity were identified as Penicillium citrinum and Fomitopsis sp., with distinct morphological characteristics including velvety colonies and filamentous hyphal structures. The specific activities of the protease and cellulase were 5475.42 ± 2724.25 U/mg protein and 620.77 ± 607.71 U/mg protein, respectively, indicating high catalytic potential. Full article

Endophytic fungi are promising sources of novel antiviral compounds, and the crude extract from Alternaria alternata PO4PR2 has previously shown anti-HIV-1 activity. This study evaluated its efficacy against integrase strand-transfer inhibitor (INSTI)-resistant HIV-1 and its mechanism of action. Key resistance mutations (Y143H, G118R, N155H, and R263K) were introduced into the HIV-1 pNL4.3 clone via site-directed mutagenesis and confirmed through Sanger sequencing. Viral infectivity was assessed in TZM-bl cells, while cytotoxicity was measured using an MTT assay. Antiviral activity was determined through a luciferase-based assay, and integration inhibition was evaluated using integrase activity assays and Alu-gag nested PCR. The extract demonstrated potent inhibition of resistant mutants, with low IC₅₀ values (0.02971–0.1652 μg/mL), and showed minimal cytotoxicity (CC₅₀ = 300 μg/mL), maintaining over 80% cell viability. It inhibited integrase activity by 67%, specifically targeting the strand-transfer step, and significantly reduced integrated viral DNA. Molecular docking of 14 compounds identified coumarin derivatives as key bioactive metabolites, exhibiting mutation-tolerant binding within the integrase catalytic pocket. Overall, these findings highlight PO4PR2 as a promising source of compounds for developing new therapies targeting drug-resistant HIV-1 integrase. Full article

Dark septate endophytes (DSE) and ericoid mycorrhizal fungi (ERMF) are employed to augment the abiotic stress resistance of fruits. However, their potential functions in enhancing the drought resistance of blueberry, an economically important fruit, remain unclear. Thus, this study aims to identify optimal inoculation combinations to enhance the drought resistance of blueberry seedlings. Specifically, the effects of single and dual inoculations with DSE (Cladosporium cladosporioides, D79) and ERMF (Oidiodendron citrinum, N12) on seedling physiology and metabolism were explored under varying drought conditions. The results showed that dual inoculation significantly improved leaf physiological characteristics. Under severe drought stress, the 1:2 DSE:ERMF ratio (D1N2) notably increased leaf relative water content (RWC) and reduced electrolyte leakage by up to 42.1% compared with the non-inoculated control. Dual inoculation also significantly decreased malondialdehyde (MDA) content, with the smallest increase observed in D1N2. Regarding antioxidant enzymes, dual inoculation sustained higher superoxide dismutase (SOD) activity under moderate drought and minimized the decline in SOD activity under severe drought (the lowest decrease was 36.4% in D1N2 versus 56.7% in CK). Moreover, the antioxidant losses under drought stress were reduced by upregulating various metabolic processes, especially the biosynthesis of phenylalanine, tyrosine, and tryptophan. A comprehensive evaluation suggested that inoculation with a 1:2 mixture of DSE and ERMF most effectively improved blueberry drought resistance, primarily by enhancing water and metabolite supply and stimulating the antioxidant defenses. Full article

An isolate of Peniophora lycii was obtained from grapevine, and its interactions with several grapevine-associated fungi and the plant host were examined. The fungus was not able to infect intact leaves, but necrotized the margins of foliar disks and caused necrosis and white rot in woody tissues. In dual cultures, P. lycii and Aureobasidium pullulans showed mutual antagonism. Mycoparsitism of P. lycii was observed on epiphytic Botrytis cinerea, Alternaria sp., and endophytic Botryosphaeria dothidea interaction partners. In contrast, P. lycii showed trophic growth towards endophytic Phaeomoniella chlamydospora without any signs of harmful interactions. Dual inoculations of foliar disks with epiphytic fungi revealed no effects of fungal interactions on necrosis development by pathogens and verified mycoparasitic interactions in planta. Co-infection assays of cuttings with endophytic pathogen fungi showed cumulative effects of fungal interactions on wood symptom expression, with the exclusive contribution of P. lycii to white rot development. In addition to providing the first isolation of P. lycii from grapevine and the description of its mycoparasitic behavior, the present study suggests that the fungus may act as an opportunistic grapevine pathogen, probably as a secondary colonizer in trunk diseases. The observed dual host preference may allow trunk disease pathogens to initially feed on fungi, followed by damage to the grapevine. This may be in connection with the exceptionally long latency of these syndromes. Full article

