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Search Results (277)

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Keywords = drought-tolerant maize

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17 pages, 5798 KiB  
Article
Microbial Allies from the Cold: Antarctic Fungal Endophytes Improve Maize Performance in Water-Limited Fields
by Yessica San Miguel, Rómulo Santelices-Moya, Antonio M. Cabrera-Ariza and Patricio Ramos
Plants 2025, 14(14), 2118; https://doi.org/10.3390/plants14142118 - 9 Jul 2025
Viewed by 363
Abstract
Climate change has intensified drought stress, threatening global food security by affecting sensitive crops like maize (Zea mays). This study evaluated the potential of Antarctic fungal endophytes (Penicillium chrysogenum and P. brevicompactum) to enhance maize drought tolerance under field [...] Read more.
Climate change has intensified drought stress, threatening global food security by affecting sensitive crops like maize (Zea mays). This study evaluated the potential of Antarctic fungal endophytes (Penicillium chrysogenum and P. brevicompactum) to enhance maize drought tolerance under field conditions with different irrigation regimes. Drought stress reduced soil moisture to 59% of field capacity. UAV-based multispectral imagery monitored plant physiological status using vegetation indices (NDVI, NDRE, SIPI, GNDVI). Inoculated plants showed up to two-fold higher index values under drought, indicating improved stress resilience. Physiological analysis revealed increased photochemical efficiency (0.775), higher chlorophyll and carotenoid contents (45.54 mg/mL), and nearly 80% lower lipid peroxidation in inoculated plants. Lower proline accumulation suggested better water status and reduced osmotic stress. Secondary metabolites such as phenolics, flavonoids, and anthocyanins were elevated, particularly under well-watered conditions. Antioxidant enzyme activity shifted: SOD, CAT, and APX were suppressed, while POD activity increased, indicating reprogrammed oxidative stress responses. Yield components, including cob weight and length, improved significantly with inoculation under drought. These findings demonstrate the potential of Antarctic endophytes to enhance drought resilience in maize and underscore the value of integrating microbial biotechnology with UAV-based remote sensing for sustainable crop management under climate-induced water scarcity. Full article
(This article belongs to the Special Issue Plant-Microbiome Interactions)
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19 pages, 4387 KiB  
Article
Comparing Chlorophyll Fluorescence and Hyperspectral Indices in Drought-Stressed Young Plants in a Maize Diversity Panel
by Lovro Vukadinović, Vlatko Galić, Andrija Brkić, Antun Jambrović and Domagoj Šimić
Agronomy 2025, 15(7), 1604; https://doi.org/10.3390/agronomy15071604 - 30 Jun 2025
Viewed by 324
Abstract
Progressing climate change necessitates the development of drought-tolerant crops, and understanding the temporal dynamics of genotype x environment interactions (GxE) is crucial. This study aimed to test established phenotyping methods (chlorophyll a fluorescence (ChlF) and hyperspectral (HS) imaging) to investigate the variability in [...] Read more.
Progressing climate change necessitates the development of drought-tolerant crops, and understanding the temporal dynamics of genotype x environment interactions (GxE) is crucial. This study aimed to test established phenotyping methods (chlorophyll a fluorescence (ChlF) and hyperspectral (HS) imaging) to investigate the variability in 165 inbred maize lines’ responses to progressive drought stress. The inbred maize lines were grown under controlled conditions and were challenged with water withholding. Fifteen ChlF and HS indices were measured at three consecutive time points (M1, M2, and M3). Mixed models were employed to estimate the GxT interaction effects via Best Linear Unbiased Predictors (BLUPs) for each variable. A Principal Component Analysis (PCA) performed on the GxT BLUPs from each time point revealed a highly dynamic interaction structure. While the primary axis of GxT variation (PC1) was consistently associated with HI, which is related to plant vigor, across all measurement times, its importance intensified under severe stress (M3). The secondary axis (PC2) shifted markedly over time: after initial variations at M1, it was dominated by GxT effects in specific ChlF parameters related to photosynthetic regulation under moderate stress (M2), before shifting again under severe stress (M3) to reflect the GxT effects on indices potentially related to pigment degradation and other stress indicators. Full article
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20 pages, 2010 KiB  
Article
Machine Learning Analysis of Maize Seedling Traits Under Drought Stress
by Lei Zhang, Fulai Zhang, Wentao Du, Mengting Hu, Ying Hao, Shuqi Ding, Huijuan Tian and Dan Zhang
Biology 2025, 14(7), 787; https://doi.org/10.3390/biology14070787 - 29 Jun 2025
Viewed by 385
Abstract
The increasing concentration of greenhouse gases is amplifying the global risk of drought on crop productivity. This study sought to investigate the effects of drought on the growth of maize (Zea mays L.) seedlings. A total of 78 maize hybrids were employed [...] Read more.
