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Keywords = dipolar media

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29 pages, 719 KiB  
Article
State Transitions and Hysteresis in a Transverse Magnetic Island Chain
by Gary M. Wysin
Magnetism 2025, 5(1), 9; https://doi.org/10.3390/magnetism5010009 - 12 Mar 2025
Viewed by 1246
Abstract
A chain of dipole-coupled elongated magnetic islands whose long axes are oriented perpendicular to the chain is studied for its magnetization properties. With a magnetic field applied perpendicular to the chain, the competition between dipolar energy, shape anisotropy, and field energy leads to [...] Read more.
A chain of dipole-coupled elongated magnetic islands whose long axes are oriented perpendicular to the chain is studied for its magnetization properties. With a magnetic field applied perpendicular to the chain, the competition between dipolar energy, shape anisotropy, and field energy leads to three types of uniform states with distinct magnetizations: (1) oblique to the chain, (2) perpendicular to the chain, and (3) zero due to having alternating dipoles. The response of these states to a slowly varying field is analyzed, focusing on their stability limits and related oscillation modes, and the dependencies on the dipolar and anisotropy constants. Based on identifiable transitions among the three states and their instability points, the theoretically predicted zero-temperature magnetization curves show significant dependence on the anisotropy. The model suggests a path for designing advanced materials with desired magnetic properties. Different geometries and magnetic media for the islands are considered. Full article
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13 pages, 2549 KiB  
Article
Unprecedented High Probe-Reported Polarity of Deep Eutectic Solvents Composed of Lanthanide Salts and Urea
by Anushis Patra, Vaishali Khokhar and Siddharth Pandey
Liquids 2024, 4(3), 505-517; https://doi.org/10.3390/liquids4030028 - 18 Jul 2024
Cited by 1 | Viewed by 2163
Abstract
Deep eutectic solvents (DESs) have emerged as viable alternatives to toxic organic solvents. The most intriguing aspect of these solvents is perhaps the widely varying physicochemical properties emerging from the changes in the constituents that form DESs along with their composition. Based on [...] Read more.
Deep eutectic solvents (DESs) have emerged as viable alternatives to toxic organic solvents. The most intriguing aspect of these solvents is perhaps the widely varying physicochemical properties emerging from the changes in the constituents that form DESs along with their composition. Based on the constituents, a DES can be hydrophilic/polar or hydrophobic/non-polar, rendering a vastly varying spectrum of polarity a possibility. DESs formed by mixing urea (U) with hydrated lanthanide salts, lanthanum nitrate hexahydrate (La : U), cerium nitrate hexahydrate (Ce : U), and gadolinium nitrate hexahydrate (Gd : U), respectively, exhibit very high polarity as manifested via the probe-reported empirical parameters of dipolarity/polarizability (π*). The highest π* of 1.70 exhibited by the DES (Gd : U) in a 1 : 2 molar ratio is unprecedented. The π* ranges from 1.50 to 1.70 for these DESs, which is almost the highest reported for any solvent system. The π* decreases with an increasing amount of urea in the DES; however, the anomalous trends in H-bond donating acidity (α) and H-bond accepting basicity (β) appear to be due to the hydrated water of the lanthanide salt. The emission band maxima of the fluorescence probe of the “effective” dielectric constant (εeff) of the solubilizing media, pyrene-1-carboxaldehyde (PyCHO), in salt-rich DESs reflect higher cybotactic region dipolarity than that offered by water. Probe Nile red aggregates readily in these DESs to form non-fluorescent H-aggregates, which is a characteristic of highly polar solvents. The behavior of probe pyranine also corroborates these outcomes as the (lanthanide salt : urea) DES system supports the formation of the deprotonated form of the probe in the excited state. The (lanthanide salt : urea) DES system offers solubilizing media of exceptionally high polarity, which is bound to expand their application potential. Full article
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48 pages, 9470 KiB  
Perspective
Reflections on a Copenhagen–Minneapolis Axis in Bioorganic Chemistry
by George Barany and Paul R. Hansen
Molecules 2024, 29(6), 1317; https://doi.org/10.3390/molecules29061317 - 15 Mar 2024
Cited by 1 | Viewed by 2897
Abstract
The international peptide community rejoiced when one of its most distinguished members, Morten Meldal of Denmark, shared the 2022 Nobel Prize in Chemistry. In fact, the regiospecific solid-phase “copper(I)-catalyzed 1,3-dipolar cycloaddition of terminal alkynes to azides” (CuACC) reaction—that formed the specific basis for [...] Read more.
