Search Results (2,616)

Endophytes are a type of microorganism that lives in harmony with plants, playing a significant role in promoting the growth of the host and enhancing the host’s stress resistance. Understanding the ecological functions of root endophytic fungi and screening functional strains can effectively alleviate the stress conditions of crops. In this study, endophyte 1R13 was isolated from the roots of rice. Through morphological observation and five-gene combined phylogenetic analysis, it was identified as Bussabanomyces oryzae (B. oryzae), which was proposed as a new species, Bussabanomyces oryzae nov. The colonization pattern of B. oryzae was mainly through invasion of the rice roots, entering the epidermal cells and then the cortical cells, and finally reaching the vascular bundle cells. In the co-culture assays with rice, B. oryzae can promote the growth of rice, increasing its growth volume by approximately 23% and its fresh weight by 52%. Meanwhile, it could enhance the stress resistance of rice, mainly manifested as increasing the ability of rice leaves to resist rice blast and improving the survival rate of transplanted seedlings in the field. Full article

Catalpol, one of the primary bioactive components in Rehmannia glutinosa, is an iridoid glycoside with significant pharmacological activities. To expand the microbial sources of catalpol, endophytic bacteria were isolated from R. glutinosa (cultivated in Jiaozuo, China) using the dilution plating method combined with vanillin–sulfuric acid colorimetric assay. High-performance liquid chromatography (HPLC) and liquid chromatography–mass spectrometry (LC-MS) were employed for screening and identification. The isolated strain was identified through morphological characterization and 16S rDNA gene sequence analysis, while single-factor experiments coupled with response surface methodology were utilized to optimize its fermentation conditions. Results indicated that the strain DH14 formed circular, cream-white, opaque colonies and was Gram-negative. It was identified as Brevundimonas olei. The optimal fermentation conditions were determined to be 190 rpm, pH 7.6, 31 °C, and 0% NaCl. Meanwhile, the results revealed a positive correlation between the pH of the fermentation broth and catalpol production. Under the optimized conditions, the maximum catalpol yield reached 0.142 mg/mL after 3 days of cultivation. This study provides a promising microbial resource and optimized fermentation parameters for the microbial production of catalpol. Full article

Brassicaceae plants are generally considered non-mycorrhizal; however, recent studies have challenged this non-host status, suggesting occasional colonization during reproductive stages or by overlooked fungi such as Mucoromycotina Fine Root Endophytes (MFRE). To re-evaluate the non-host status of Brassicaceae, we cultivated five Brassicaceae species, including rapid life cycle Brassica rapa (Fast plants) using field soil containing both Glomeromycotina Arbuscular Mycorrhizal Fungi (G-AMF) and MFRE. To ensure inoculum potential, a co-planting system with lettuce (Lactuca sativa) as a nurse plant was employed. While lettuce roots were rapidly colonized by both G-AMF and MFRE, no mycorrhizal colonization was observed in any Brassicaceae roots throughout their entire life cycle, from vegetative growth to flowering and seed maturation in Fast plants. Furthermore, co-planting with Brassicaceae did not significantly affect the mycorrhizal colonization or shoot phosphorus concentrations of the neighboring lettuce. These results demonstrate that Brassicaceae plants maintain a robust non-host status against both G-AMF and MFRE. Moreover, they function as “neutral non-hosts” that do not disrupt the symbiotic networks of neighboring plants. This characteristic reinforces the value of Brassicaceae in sustainable crop rotation systems. Full article

Fungal endophytes are microorganisms that inhabit plant tissues without causing disease and emerge as critical mediators of plant stress tolerance, nutrient acquisition, and ecosystem resilience under diverse climate change scenarios. Their unique position within the host allows them to modulate physiological responses more closely than external microbiota. This review explores how endophytic fungi contribute to plant adaptation under climate-induced stresses such as heat, salinity, drought, pollution, and nutrient limitation, with a focus on molecular crosstalk, functional trait modules, and metabolic trade-offs. Key findings emphasize multilayered signaling systems, including MAMP/DAMP recognition, phytohormone regulation, immune tuning, ROS dynamics, and effector deployment, while emerging mechanisms such as cross-kingdom RNA and extracellular vesicle (EV)-mediated exchange are discussed as promising but currently limited in empirical validation within many endophytic systems. Endophytes also enhance nutrient exchange through conditional carbon-for-benefit trade and may shape rhizosphere microbiota and soil activities through plant-mediated inputs. Integrative multi-omics approaches provide predominantly correlational insights into the mechanistic basis of these effects, linking molecular function to ecosystem and community outcomes. These insights have potential applications in climate-resilient agriculture, phytoremediation, and ecosystem restoration; however, their large-scale implementation requires further field-based validation and context-specific assessment. Future priorities should focus on trait-based selection, ecological modeling, and biosafety evaluation to translate microbial functions into reliable field-level strategies that support sustainable crop performance under accelerating environmental stress. Full article