Background: Endophytic fungi are known for diverse bioactive compounds with immense potential for agriculture and medicinal applications. Coniochaeta dendrobiicola isolated from the roots of Dedrobium longicornu was investigated for its antioxidant and metabolite composition. The present study compares the antioxidant properties, flavonoid and phenolic contents and metabolic profiles of broth and mycelium extracts. The broth and mycelium extracts were tested for their antioxidant potential using DPPH, while the total flavonoid and phenolic contents were measured using a UV–VIS spectrophotometer. High-resolution mass spectrometry (HRMS) revealed a markedly richer and more diverse metabolite profile of putatively annotated compounds in the broth extract compared with the mycelium fraction. The broth extract exhibited significantly higher antioxidant activity and flavonoid and phenolic contents, correlating with the presence of diverse bioactive compounds, including indole derivatives, flavonoids, phenolic acids, quinoline derivatives, and antifungal metabolites. Notably, several indole-related and phenolic compounds detected predominantly in the broth are known for antioxidant, antimicrobial, and plant growth-promoting properties. These findings indicate that C. dendrobiicola actively secretes biologically relevant secondary metabolites into the extracellular medium, highlighting its potential for agricultural and pharmaceutical applications. Full article

Indole-3-acetic acid (IAA) is a central auxin regulating plant growth and developmental plasticity, including cell division, elongation, vascular differentiation, and root architecture. Beyond plants, many fungi—including endophytic fungi that reside within plant tissues without visible disease symptoms—can synthesize IAA and thereby modulate plant performance and plant–fungus interactions. However, fungal IAA biosynthesis remains less resolved than bacterial or plant pathways, and mechanistic evidence is uneven across taxa. This review summarizes recent (2020–2025) advances in IAA-producing endophytic fungi, the main proposed biosynthetic routes and intermediates, and methodological considerations for attributing IAA production to the fungal partner. The reported associations of fungal IAA with beneficial interactions are then discussed, including growth promotion, stress tolerance, and interaction-mediated changes in the root system’s architecture, with emphasis on the concentration- and context-dependent nature of plant responses. Overall, fungal IAA is associated with diverse plant–fungus interactions, as discussed in this review. Full article

Pinus cembroides is among the pine species best adapted to arid and semi-arid ecosystems in the Americas, and its potential distribution is projected to expand under climate change. However, the success of this expansion will depend on belowground processes, particularly the role of soil fungal communities, which in subtropical forests are key for nutrient cycling and plant resilience to environmental stress. Yet their vertical stratification and responses to forest management remain poorly understood, especially in semi-arid systems. Here, we characterized fungal communities from mineral soil and litter associated with P. cembroides across a forest management gradient (mature forests, disturbed stands, and pine plantations) at the southern limit of the species’ distribution. We evaluated the influence of climatic, edaphic, vegetation structure, and microbial activity variables (soil moisture, precipitation, pH, tree density, vegetation cover, temperature and extracellular enzyme activity) on fungal community composition. We found strong vertical stratification between litter and mineral soil. When both substrates were analyzed together as an integrated soil profile, forest condition had no significant effect on alpha diversity; however, substrate-specific analyses revealed higher richness in mineral soil of mature forests compared to disturbed and plantation sites, while litter communities showed no significant differences among conditions. Litter communities were characterized by saprotrophic and endophytic fungi, whereas mineral soil communities were enriched in ectomycorrhizal and other root-associated taxa. Distance-based redundancy analysis indicated that fungal community composition was primarily associated with moisture content, precipitation, pH, tree density, and carbon-degrading enzyme activity. These results highlight the importance of substrate differentiation and environmental gradients in shaping fungal communities in semi-arid pine forests, and provide a baseline for understanding how management and climate change influence soil fungal diversity and ecosystem functioning. Full article