The international peptide community rejoiced when one of its most distinguished members, Morten Meldal of Denmark, shared the 2022 Nobel Prize in Chemistry. In fact, the regiospecific solid-phase “copper(I)-catalyzed 1,3-dipolar cycloaddition of terminal alkynes to azides” (CuACC) reaction—that formed the specific basis for Meldal’s recognition—was reported first at the 17th American Peptide Symposium held in San Diego in June 2001. The present perspective outlines intertwining conceptual and experimental threads pursued concurrently in Copenhagen and Minneapolis, sometimes by the same individuals, that provided context for Meldal’s breakthrough discovery. Major topics covered include orthogonality in chemistry; the dithiasuccinoyl (Dts) protecting group for amino groups in α-amino acids, carbohydrates, and monomers for peptide nucleic acids (PNA); and poly(ethylene glycol) (PEG)-based solid supports such as PEG–PS, PEGA, and CLEAR [and variations inspired by them] for solid-phase peptide synthesis (SPPS), solid-phase organic synthesis (SPOS), and combinatorial chemistry that can support biological assays in aqueous media. Full article
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10 pages, 698 KiB  
Perspective
Polarity of Aqueous Solutions
by Pedro P. Madeira, Luisa A. Ferreira, Vladimir N. Uversky and Boris Y. Zaslavsky
Liquids 2024, 4(1), 107-116; https://doi.org/10.3390/liquids4010005 - 12 Jan 2024
Cited by 3 | Viewed by 2616
Abstract
This short review describes the expansion of the solvatochromic approach utilizing water-soluble solvatochromic dyes to the analysis of solvent features of aqueous media in solutions of various compounds. These solvent features (polarity/dipolarity, hydrogen bond donor ability (HBD acidity), and hydrogen bond acceptor ability [...] Read more.
This short review describes the expansion of the solvatochromic approach utilizing water-soluble solvatochromic dyes to the analysis of solvent features of aqueous media in solutions of various compounds. These solvent features (polarity/dipolarity, hydrogen bond donor ability (HBD acidity), and hydrogen bond acceptor ability (HBA basicity)) vary depending on the nature and concentration of a solute. Furthermore, the solvent features of water (the solvent dipolarity/polarizability and hydrogen bond donor ability) in solutions of various compounds describe multiple physicochemical properties of these solutions (such as the solubility of various compounds in aqueous solutions, salting-out and salting-in constants for polar organic compounds in the presence of different inorganic salts, as well as water activity, osmotic coefficients, surface tension, viscosity, and the relative permittivity of aqueous solutions of different individual compounds) and are likely related to changes in the arrangement of hydrogen bonds of water in these solutions. Full article
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17 pages, 1785 KiB  
Article
Phosphine Catalyzed Michael-Type Additions: The Synthesis of Glutamic Acid Derivatives from Arylidene-α-amino Esters
by Lesly V. Rodríguez-Flórez, María González-Marcos, Eduardo García-Mingüens, María de Gracia Retamosa, Misa Kawase, Elisabet Selva and José M. Sansano
Molecules 2024, 29(2), 342; https://doi.org/10.3390/molecules29020342 - 10 Jan 2024
Viewed by 2138
Abstract
The reaction of arylidene-α-amino esters with electrophilic alkenes to yield Michael-type addition compounds is optimized using several phosphines as organocatalysts. The transformation is very complicated due to the generation of several final compounds, including those derived from the 1,3-dipolar cycloadditions. For [...] Read more.