The green peach aphid, Myzus persicae (Sulzer), is a globally important agricultural pest whose management is increasingly challenged by widespread insecticide resistance, prompting interest in alternative and sustainable control strategies such as endophytic fungi. This study evaluated the effects of two endophytic fungi, Trichoderma harzianum and Chaetomium cupreum, applied individually or as a 1:1 mixture, on the population ecology of M. persicae feeding on capia-type red pepper (Capsicum annuum L.). Aphid development, survival, and reproduction were assessed using age-stage, two-sex life table analysis. Contrary to expectations, T. harzianum significantly enhanced aphid population growth, resulting in a higher intrinsic rate of increase (r = 0.42 d⁻¹), finite rate of increase (λ = 1.52 d⁻¹), and net reproductive rate (R₀ = 87.67 offspring) compared to the Control (r = 0.32 d⁻¹, λ = 1.37 d⁻¹, R₀ = 42.90 offspring). The Mixture treatment also increased population parameters, whereas C. cupreum showed limited effects on aphid life table traits. Population projections indicated that T. harzianum treatment could produce aphid populations approximately 380 times larger than the Control after 60 days. These results suggest that T. harzianum may improve host plant quality in ways that indirectly favor M. persicae. The findings highlight the importance of evaluating plant–fungus–herbivore interactions before incorporating endophytic fungi into integrated pest management programs. Full article

Saline–alkali stress is a severe abiotic factor that limits plant growth and development. Endophytic bacteria can improve plant tolerance to such stress through various mechanism, including osmoregulatory substance accumulation and antioxidant enzyme activity. In this study, four saline–alkali-tolerant endophytic strains, designated SYM-2, SYM-4, SYM-9, and SYM-15, were isolated from the roots of alfalfa grown in saline–alkali soil. Though 16S rDNA sequencing, morphological observations, and physiological–biochemical characterization, the strains were identified as closely related to Bacillus cereus, B. thuringiensis, B. halotolerans, and Pantoea agglomerans, respectively. These strains demonstrated the ability to produce 1-aminocyclopropane-1-carboxylate (ACC) deaminase, siderophores, and indole-3-acetic acid (IAA), as well as solubilizing phosphorus. Under saline–alkali conditions, inoculation with these strains significantly increased alfalfa growth parameters. Plant height increased by 4.07–33.90% and root length by 7.49–27.94%, and fresh and dry weight (both above and below ground) increased compared with the control. Strain SYM-15 showed the highest promoting effects, increasing plant height by 33.90%, root length by 27.94% and shoot dry weight by 59.26%. Additionally, root activity increased by 11.23–40%, proline content by 19.09–129–87%, and soluble protein by 7.71–42.49%, and the activities of catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD) were significantly elevated across treatments. At the same time, inoculation reduced the levels of hydrogen peroxide (H₂O₂), superoxide anion (O₂⁻), and malondialdehyde (MDA). Compared with the control and other treatments, including SYM-9, the peroxidase activity and superoxide dismutase activity of alfalfa significantly increased after the SYM-15 treatment, while hydrogen peroxide content, phosphorus content, and neutral detergent fiber and acid detergent fiber contents decreased (p < 0.05). Therefore, SYM-15 plays an important role in promoting growth and represents a promising, high-quality strain resource for the large-scale development of microbials aimed at improving alfalfa tolerance under saline–alkali conditions. Full article