Drought and nitrogen deposition are major drivers of global change that can influence forest ecosystems and plant–microbe interactions, yet their combined effects on endophytic fungal communities and the roles of dark septate endophytes (DSE) remain unclear. In this study, we examined the diversity of culturable endophytic fungi in leaves and roots of Quercus dentata under different drought and nitrogen deposition treatments and evaluated the functional effects of representative DSE strains on host growth and physiology. A total of 1488 fungal isolates were obtained, revealing distinct organ-specific community patterns. Root-associated communities showed greater compositional stability across treatments, whereas leaf communities were more responsive to environmental variation. Severe drought reduced the dominance of several genera and promoted community restructuring, while nitrogen deposition had contrasting effects on α-diversity in leaves and roots. Beta diversity analyses indicated significant interaction effects between drought and nitrogen addition. Inoculation with four DSE strains produced strain-dependent effects on plant biomass, photosynthesis, water-use efficiency, physiological traits, and nutrient contents. These results indicate that drought and nitrogen deposition jointly influence endophytic fungal communities and that functional differences among DSE strains may affect host responses to combined stress. Full article

The rapid emergence of multi-drug resistant (MDR) bacteria has become a major health concern, driving the need to identify new antimicrobial resources. Recently, endophytes, inhabiting in internal tissues of medicinal plants, have drew important interest from the scientific community, as reservoirs of bioactive metabolites. Numerous studies highlight the symbiotic relationship between plants and their endophytes, in which these microorganisms produce antimicrobial compounds, helping the host plant’s defense against pathogens. Plantago major (commonly known as plantain) is widely recognized for its therapeutic properties, especially for its antimicrobial properties. In this study, endophytic fungi were isolated from Plantago major, morphologically characterized and identified using ITS sequencing. Their antibacterial activity was assessed using the agar diffusion assay. In total, 21 endophytic fungal isolates were obtained from different plant tissues, including leaves, stems, roots, and flowers. Antibacterial assays against methicillin-resistant Staphylococcus aureus (MRSA) were investigated on PDA, SDA, and CDA media. Amongst the isolates, nine strains (MD-H1, MD-L1, MD-L2, MD-L3, MD-L4, MD-L5, MD-R1, MD-T1, MD-T2, and MD-T10) showed medium to strong antibacterial effects, with inhibition zones exceeding 15 mm. The result suggests that endophytic fungi associated with Plantago is a valuable source of anti-MRSA compounds. Further work will focus on identifying the secondary metabolites responsible for this activity and elucidating their chemical structures, providing a basis for the development of new potent antibiotic agents. Full article