The increasing concentration of greenhouse gases is amplifying the global risk of drought on crop productivity. This study sought to investigate the effects of drought on the growth of maize (Zea mays L.) seedlings. A total of 78 maize hybrids were employed in this study to replicate drought conditions through the potting method. The maize seedlings were subjected to a 10-day period of water breakage following a standard watering cycle until they reached the third leaf collar (V3) stage. Parameters including plant height, stem diameter, chlorophyll content, and root number were assessed. The eight phenotypic traits include the fresh and dry weights of both the aboveground and underground parts. Three machine learning methods—random forest (RF), K-nearest neighbor (KNN), and extreme gradient boosting (XGBoost)—were employed to systematically analyze the relevant traits of maize seedlings’ drought tolerance and to assess their predictive performance in this regard. The findings indicated that plant height, aboveground weight, and chlorophyll content constituted the primary indices for phenotyping maize seedlings under drought conditions. The XGBoost model demonstrated optimal performance in the classification (AUC = 0.993) and regression (R2 = 0.863) tasks, establishing itself as the most effective prediction model. This study provides a foundation for the feasibility and reliability of screening drought-tolerant maize varieties and refining precision breeding strategies. Full article
(This article belongs to the Special Issue Plant Breeding: From Biology to Biotechnology)
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28 pages, 4353 KiB  
Article
Genetic Dissection of Drought Tolerance in Maize Through GWAS of Agronomic Traits, Stress Tolerance Indices, and Phenotypic Plasticity
by Ronglan Li, Dongdong Li, Yuhang Guo, Yueli Wang, Yufeng Zhang, Le Li, Xiaosong Yang, Shaojiang Chen, Tobias Würschum and Wenxin Liu
Int. J. Mol. Sci. 2025, 26(13), 6285; https://doi.org/10.3390/ijms26136285 - 29 Jun 2025
Viewed by 455
Abstract
Drought severely limits crop yield every year, making it critical to clarify the genetic basis of drought tolerance for breeding of improved varieties. As drought tolerance is a complex quantitative trait, we analyzed three phenotypic groups: (1) agronomic traits under well-watered (WW) and [...] Read more.
Drought severely limits crop yield every year, making it critical to clarify the genetic basis of drought tolerance for breeding of improved varieties. As drought tolerance is a complex quantitative trait, we analyzed three phenotypic groups: (1) agronomic traits under well-watered (WW) and water-deficit (WD) conditions, (2) stress tolerance indices of these traits, and (3) phenotypic plasticity, using a multi-parent doubled haploid (DH) population assessed in multi-environment trials. Genome-wide association studies (GWAS) identified 130, 171, and 71 quantitative trait loci (QTL) for the three groups of phenotypes, respectively. Only one QTL was shared among all trait groups, 25 between stress indices and agronomic traits, while the majority of QTL were specific to their group. Functional annotation of candidate genes revealed distinct pathways of the three phenotypic groups. Candidate genes under WD conditions were enriched for stress response and epigenetic regulation, while under WW conditions for protein synthesis and transport, RNA metabolism, and developmental regulation. Stress tolerance indices were enriched for transport of amino/organic acids, epigenetic regulation, and stress response, whereas plasticity showed enrichment for environmental adaptability. Transcriptome analysis of 26 potential candidate genes showed tissue-specific drought responses in leaves, ears, and tassels. Collectively, these results indicated both shared and independent genetic mechanisms underlying drought tolerance, providing novel insights into the complex phenotypes related to drought tolerance and guiding further strategies for molecular breeding in maize. Full article
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12 pages, 1825 KiB  
Article
Selecting Tolerant Maize Hybrids Using Factor Analytic Models and Environmental Covariates as Drought Stress Indicators
by Domagoj Stepinac, Ivan Pejić, Krešo Pandžić, Tanja Likso, Hrvoje Šarčević, Domagoj Šimić, Miroslav Bukan, Ivica Buhiniček, Antun Jambrović, Bojan Marković, Mirko Jukić and Jerko Gunjača
Genes 2025, 16(7), 754; https://doi.org/10.3390/genes16070754 - 27 Jun 2025
Viewed by 265
Abstract
Background/Objectives: A critical part of the maize life cycle takes place during the summer, and due to climate change, its growth and development are increasingly exposed to the irregular and unpredictable effects of drought stress. Developing and using new cultivars with increased [...] Read more.
