Microbiome Dynamics and Ecological Mechanisms Under Urbanization and Climate Change

A special issue of Diversity (ISSN 1424-2818).

Deadline for manuscript submissions: 30 May 2026 | Viewed by 2

Special Issue Editors


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Guest Editor
Center for the Planetary Health and Innovation Science (PHIS), The IDEC Institute, Hiroshima University, 1-3-2 Kagamiyama, Higashi-Hiroshima City 739-8511, Hiroshima, Japan
Interests: microbial genomics; metagenomics; microbial ecology; NTM; environmental infections
Special Issues, Collections and Topics in MDPI journals

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Guest Editor Assistant
The IDEC Institute, Hiroshima University, Higashi-Hiroshima City 739-8511, Hiroshima, Japan
Interests: microbiomes; metagenomics; ecological forces; co-occurrence network; public health

Special Issue Information

Dear Colleagues,

Urbanization and global climate change are reshaping both natural and built environments, driving profound shifts in microbial ecosystems. As cities expand and environmental conditions become increasingly unpredictable, microbial communities in air, water, soil, and indoor environments are becoming increasingly exposed to anthropogenic stressors like pollution, urban heat islands, and biodiversity losses. These disruptions affect ecosystem functions and human health—through altered microbial networks, antimicrobial resistance, and links to allergic or infectious diseases. Understanding how urban development influences microbiomes is crucial for sustainable planning and One Health-based public health strategies.

Microbial communities form the unseen majority of Earth’s biodiversity and are critical to ecosystem functions like biogeochemical cycling and environmental resilience. Advances in sequencing, metagenomics, and ecological modeling have opened new avenues for exploring their diversity and functional traits under stress. Nevertheless, key questions remain regarding how microbes adapt to urban infrastructure, shifting climates, and human behavior. Addressing these requires cross-disciplinary and multi-scalar research approaches.

This Special Issue aims to bring together cutting-edge studies focusing on microbiome structure, ecological functions, and dynamic mechanisms under changing environments including nature and built environments. By highlighting microbial diversity, functional gene expression, and health-related implications, we aim to foster global collaboration and innovative solutions in urban microbial ecology and One Health.

Prof. Dr. Fumito Maruyama
Guest Editor

Dr. Yue Yin
Guest Editor Assistant

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Diversity is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2100 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • microbial diversity
  • microbiome function
  • climate change
  • urban ecosystems
  • ecophysiological mechanisms

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Published Papers

This special issue is now open for submission.
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