The reaction of arylidene-α-amino esters with electrophilic alkenes to yield Michael-type addition compounds is optimized using several phosphines as organocatalysts. The transformation is very complicated due to the generation of several final compounds, including those derived from the 1,3-dipolar cycloadditions. For this reason, the selection of the reaction conditions is a very complex task and the slow addition of the acrylic system is very important to complete the process. The study of the variation in the structural components of the starting imino ester is performed as well as the expansion of other electron-poor alkenes. The crude products have a purity higher than 90% in most cases without any purification. A plausible mechanism is detailed based on the bibliography and the experimental results. The synthesis of pyroglutamate entities, after the reduction of the imino group and cyclization, is performed in high yields. In addition, the hydrolysis of the imino group, under acidic media, represents a direct access to glutamate surrogates. Full article
(This article belongs to the Special Issue A Journey of Organic Chemistry in Spain)
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11 pages, 259 KiB  
Article
The Influence of Voids in the Vibrations of Bodies with Dipolar Structure
by Marin Marin, Sorin Vlase and Adina Chirila
Symmetry 2021, 13(10), 1804; https://doi.org/10.3390/sym13101804 - 28 Sep 2021
Cited by 2 | Viewed by 1284
Abstract
In our study we analyse the vibration of a right cylinder which consists of an elastic material with dipolar structure and has pores. One end of this cylinder is subjected to an excitation, harmonically in time. The other end of the cylinder and [...] Read more.
In our study we analyse the vibration of a right cylinder which consists of an elastic material with dipolar structure and has pores. One end of this cylinder is subjected to an excitation, harmonically in time. The other end of the cylinder and its lateral surface are free of loads. We prove that the presence of the voids does not affect the spatial decay of effects away from the excited end, if the harmonic excitation level is below a predetermined threshold. Full article
(This article belongs to the Section Mathematics)
11 pages, 3650 KiB  
Article
The Reactivity of Azidonitrobenzofuroxans towards 1,3-Dicarbonyl Compounds: Unexpected Formation of Amino Derivative via the Regitz Diazo Transfer and Tautomerism Study
by Elena Chugunova, Almir Gazizov, Daut Islamov, Alexander Burilov, Alena Tulesinova, Sergey Kharlamov, Victor Syakaev, Vasily Babaev, Nurgali Akylbekov, Nurbol Appazov, Konstantin Usachev and Rakhmetulla Zhapparbergenov
Int. J. Mol. Sci. 2021, 22(17), 9646; https://doi.org/10.3390/ijms22179646 - 6 Sep 2021
Cited by 3 | Viewed by 2851
Abstract
Herein, we report on the reaction of nitro-substituted azidobenzofuroxans with 1,3-dicarbonyl compounds in basic media. The known reactions of benzofuroxans and azidofuroxans with 1,3-dicarbonyl compounds in the presence of bases are the 1,3-dipolar cycloaddition and the Beirut reaction. In contrast with this, azidonitrobenzofuroxan [...] Read more.