The endangered ethnomedicinal plant Euchresta tubulosa harbors a valuable community of endophytic fungi, demonstrating significant potential for biotechnological applications. Endophytic fungi were isolated from E. tubulosa and identified to characterize their secondary metabolites and extracellular enzyme activities. Endophytic fungi were isolated from E. tubulosa using tissue explant culture and identified by morphological and molecular (ITS) analysis. The chemical profiles of strain fermentation products were analyzed by LC–MS/MS, while extracellular enzyme production (cellulase, protease, amylase) was assessed through chromogenic plate assays and liquid fermentation. The results indicated that a total of 55 endophytic fungi were isolated from E. tubulosa, assigned to 17 genera. Among these, three genera (Colletotrichum, Fusarium, and Penicillium) constituted the dominant groups, while four strains (including three novel species) represented potential new taxa. LC–MS/MS analysis revealed that fermentation products of the three novel endophytic fungal species contained bioactive compounds such as flavonoids and alkaloids; furthermore, bioactivity assays indicate that they exhibited significant degrees of antibacterial and antioxidant activity. Extracellular enzyme assays demonstrated that three E. tubulosa-derived endophytic strains exhibited multi-hydrolytic enzyme production capabilities. Notably, strain ETG-1-2-1 showed the highest amylase and cellulase activities (10.95 U/mL and 9.68 U/mL, respectively), while strain ETXG-1-1-1 displayed the highest protease activity (2.34 U/mL). This study provides the first systematic report on the diversity of endophytic fungi in E. tubulosa, their secondary metabolite profiles, and extracellular enzyme activities, establishing a theoretical foundation for discovering novel bioactive compounds and developing microbial resources, while also highlighting their ecological roles and biotechnological potential. Full article

Sustainable indoor growing management requires biological alternatives that protect against pathogens, preserve fruit quality and minimise chemical inputs in strawberries. We compared the impacts of a four-strain Bacillus consortium (BacMix) and chemical fungicides on two cultivars (cv. Elsanta and cv. Sonsation) by evaluating the metabolite outcomes—the free amino acids (FAAs) in the leaves and the sugars in the fruits. Furthermore, the descriptive shotgun metagenomics provides a functional context for these biochemical traits. The BacMix increased the total FAAs in the leaves and stabilised the fruit sugar profiles, maintaining moderate–high sucrose with controlled glucose and fructose. The chemically treated plants showed significant reductions in both FAAs and sugars. The metagenomic data showed BacMix-related shifts in the microbial functional potential in the leaves, but the biological agent did not affect diversity. An increased representation of genes involved in amino acid biosynthesis (aminoacyl tRNA pathway) and secondary metabolite biosynthesis was observed, along with changes in the relative CAZy signals. The direction of these metagenomic trends aligned with the metabolite outcomes, suggesting that BacMix influences the endophytic microbiome in a way that supports nitrogen-related metabolism and carbohydrate stability during the vegetation period. The cultivar-independent metabolic improvements emphasise the benefits of BacMix and highlight microbiome-based interventions as promising tools for sustainable, chemical-reduced strawberry production. Full article

This study demonstrates that the ericoid mycorrhizal (ERM) fungus RM2 can colonize the non-ericaceous host Malus robusta as a functional endophyte, enhancing drought resilience through an active avoidance strategy. Under drought, inoculation was associated with qualitative changes in root growth patterns, and inoculated seedlings showed a more extensive and branched root appearance compared with non-inoculated controls. This morphological tendency was accompanied by a distinctive physiological state of oxidative priming, characterized by elevated H₂O₂ as a signaling molecule, reduced antioxidant enzyme activity, and a marked shift toward proline-mediated osmotic adjustment. Transcriptomic analysis suggested a molecular basis for these responses: endophytic colonization reprogrammed auxin and brassinosteroid signaling, including the repression of auxin inactivation (GH3) and activation of genes involved in auxin transport (AUX1) and cell wall loosening (TCH4), which is consistent with sustained root growth under drought. Our findings indicate that ERM fungi can transcend traditional host barriers and improve drought performance via integrated oxidative signaling and hormonal regulation, highlighting their potential as cultivable biostimulants for sustainable horticulture. Full article