Background/Objectives: A critical part of the maize life cycle takes place during the summer, and due to climate change, its growth and development are increasingly exposed to the irregular and unpredictable effects of drought stress. Developing and using new cultivars with increased drought tolerance for farmers is the easiest and cheapest solution. One of the concepts to screen for drought tolerance is to expose germplasm to various growth scenarios (environments), expecting that random drought will occur in some of them. Methods: In the present study, thirty-two maize hybrids belonging to four FAO maturity groups were tested for grain yield at six locations over two consecutive years. In parallel, data of the basic meteorological elements such as air temperature, relative humidity and precipitation were collected and used to compute two indices, scPDSI (Self-calibrating Palmer Drought Severity Index) and VPD (Vapor Pressure Deficit), that were assessed as indicators of drought (water deficit) severity during the vegetation period. Practical implementation of these indices was carried out indirectly by first analyzing yield data using a factor analytic model to detect latent environmental variables affecting yield and then correlating those latent variables with drought indices. Results: The first latent variable, which explained 47.97% of the total variability, was correlated with VPD (r = −0.58); the second latent variable explained 9.57% of the total variability and was correlated with scPDSI (r = −0.74). Furthermore, latent regression coefficients (i.e., genotypic sensitivities to latent environmental variables) were correlated with genotypic drought tolerance. Conclusions: This could be considered an indication that there were two different acting mechanisms in which drought affected yield. Full article
(This article belongs to the Special Issue Molecular Breeding and Genetics of Plant Drought Resistance)
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17 pages, 3068 KiB  
Article
Alginate Microencapsulation as a Tool to Improve Biostimulant Activity Against Water Deficits
by David Jiménez-Arias, Sarai Morales-Sierra, Ana L. García-García, Antonio J. Herrera, Rayco Pérez Schmeller, Emma Suárez, Álvaro Santana-Mayor, Patrícia Silva, João Paulo Borges and Miguel Â. A. Pinheiro de Carvalho
Polymers 2025, 17(12), 1617; https://doi.org/10.3390/polym17121617 - 10 Jun 2025
Viewed by 685
Abstract
Climate change is reducing agricultural productivity through altered weather patterns and extreme events, potentially decreasing yields by 10–25%. Biostimulants like pyroglutamic acid can enhance plant tolerance to water stress, but their rapid degradation in the soil limits effectiveness. Encapsulation in alginate matrices promises [...] Read more.
Climate change is reducing agricultural productivity through altered weather patterns and extreme events, potentially decreasing yields by 10–25%. Biostimulants like pyroglutamic acid can enhance plant tolerance to water stress, but their rapid degradation in the soil limits effectiveness. Encapsulation in alginate matrices promises to be a good solution, protecting the compound and enabling controlled release. This study reports, for the first time, that encapsulated pyroglutamic acid markedly enhances drought tolerance in tomato and maize plants. The encapsulation strategy reduces effective concentration by an order of magnitude while significantly improving water use efficiency, photo-synthetic performance, and overall stress resilience. These findings demonstrate that alginate-based encapsulation substantially increases biostimulant uptake and efficacy, providing a novel and efficient strategy to mitigate water stress in crops, with important implications for climate-resilient agriculture. Two encapsulation methods for generating the alginate microcapsules are compared: ionic gelation with Nisco® system and the electrospray technique. Full article
(This article belongs to the Section Polymer Applications)
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25 pages, 2444 KiB  
Review
Climate on the Edge: Impacts and Adaptation in Ethiopia’s Agriculture
by Hirut Getachew Feleke, Tesfaye Abebe Amdie, Frank Rasche, Sintayehu Yigrem Mersha and Christian Brandt
Sustainability 2025, 17(11), 5119; https://doi.org/10.3390/su17115119 - 3 Jun 2025
Cited by 1 | Viewed by 2296
Abstract
Climate change poses a significant threat to Ethiopian agriculture, impacting both cereal and livestock production through rising temperatures, erratic rainfall, prolonged droughts, and increased pest and disease outbreaks. These challenges intensify food insecurity, particularly for smallholder farmers and pastoralists who rely on climate-sensitive [...] Read more.