Herein, we report on the reaction of nitro-substituted azidobenzofuroxans with 1,3-dicarbonyl compounds in basic media. The known reactions of benzofuroxans and azidofuroxans with 1,3-dicarbonyl compounds in the presence of bases are the 1,3-dipolar cycloaddition and the Beirut reaction. In contrast with this, azidonitrobenzofuroxan reacts with 1,3-carbonyl compounds through Regitz diazo transfer, which is the first example of this type of reaction for furoxan derivatives. This difference is seemingly due to the strong electron-withdrawing effect of the superelectrophilic azidonitrobenzofuroxan, which serves as the azido transfer agent rather than 1,3-dipole in this case. Full article
(This article belongs to the Special Issue Bioactive Oxadiazoles 2.0)
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9 pages, 2390 KiB  
Communication
Comparative Studies on Regioselectivity of α- and β-Linked Glucan Tosylation
by Andreas Koschella, Thomas Heinze, Antje Tied, Katja Geitel, Chih-Ying Chien and Tadahisa Iwata
Molecules 2020, 25(22), 5382; https://doi.org/10.3390/molecules25225382 - 17 Nov 2020
Cited by 2 | Viewed by 3126
Abstract
Alpha- and beta-linked 1,3-glucans have been subjected to conversion with p-toluenesulfonic acid (tosyl) chloride and triethylamine under homogeneous reaction conditions in N,N-dimethyl acetamide/LiCl. Samples with a degree of substitution of tosyl groups (DSTs) of up to 1.91 [...] Read more.
Alpha- and beta-linked 1,3-glucans have been subjected to conversion with p-toluenesulfonic acid (tosyl) chloride and triethylamine under homogeneous reaction conditions in N,N-dimethyl acetamide/LiCl. Samples with a degree of substitution of tosyl groups (DSTs) of up to 1.91 were prepared by applying 5 mol reagent per mole repeating unit. Hence, the reactivity of α-1,3-glucan is comparable with cellulose and starch, while the β-1,3-linked glucan curdlan is less reactive. The samples dissolve in aprotic dipolar media independent of the DSTs and possess a solubility in less polar solvents that depends on the DSTs. NMR studies on the tosyl glucans and of the peracylated derivatives showed a preferred tosylation of position 2 of the repeating unit. However, the selectivity is less pronounced compared with starch. It could be concluded that the α-configurated glycosidic bond directs tosyl groups towards position 2. Full article
(This article belongs to the Special Issue Polysaccharides: Structure-Function Relationships)
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22 pages, 1040 KiB  
Article
A Simple and Efficient Protocol for Proline-Catalysed Asymmetric Aldol Reaction
by Marco Giuseppe Emma, Alice Tamburrini, Ada Martinelli, Marco Lombardo, Arianna Quintavalla and Claudio Trombini
Catalysts 2020, 10(6), 649; https://doi.org/10.3390/catal10060649 - 10 Jun 2020
Cited by 19 | Viewed by 10834
Abstract
The proline-catalysed asymmetric aldol reaction is usually carried out in highly dipolar aprotic solvents (dimethylsulfoxide, dimethylformamide, acetonitrile) where proline presents an acceptable solubility. Protic solvents are generally characterized by poor stereocontrol (e.g., methanol) or poor reactivity (e.g., water). Here, we report that water/methanol [...] Read more.
The proline-catalysed asymmetric aldol reaction is usually carried out in highly dipolar aprotic solvents (dimethylsulfoxide, dimethylformamide, acetonitrile) where proline presents an acceptable solubility. Protic solvents are generally characterized by poor stereocontrol (e.g., methanol) or poor reactivity (e.g., water). Here, we report that water/methanol mixtures are exceptionally simple and effective reaction media for the intermolecular organocatalytic aldol reaction using the simple proline as the catalyst. Full article
(This article belongs to the Special Issue New Trends in Asymmetric Catalysis)
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18 pages, 5824 KiB  
Review
Recent Progress of Cu-Catalyzed Azide-Alkyne Cycloaddition Reactions (CuAAC) in Sustainable Solvents: Glycerol, Deep Eutectic Solvents, and Aqueous Media
by Noel Nebra and Joaquín García-Álvarez
Molecules 2020, 25(9), 2015; https://doi.org/10.3390/molecules25092015 - 26 Apr 2020
Cited by 64 | Viewed by 8496
Abstract
This mini-review presents a general overview of the progress achieved during the last decade on the amalgamation of CuAAC processes (copper-catalyzed azide-alkyne cycloaddition) with the employment of sustainable solvents as reaction media. In most of the presented examples, the use of water, glycerol [...] Read more.