Endophytic fungi widely colonize plant tissues without causing severe disease, protect hosts from pathogenic microorganisms, and represent a key potential resource for novel biocontrol agents. To explore the biocontrol potential of endophytic Epichloë fungi and their correlation with alkaloids, 12 Epichloë strains were isolated from six different geographic sites of Festuca sinensis, Achnatherum inebrians, and Hordeum brevisubulatum. The antifungal activity of these strains was evaluated against five phytopathogenic fungi (Alternaria alternata, Bipolaris sorokiniana, Curvularia lunata, Fusarium avenaceum, and Drechslera erythrospila) using dual-culture assays, which measured the inhibition of both colony growth and spore germination. Concurrently, the concentrations of ergonovine and ergine were quantified in the liquid cultures of each Epichloë strain. The results showed that 12 Epichloë strains had varying degrees of inhibitory effects on the colony growth and spore germination of five pathogenic fungi. Among these, strain F2 had the highest inhibition rate on the spore germination of B. sorokiniana (87.73%), while strain H3 had the lowest inhibition rate on F. avenaceum (7.89%). The concentrations of ergonovine and ergine were positively correlated with the inhibition rate of pathogenic fungi, but the degree of these correlations varied among different pathogenic fungi. This study provides further evidence for Epichloë-mediated pathogen inhibition and establishes a basis for their development as biocontrol agents in agricultural systems. Full article

Bacterial endophytes isolated from medicinal and wild plant species have recently gained significant attention for their medicinal properties, often closely linked to those of their plant hosts. This study identified two endophytic Bacillus isolates using 16S rRNA sequencing-based phylogeny. The impact of sublethal concentrations (0.5 mg/mL) of cadmium and hydrogen peroxide on metabolite production and bioactivity was also investigated. Phytochemical testing and antimicrobial and antioxidant assays revealed shifts in metabolite production under stress conditions. According to the phylogenetic analysis, Bacillus sp. NV35 and NV1 are respectively related to Bacillus cereus and B. mycoides. Phytochemical screening of methanolic crude extracts from both isolates tested positive for alkaloids, flavonoids, and saponins. Notably, tannins were detected only after cadmium treatment, while steroids were present following exposure to both cadmium and H₂O₂. LC-MS fingerprinting confirmed the presence of several tannins and steroids in treated samples. The untreated crude extracts exhibited an IC₅₀ of ~3 mg/mL with the DPPH assay, which decreased to ~1.5 mg/mL after treatment with cadmium or H₂O₂, demonstrating enhanced antioxidant potential under stress conditions. Additionally, extracts from both treated and untreated bacteria displayed antimicrobial activity against selected bacterial pathogens, with MIC values ranging from 62.5 μg/mL to 125 μg/mL. LC-MS analysis identified various antimicrobial and antioxidant metabolites, including phenoxymethylpenicilloyl, maculosin, (S,R,S)-alpha-tocopherol, 3-indoleacrylate, procyanidin A2, cis-11-eicosenamide, 3-hydroxy-3-phenacyloxindole, and 9-octadecenamide. Full article

The study of volatile organic compounds (VOCs)-mediated plant growth promotion has long focused on various beneficial microbial species. As an important natural source of functional biomolecules, the biological function and potential value of VOCs released by plant pathogenic fungi in regulating plant growth still lack sufficient research, and further exploration is needed. In this study, a phytopathogenic fungus Alternaria alstroemeriae (strain Z84) was isolated from Vaccinium dunalianum for the first time, and the effects of its VOCs on the growth of Arabidopsis thaliana and Nicotiana benthamiana were systematically investigated. The results showed that after Z84 VOCs treatment, multiple phenotypic traits of the two plants were significantly improved, and the chlorophyll content was also markedly increased. Transcriptome analysis showed that a total of 1401 differentially expressed genes (DEGs) were identified in the treated A. thaliana, of which 629 were up-regulated and 772 were down-regulated. KEGG enrichment analysis showed that these DEGs were mainly enriched in photosynthesis-antenna proteins, plant–pathogen interaction, glutathione metabolism, plant hormone signal transduction, flavonoid biosynthesis and photosynthesis-related pathways. Metabolomics analysis revealed that Z84 VOCs treatment significantly changed the metabolic profile of A. thaliana, with the most significant changes in amino acid metabolism-related pathways. It is noteworthy that the plant hormone spectrum of A. thaliana was significantly changed after treatment, and the contents of salicylic acid (SA), abscisic acid (ABA) and gibberellins (GAs) were significantly up-regulated. These results not only demonstrate the potential of Z84-derived VOCs to facilitate plant growth but also provide an important basis for further dissecting the molecular mechanisms of plant–pathogenic fungi interactions. Full article