Climate change poses a significant threat to Ethiopian agriculture, impacting both cereal and livestock production through rising temperatures, erratic rainfall, prolonged droughts, and increased pest and disease outbreaks. These challenges intensify food insecurity, particularly for smallholder farmers and pastoralists who rely on climate-sensitive agricultural systems. This systematic review aims to synthesize the impacts of climate change on Ethiopian agriculture, with a specific focus on cereal production and livestock feed quality, while exploring effective adaptation strategies that can support resilience in the sector. The review synthesizes 50 peer-reviewed publications (2020–2024) from the Climate Change Effects on Food Security project, which supports young African academics and Higher Education Institutions (HEIs) in addressing Sustainable Development Goals (SDGs). Using PRISMA guidelines, the review assesses climate change impacts on major cereal crops and livestock feed in Ethiopia and explores adaptation strategies. Over the past 30 years, Ethiopia has experienced rising temperatures (0.3–0.66 °C), with future projections indicating increases of 0.6–0.8 °C per decade resulting in more frequent and severe droughts, floods, and landslides. These shifts have led to declining yields of wheat, maize, and barley, shrinking arable land, and deteriorating feed quality and water availability, severely affecting livestock health and productivity. The study identifies key on-the-ground adaptation strategies, including adjusted planting dates, crop diversification, drought-tolerant varieties, soil and water conservation, agroforestry, supplemental irrigation, and integrated fertilizer use. Livestock adaptations include improved breeding practices, fodder enhancement using legumes and local browse species, and seasonal climate forecasting. These results have significant practical implications: they offer a robust evidence base for policymakers, extension agents, and development practitioners to design and implement targeted, context-specific adaptation strategies. Moreover, the findings support the integration of climate resilience into national agricultural policies and food security planning. The Climate Change Effects on Food Security project’s role in generating scientific knowledge and fostering interdisciplinary collaboration is vital for building institutional and human capacity to confront climate challenges. Ultimately, this review contributes actionable insights for promoting sustainable, climate-resilient agriculture across Ethiopia. Full article
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22 pages, 6506 KiB  
Article
Long-Term Irrigation Deficits Impair Microbial Diversity and Soil Quality in Arid Maize Fields
by Dongdong Zhong, Renhua Sun, Zhen Huo, Jian Chen, Shengtianzi Dong and Hegan Dong
Agronomy 2025, 15(6), 1355; https://doi.org/10.3390/agronomy15061355 - 31 May 2025
Viewed by 562
Abstract
Water scarcity in arid regions poses a severe threat to agricultural sustainability, necessitating optimized irrigation strategies. This study investigates the cumulative impacts of long-term irrigation deficits on soil quality, microbial diversity, and maize yield in the arid maize fields of Xinjiang, China, where [...] Read more.
Water scarcity in arid regions poses a severe threat to agricultural sustainability, necessitating optimized irrigation strategies. This study investigates the cumulative impacts of long-term irrigation deficits on soil quality, microbial diversity, and maize yield in the arid maize fields of Xinjiang, China, where consistent irrigation patterns have been maintained over multiple years. Seven sites were monitored from April 2023 to March 2024, with a single end-of-cycle sampling in March 2024. Using the Irrigation Water Deficit Index (IWDI), the sites were classified into low (LD, 16.37–22.30%), moderate (MD, 30.54–38.10%), and high drought (HD, 47.49–50.00%) categories. The findings reveal that long-term consistent irrigation deficits exacerbate soil salinization, compaction, and nutrient loss, with organic matter declining significantly under HD conditions. Bacterial richness increased by ~6% under HD, driven by stress-tolerant taxa, while fungal diversity decreased by 14–50%, impairing nutrient cycling functions critical for soil health. The Soil Quality Index (SQI) and maize yield declined with drought severity (LD > MD by 26.18% and 21.05%; LD > HD by 45.02% and 13.13%), highlighting the pivotal role of sustained irrigation patterns in maintaining productivity. These results underscore the need for tailored irrigation management in arid regions, such as precision drip irrigation, to mitigate soil degradation and sustain maize yields, providing a scientific foundation for optimizing water use efficiency in water-scarce agroecosystems under long-term irrigation regimes. Full article
(This article belongs to the Section Water Use and Irrigation)
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20 pages, 1731 KiB  
Review
Resilience of Maize to Environmental Stress: Insights into Drought and Heat Tolerance
by Huaijun Tang, Lei Zhang, Xiaoqing Xie, Yejian Wang, Tianyu Wang and Cheng Liu
Int. J. Mol. Sci. 2025, 26(11), 5274; https://doi.org/10.3390/ijms26115274 - 30 May 2025
Viewed by 732
Abstract
Maize (Zea mays L.) is a staple cereal crop worldwide, but its productivity is significantly affected by extreme weather conditions such as drought and heat stress. Plant growth, physiological processes, and yield potential are all affected by these conditions; as such, resilient [...] Read more.