Subterranean termites, particularly Odontotermes obesus, cause severe damage to forest nurseries and plantations in arid and semi-arid ecosystems. This study demonstrates the dual functional role of endophytic entomopathogenic fungi, Metarhizium anisopliae and Beauveria bassiana, in termite suppression and induction of plant defense responses. Laboratory bioassays revealed significantly higher virulence of M. anisopliae, with a lower LT₅₀ (lethal time required to cause 50% mortality) of 33.1 h compared to B. bassiana (46.7 h), a steeper probit slope (5.4 ± 0.3), and strong model fit (R² = 0.95), indicating rapid and synchronized mortality. Endophytic colonization varied across host species and application methods, with soil incorporation consistently outperforming foliar inoculation. Maximum colonization (82.5%) was recorded in Tecomella undulata and exceeded 80% in Azadirachta indica under M. anisopliae. Biochemical analyses revealed significant increases in protein (up to 3.5 mg g⁻¹), phenols (3.7 mg g⁻¹), and tannins (2.7 mg g⁻¹). Activity of defense enzymes was significantly enhanced, with catalase reaching 263.5 U mL⁻¹, while Phenylalanine ammonia-lyase and Tyrosine ammonia-lyase exceeded 170 and 198 U mL⁻¹, respectively, indicating activation of antioxidant and phenylpropanoid pathways. Molecular docking analysis further revealed strong interactions between fungal metabolites and termite cellulase, with Bassianin (−8.4 kcal mol⁻¹) and Tenellin (−8.1 kcal mol⁻¹) showing the highest binding affinities. These findings highlight the combined biochemical and molecular mechanisms underlying fungal-mediated termite suppression and plant defense induction, and future research should prioritize transcriptomic validation, rhizosphere microbiome interactions, formulation optimization, and long-term multi-location field evaluation to support sustainable termite management strategies. Full article

Background/Objectives: Endophytic fungi represent an alternative source for resveratrol (RES) production. The present study aims to utilize mycoendophytic-derived resveratrol as a reducing agent for the synthesis of silver nanoparticles (AgNPs), in addition to further assay the cytotoxic activity of a RES-conjugated nanocarrier system toward human epidermoid carcinoma A-431 cells. Methods: Alternaria alternata AUMC 16209 was isolated from the stem of grapevine Vitis vinifera L. cultivar prime. Strain identification was achieved through morphological and molecular characterization using ITS sequencing. A. alternata AUMC 16209 exhibited RES production capability upon cultivation on PDB medium for seven days with a total of 8.25 mg/L as determined by HPLC. The crude RES was purified using flash chromatography followed by structure elucidation through ¹H and ¹³C NMR analyses. The purified RES was used for green synthesis of nanoparticles, acting as a reducing agent for silver ions. Results: Stable RES-AgNPs were fabricated at particle sizes ranging from 25 to 47 nm. RES-AgNPs observed a plasmon resonance absorption band at 415 nm with a negative zeta potential value of −38.5 mV. The crystalline structure of RES-AgNPs was addressed through X-ray diffraction analysis. FT-IR spectroscopy confirms the involvement of the functional –OH group and the aromatic C=C bond in the reduction and stabilization process. RES-AgNPs was more efficient to inhibit the cellular proliferation of human epidermoid carcinoma A-431 cells compared to RES alone. Conclusions: This report introduces for the first time an endophytic A. alternata as a sustainable source for RES production and emphasizes its potential for green synthesis of stable AgNPs with promising cytotoxic activity. Full article

Three novel alkaloids, penicitrioids A–C (1–3), and two known compounds (4–5) were isolated from the ethyl acetate (EtOAc) extract of the solid fermentation of Penicillium citrinum VDL118, an endophytic fungus harbored in the leaves of Vaccinium dunalianum Wight (Ericaceae), a perennial evergreen shrub native to the southwestern regions of China, Myanmar, and Vietnam. Compounds 1 and 2 are novel pyridine alkaloids characterized by an unprecedented dihydrofuro[3,4-c]pyridine core, while 3 features a distinct pyrrolo[3,4-c]pyridine framework. Their structures were unambiguously established by comprehensive spectroscopic analysis and electronic circular dichroism (ECD) calculations. In vitro antifungal assays revealed that compounds 1–5 exhibited moderate to potent inhibitory effects against five tested phytopathogenic fungi, with minimum inhibitory concentrations (MICs) ranging from 3.1 to 100 μg/mL. Notably, four of them (1–4) displayed broad-spectrum and potent activity against Gloeophyllum trabeum, Coriolus versicolor, Fusarium solani, and Botrytis cinerea, with MIC values as low as 3.1–12.5 μg/mL. Furthermore, a plausible biosynthetic pathway for compounds 1–3 was proposed. Full article