This mini-review presents a general overview of the progress achieved during the last decade on the amalgamation of CuAAC processes (copper-catalyzed azide-alkyne cycloaddition) with the employment of sustainable solvents as reaction media. In most of the presented examples, the use of water, glycerol (Gly), or deep eutectic solvents (DESs) as non-conventional reaction media allowed not only to recycle the catalytic system (thus reducing the amount of the copper catalyst needed per mole of substrate), but also to achieve higher conversions and selectivities when compared with the reaction promoted in hazardous and volatile organic solvents (VOCs). Moreover, the use of the aforementioned green solvents also permits the improvement of the overall sustainability of the Cu-catalyzed 1,3-dipolar cycloaddition process, thus fulfilling several important principles of green chemistry. Full article
(This article belongs to the Special Issue Solvent-Dependent Organic Transformations)
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12 pages, 2950 KiB  
Communication
Articulated Structures of D-A Type Dipolar Dye with AIEgen: Synthesis, Photophysical Properties, and Applications
by Na Hee Kim, Byeong Wook Kim, Youngseo Kim, Junho K. Hur, Junyang Jung, Yohan Oh, Sungnam Park, B. Moon Kim and Dokyoung Kim
Materials 2020, 13(8), 1939; https://doi.org/10.3390/ma13081939 - 20 Apr 2020
Cited by 2 | Viewed by 3367
Abstract
Articulated structures of naphthalene-based donor (D)-acceptor (A) type dipolar dye and aggregation-induced emission luminogen (AIEgen) based on tetraphenylethylene (TPE) were synthesized, and their photophysical properties were analyzed for the first time. There are many fluorophore backbones, which have dipolar structure and AIEgen. However, [...] Read more.
Articulated structures of naphthalene-based donor (D)-acceptor (A) type dipolar dye and aggregation-induced emission luminogen (AIEgen) based on tetraphenylethylene (TPE) were synthesized, and their photophysical properties were analyzed for the first time. There are many fluorophore backbones, which have dipolar structure and AIEgen. However, there has been neither property analysis nor research that closely articulates DA and AIE through non-conjugation linker. We have therefore prepared two representative fluorophores; DA-AIE series (DA-AIE-M and DA-AIE-D), and characterized their UV/vis absorption and emission properties with quantum chemical calculations. In addition, we utilized the unique photophysical properties of DA-AIE-D for monitoring a trace of dimethyl sulfoxide (DMSO) in aqueous media, including real water samples. Full article
(This article belongs to the Special Issue Fluorescent Probes for Imaging and Detection)
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16 pages, 4410 KiB  
Article
Copresentation of BMP-6 and RGD Ligands Enhances Cell Adhesion and BMP-Mediated Signaling
by Francesca Posa, Anna Luise Grab, Volker Martin, Dirk Hose, Anja Seckinger, Giorgio Mori, Slobodan Vukicevic and Elisabetta Ada Cavalcanti-Adam
Cells 2019, 8(12), 1646; https://doi.org/10.3390/cells8121646 - 15 Dec 2019
Cited by 11 | Viewed by 4476
Abstract
We report on the covalent immobilization of bone morphogenetic protein 6 (BMP-6) and its co-presentation with integrin ligands on a nanopatterned platform to study cell adhesion and signaling responses which regulate the transdifferentiation of myoblasts into osteogenic cells. To immobilize BMP-6, the heterobifunctional [...] Read more.