Maize (Zea mays L.) is a staple cereal crop worldwide, but its productivity is significantly affected by extreme weather conditions such as drought and heat stress. Plant growth, physiological processes, and yield potential are all affected by these conditions; as such, resilient maize crops are required to tackle these abiotic challenges. With an emphasis on morphological, physiological, and biochemical reactions, this review paper investigates the processes that underlie resistance to certain environmental challenges. Features including deep root systems, osmotic adaptations, and antioxidant enzyme activity help maize withstand drought. Activation of drought- and heat-responsive genes, accumulation of osmoregulatory compounds, and changes in membrane fluidity are all components of abiotic stress tolerance. Likewise, improved transpiration efficiency, modified photosynthetic processes, and improved heat shock proteins are used to produce heat resistance. Enhancing resilience requires progress in breeding methods, genetic engineering, and agronomic techniques, such as the use of stress-tolerant cultivars, biotechnology interventions, and climate-smart agriculture tactics. A special focus was given to cutting edge technologies like CRISPER-Cas9-mediated recent advances in heat and drought resistance. This review sheds light on recent studies and potential avenues for enhancing resilience to harsh climatic conditions, guaranteeing food security in the face of climate change. Full article
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18 pages, 2375 KiB  
Article
Mitigating Drought Stress in Maize: Synergistic Effects of Zinc Sulfate and Pseudomonas spp. on Physiological and Biochemical Responses
by Fahimeh Khaledi, Hamidreza Balouchi, Mohsen Movahhedi Dehnavi, Amin Salehi and Beata Dedicova
Plants 2025, 14(10), 1483; https://doi.org/10.3390/plants14101483 - 15 May 2025
Viewed by 464
Abstract
This study aimed to evaluate the synergistic effects of zinc sulfate and Pseudomonas spp. in terms of mitigating drought stress in maize (Zea mays L.) by analyzing physiological, biochemical, and morphological responses under field conditions. A two-year (2018–2019) field experiment investigated two [...] Read more.
This study aimed to evaluate the synergistic effects of zinc sulfate and Pseudomonas spp. in terms of mitigating drought stress in maize (Zea mays L.) by analyzing physiological, biochemical, and morphological responses under field conditions. A two-year (2018–2019) field experiment investigated two irrigation levels (optimal and moderate stress) and twelve treatment combinations of zinc sulfate application methods (without fertilizer, soil, foliar, and seed priming) with zinc-solubilizing bacteria (no bacteria, Pseudomonas fluorescens, and Pseudomonas aeruginosa). Drought stress significantly reduced chlorophyll content, increased oxidative damage, and impaired membrane stability, leading to a 42.4% increase in electrolyte leakage and a 10.9% reduction in leaf area index. However, the combined application of zinc sulfate and P. fluorescens, and P. aeruginosa mitigated these effects, with seed priming showing the most significant improvements. Specifically, seed priming with zinc sulfate and P. fluorescens increased catalase activity by 76% under non-stress conditions and 24% under drought stress. Principal component analysis revealed that treatments combining zinc sulfate and P. fluorescens, and P. aeruginosa were strongly associated with improved chlorophyll content, carotenoid content, and grain yield while also enhancing osmotic adjustment and antioxidant enzyme activity. These findings highlight the potential of the use of zinc sulfate and P. fluorescens as well as P. aeruginosa as sustainable strategies for enhancing maize drought tolerance, mainly through seed priming and soil application methods. Full article
(This article belongs to the Special Issue Physiological Ecology and Regulation of High-Yield Maize Cultivation)
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28 pages, 4104 KiB  
Article
Transcriptome Analysis Reveals the Molecular Mechanisms for Mycorrhiza-Enhanced Drought Tolerance in Maize by Regulating the Ca2+ Signaling Pathway
by Qiaoming Zhang, Wenjing Yang, Miaomiao Wang, Junwei Chen, Zhaoran Zhang, Yanan Wei, Qingshan Chang and Minggui Gong
J. Fungi 2025, 11(5), 375; https://doi.org/10.3390/jof11050375 - 14 May 2025
Cited by 1 | Viewed by 561
Abstract
With the continuous change of climate, drought stress has emerged as the primary constraint on crop growth, posing a significant threat to the stability of global grain reserves. Arbuscular mycorrhizal fungi (AMF), as a kind of widely distributed root endophytes, enhance the drought [...] Read more.