Biological control agents (BCAs) have emerged as a key strategy to mitigate maize diseases while reducing dependence on synthetic agrochemicals, which pose risks to human health, ecosystems, and microbial diversity. This review synthesizes advances from 63 research articles published between 2020 and 2025, selected through a Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) approach to capture studies with in vitro, greenhouse, or field validation. The analysis highlights major fungal and bacterial threats to maize production and evaluates BCAs, including Bacillus, Trichoderma, Streptomyces, and entomopathogenic or endophytic microorganisms, tested across multiple experimental levels. Results show that many agents demonstrate strong antagonism under controlled conditions, promoting plant growth, reducing pathogen incidence, and lowering mycotoxin contamination. Field trials, however, reveal inconsistent performance due to environmental variability, formulation instability, and incomplete understanding of strain-specific mechanisms. Emerging approaches such as microbial consortia, metabolite-based biocontrol, biochar–microbe combinations, and evaluations under dual-stress conditions offer promising avenues to improve reliability and expand applicability. Overall, the review underscores that although microbial biocontrol holds substantial potential for sustainable maize protection, progress toward scalable implementation requires integrating omics-based characterization, optimized formulations, genotype-specific evaluations, and multi-season field trials to bridge the gap between laboratory efficacy and field performance. Full article

Cool-season (C3) forage grasses are a cornerstone of temperate grassland systems, where improving productivity, nutritive value, and stress resilience is essential for sustainable forage production. In this context, plant growth-promoting microorganisms (PGPMs) have gained increasing attention as potential alternatives or complements to mineral and organic fertilization in grassland management. This review synthesizes current knowledge on the role of bacterial and fungal PGPM in enhancing the growth, nutrient use efficiency, and stress tolerance of C3 forage grasses, with particular emphasis on species of the genus Lolium. Available evidence indicates that PGPMs can substantially improve biomass production and plant performance under both optimal and stress conditions through a range of direct and indirect mechanisms. These include phytohormone production, nitrogen fixation, phosphate solubilization, as well as the activation of antioxidant defense systems and stabilization of plant water relations under stress. While Lolium perenne L. and Lolium multiflorum Lam. remain the most extensively studied model species, comparable growth-promoting responses have also been reported for Dactylis glomerata L., Festuca species, and Festulolium hybrids. Increasing attention is being directed toward bacterial and fungal endophytes, which may provide more persistent physiological benefits due to their close association with plant tissues. However, PGPM effects are often strongly species-, genotype-, and environment-dependent, particularly in complex grassland systems. Overall, PGPMs represent a promising tool for sustainable grassland management, although their effective application will require long-term field studies conducted under realistic meadow and pasture conditions. Full article

Armillaria solidipes, the causal agent of Armillaria root rot, poses a severe and persistent threat to poplar forest plantations. This study evaluated the biocontrol efficacy of the endophytic bacterium Bacillus velezensis BY6 against this pathogen and elucidated its multimodal mechanisms of action. BY6 application significantly reduced disease severity by 37.19% at 30 days post-treatment. 16S rRNA (V3–V4) microbiome analysis revealed that BY6 reshaped both the rhizosphere and phyllosphere bacterial communities, consistently enriching beneficial taxa, including Pantoea ananatis and members of Acidobacteria, while suppressing opportunistic groups. Concurrently, BY6 activated systemic defenses in poplar, evidenced by enhanced activities of key enzymes PAL and POD, and the upregulated expression of SA/JA pathway marker genes (PR1, JAZ, and COI1), coupled with the downregulation of the auxin transporter gene AUX1. These data indicate that the biocontrol efficacy of B. velezensis BY6 was mediated by a dual mechanism: the modulation of both rhizospheric and phyllospheric bacterial communities, direct elicitation of systemic defense pathways in poplar, which synergistically enhanced resistance against A. solidipes. Full article