With the continuous change of climate, drought stress has emerged as the primary constraint on crop growth, posing a significant threat to the stability of global grain reserves. Arbuscular mycorrhizal fungi (AMF), as a kind of widely distributed root endophytes, enhance the drought tolerance of maize (Zea mays L.) through regulating the physiological and molecular responses. However, comprehensive transcriptome analysis to reveal the molecular mechanism of drought tolerance in the symbiotic process between AMF and maize is still limited. In the potted plant experiment, maizes inoculated with and without arbuscular mycorrhizal fungus Funneliformis mosseae were grown under well-watered (WW) or drought-stressed (DS) conditions. By using RNA-Seq and transcriptome analysis on maize roots and leaves, this work aimed to investigate the differential expressed genes (DEGs) related to the Ca2+ signaling pathway induced by AMF symbiosis under drought stress. Our findings indicated that F. mosseae inoculation resulted in a decrease in the net fluxes of Ca2+, while simultaneously elevating Ca2+ contents in the maize roots and leaves under well-watered or drought-stressed conditions. Notably, 189 DEGs were regulated not only by AMF symbiosis and drought stress, but also exhibited preferential expression in either leaves or roots. The annotation and enrichment of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) showed that most of the DEGs were significantly enriched in Ca2+ signaling pathway genes, related to signal transduction, cellular process, and defense response. A high number of DEGs with this function (including calcineurin B-like protein (CBL), CBL-interacting protein kinase (CIPK), mitogen-activated protein kinase (MAPK), and calcium-dependent protein kinase (CDPK) receptor kinases) were upregulated-DEGs or downregulated-DEGs in F. mosseae-inoculated maizes under drought stress. Furthermore, some DEGs belong to transcription factor (TF) families, including bHLH ERF, and, MYB, were speculated to play key roles in improving the drought tolerance of maize. Based on the expression data and co-expression analysis between TF and Ca2+ signaling pathway genes, Whirly1 with CBL11, and BRI1-EMS-SUPPRESSOR 1 (BES1) with CBL10, CIPK24, CDPK1, CDPK14, CDPK19, and MAPK9 genes showed significant positive correlations, while B3 domain-containing transcription factors (B3 TFs) with MAPK1 and both CBL9 genes showed significant negative correlations in response to both F. mosseae inoculation and drought stress. The regulation of Ca2+ signaling pathways by AMF symbiosis was an important response mechanism of maize to improve their drought resistance. This study provides insightful perspectives on how AMF-induced modulation of gene expression within the Ca2+ signaling pathway can enhance the drought tolerance of mycorrhizal maize in the future. Full article
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22 pages, 6351 KiB  
Article
Genome-Wide Analysis of Zm4CL Genes Identifies Zm4CL8 Regulating Drought and Salt Tolerance in Maize
by Ze Zhang, Yanbin Wang and Rong Li
Agronomy 2025, 15(5), 1100; https://doi.org/10.3390/agronomy15051100 - 30 Apr 2025
Viewed by 431
Abstract
Despite substantial progress in elucidating the stress-responsive mechanisms of 4-coumarate-CoA ligases (4CL) in various plant species, the maize (Zea mays L.) 4CL gene family remains underexplored, leaving a significant gap in our comprehension of its potential roles in abiotic stress tolerance and [...] Read more.
Despite substantial progress in elucidating the stress-responsive mechanisms of 4-coumarate-CoA ligases (4CL) in various plant species, the maize (Zea mays L.) 4CL gene family remains underexplored, leaving a significant gap in our comprehension of its potential roles in abiotic stress tolerance and adaptive strategies. Through comprehensive genome-wide analysis, we identified and characterized 32 putative 4CL genes in maize, which were phylogenetically classified into seven distinct clades. Members within the same clade exhibited conserved gene structures and motif compositions. Expression profiling across various maize tissues and under multiple abiotic stress conditions revealed specific 4CL genes associated with stress tolerance. Notably, promoter analysis identified numerous stress-responsive cis-regulatory elements in Zm4CL genes. Among the identified genes, six exhibited significant induction under salt stress, while five showed upregulation during drought conditions. Particularly, Zm4CL8, a member of the 4CL clade, demonstrated dual responsiveness to both drought and salt stresses. Functional characterization through virus-induced gene silencing (VIGS) revealed that Zm4CL8-silenced plants displayed enhanced sensitivity to both drought and salt stresses, as evidenced by significantly reduced chlorophyll content and survival rate, which collectively suggests its positive regulatory role in stress adaptation mechanisms. These findings establish Zm4CL8 as a promising molecular target for enhancing drought and salt tolerance in maize, while significantly advancing our understanding of the functional characterization of 4CL genes in this crucial crop species. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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20 pages, 6526 KiB  
Article
The LBD Transcription Factor ZmLBD33 Confers Drought Tolerance in Transgenic Arabidopsis
by Jing Xiong, Xin Mi, Lijuan Du and Xianqiu Wang
Plants 2025, 14(9), 1305; https://doi.org/10.3390/plants14091305 - 25 Apr 2025
Viewed by 490
Abstract
Drought stress severely impacts maize productivity, necessitating the exploration of molecular mechanisms underlying drought responses. In maize, while Class I members of the LBD family have been extensively studied for their essential functions in developmental regulation and environmental stress responses, the potential involvement [...] Read more.
Drought stress severely impacts maize productivity, necessitating the exploration of molecular mechanisms underlying drought responses. In maize, while Class I members of the LBD family have been extensively studied for their essential functions in developmental regulation and environmental stress responses, the potential involvement of Class II LBD genes in abiotic stress tolerance mechanisms remains poorly characterized. This study characterizes ZmLBD33, a maize Class II LBD gene, to elucidate its role in drought responses. Promoter analysis identified ABA-responsive cis-elements (AREB); ZmLBD33 expression was strongly induced in roots under drought and ABA treatments, localized to the nucleus, and exhibited dimerization via yeast two-hybrid despite lacking intact leucine zipper motifs. ZmLBD33-overexpressed plants showed later germination, shorter roots, and decreased survival rates than wild-type plants under osmotic stress and soil drought. Compared to wild-type plants, ZmLBD33-overexpressed plants showed significantly faster water loss, a greater stomatal density, and reduced stomatal closure efficiency. Histochemical analysis using DAB and NBT showed attenuated reactive oxygen species accumulation in transgenic Arabidopsis overexpressing ZmLBD33. Quantitative enzymatic activity analyses further indicated that SOD and POD levels were significantly elevated in ZmLBD33-overexpressing plants compared to wild-type plants. These findings indicate that ZmLBD33 negatively regulates drought tolerance by modulating stomatal aperture and H2O2 signaling. This study highlights the divergent roles of Class II LBD genes in stress adaptation and positions ZmLBD33 as a potential target for engineering drought-resilient crops. Full article
(This article belongs to the Special Issue Plant Stress Physiology and Molecular Biology—2nd Edition)
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19 pages, 5178 KiB  
Article
Pan-Genome-Based Characterization of the SRS Transcription Factor Family in Foxtail Millet
by Ruimiao Li, Cuiyun Lei, Qiang Zhang, Xiaomeng Guo, Xiting Cui, Xingchun Wang, Xukai Li and Jianhua Gao
Plants 2025, 14(8), 1257; https://doi.org/10.3390/plants14081257 - 21 Apr 2025
Viewed by 630
Abstract
The Short Internodes-Related Sequence (SRS) family, a class of plant-specific transcription factors crucial for diverse biological processes, was systematically investigated in foxtail millet using pan-genome data from 110 core germplasm resources as well as two high-quality genomes (xm and Yu1). We identified [...] Read more.
The Short Internodes-Related Sequence (SRS) family, a class of plant-specific transcription factors crucial for diverse biological processes, was systematically investigated in foxtail millet using pan-genome data from 110 core germplasm resources as well as two high-quality genomes (xm and Yu1). We identified SRS members and analyzed their intra-species distribution patterns, including copy number variation (CNV) and interchromosomal translocations. A novel standardized nomenclature (Accession_SiSRSN[.n]_xDy or xTy) was proposed to unify gene family nomenclature, enabling the direct visualization of member number variation across germplasms and the identification of core/variable members while highlighting chromosomal translocations. Focusing on the two high-quality genomes, both harboring six core SRS members, we performed whole-genome collinearity analysis with Arabidopsis, rice, maize, soybean, and green foxtail. Ka/Ks analysis of collinear gene pairs revealed purifying selection acting on SiSRS genes. Promoter analysis identified abundant stress-responsive cis-elements. Among core members, the xm_SiSRS5 gene exhibited the highest expression during vegetative growth but showed significant downregulation under drought and salt stress, suggesting its role as a key negative regulator in abiotic stress responses. This study demonstrates the utility of pan-genomics in resolving gene family dynamics and establishes SiSRS5 as a critical target for stress tolerance engineering in foxtail millet. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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17 pages, 5140 KiB  
Article
Marker-Assisted Backcross Breeding of Drought-Tolerant Maize Lines Transformed by Vacuolar H+-Pyrophosphatase Gene (AnVP1) from Ammopiptanthus nanus
by Yang Cao, Haoqiang Yu, Xin Guo, Yanli Lu, Wanchen Li and Fengling Fu
Plants 2025, 14(6), 926; https://doi.org/10.3390/plants14060926 - 15 Mar 2025
Viewed by 687
Abstract
Maize is highly sensitive to water deficit but has high transpiration and biomass production, leading to a substantial water demand. Genetic engineering can overcome reproductive isolation and utilize drought-tolerant genes from distant species. Ammopiptanthus nanus is a relic of the Tertiary glaciation that [...] Read more.
Maize is highly sensitive to water deficit but has high transpiration and biomass production, leading to a substantial water demand. Genetic engineering can overcome reproductive isolation and utilize drought-tolerant genes from distant species. Ammopiptanthus nanus is a relic of the Tertiary glaciation that can adapt to harsh environmental conditions. In our previous study, five maize homozygous T8 lines overexpressing the AnVP1 gene from Ammopiptanthus nanus were generated and showed the enhancement of drought tolerance. However, the recipient inbred line Zh-1 was poor in yield and agronomic performance. In the present study, the AnVP1 gene was backcrossed from donor parent L10 (one of the five T8 lines) into recurrent parent Chang 7-2 (one of the elite parents of the commercial hybrid Zhengdan 958). In total, 103 InDel markers were developed and used for assisted background selection. After two generations of foreground selection through glufosinate spraying, the detection of CP4 EPSP MAb1 strips, and the PCR amplification of the AnVP1 gene, along with the similarity of agronomic traits to the recurrent parent, and background selection assisted by these InDel markers, the transgenic AnVP1 gene became homozygous in the BC2 lines. The average recovery rate of the genetic background of the recurrent parent reached 74.80% in the BC1 population and 91.93% in the BC2 population, respectively. The results of RT-PCR and RT-qPCR indicated the stable expression of the AnVP1 gene in the two ultimately selected BC2F3 lines, BC2-36-12 and BC2-5-15. The drought tolerance of these two BC2F3 lines were significantly improved compared to the recurrent parent Chang 7-2, as revealed by their wilting phenotype and survival rate of seedlings. This improvement was related to the enhancement of water-retention ability, as indicated by higher RWC and the reduction in damage, as shown by the decrease in REL, MDA, and H2O2 under drought stress. The result of field evaluation in two arid and semi-arid environments indicated that the drought tolerance of Chang 7-2 was significantly improved. This study suggests that the improved Chang 7-2 can be crossed with Zheng 58 to develop the transgenic commercial hybrid Zhengdan 958. Full article
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