We report on the covalent immobilization of bone morphogenetic protein 6 (BMP-6) and its co-presentation with integrin ligands on a nanopatterned platform to study cell adhesion and signaling responses which regulate the transdifferentiation of myoblasts into osteogenic cells. To immobilize BMP-6, the heterobifunctional linker MU-NHS is coupled to amine residues of the growth factor; this prevents its internalization while ensuring that its biological activity is maintained. Additionally, to allow cells to adhere to such platform and study signaling events arising from the contact to the surface, we used click-chemistry to immobilize cyclic-RGD carrying an azido group reacting with PEG-alkyne spacers via copper-catalyzed 1,3-dipolar cycloaddition. We show that the copresentation of BMP-6 and RGD favors focal adhesion formation and promotes Smad 1/5/8 phosphorylation. When presented in low amounts, BMP-6 added to culture media of cells adhering to the RGD ligands is less effective than BMP-6 immobilized on the surfaces in inducing Smad complex activation and in inhibiting myotube formation. Our results suggest that a local control of ligand density and cell signaling is crucial for modulating cell response. Full article
(This article belongs to the Special Issue Mechanotransduction in Control of Cell Fate and Function)
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25 pages, 4581 KiB  
Article
Conformational Investigations in Flexible Molecules Using Orientational NMR Constraints in Combination with 3J-Couplings and NOE Distances
by Christophe Farès, Julia B. Lingnau, Cornelia Wirtz and Ulrich Sternberg
Molecules 2019, 24(23), 4417; https://doi.org/10.3390/molecules24234417 - 3 Dec 2019
Cited by 12 | Viewed by 5453
Abstract
The downscaling of NMR tensorial interactions, such as dipolar couplings, from tens of kilohertz to a few hertz in low-order media is the result of dynamics spanning several orders of magnitudes, including vibrational modes (~ns-fs), whole-molecule reorientation (~ns) and higher barrier internal conformational [...] Read more.
The downscaling of NMR tensorial interactions, such as dipolar couplings, from tens of kilohertz to a few hertz in low-order media is the result of dynamics spanning several orders of magnitudes, including vibrational modes (~ns-fs), whole-molecule reorientation (~ns) and higher barrier internal conformational exchange (<ms). In this work, we propose to employ these dynamically averaged interactions to drive an “alignment-tensor-free” molecular dynamic simulation with orientation constraints (MDOC) in order to efficiently access the conformational space sampled by flexible small molecules such as natural products. Key to this approach is the application of tensorial pseudo-force restraints which simultaneously guide the overall reorientation and conformational fluctuations based on defined memory function over the running trajectory. With the molecular mechanics force-field, which includes bond polarization theory (BPT), and complemented with other available NMR parameters such as NOEs and scalar J-couplings, MDOC efficiently arrives at dynamic ensembles that reproduce the entire NMR dataset with exquisite accuracy and theoretically reveal the systems conformational space and equilibrium. The method as well as its potential towards configurational elucidation is presented on diastereomeric pairs of flexible molecules: a small 1,4-diketone 1 with a single rotatable bond as well as a 24-ring macrolide related to the natural product mandelalide A 2. Full article
(This article belongs to the Special Issue NMR Spectroscopy in Natural Product Structure Elucidation)
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24 pages, 654 KiB  
Article
Macroscopic Internal Variables and Mesoscopic Theory: A Comparison Considering Liquid Crystals
by Christina Papenfuss and Wolfgang Muschik
Entropy 2018, 20(1), 81; https://doi.org/10.3390/e20010081 - 22 Jan 2018
Cited by 5 | Viewed by 4645
Abstract
Internal and mesoscopic variables differ fundamentally from each other: both are state space variables, but mesoscopic variables are additionally equipped with a distribution function introducing a statistical item into consideration which is missing in connection with internal variables. Thus, the alignment tensor of [...] Read more.
Internal and mesoscopic variables differ fundamentally from each other: both are state space variables, but mesoscopic variables are additionally equipped with a distribution function introducing a statistical item into consideration which is missing in connection with internal variables. Thus, the alignment tensor of the liquid crystal theory can be introduced as an internal variable or as one generated by a mesoscopic background using the microscopic director as a mesoscopic variable. Because the mesoscopic variable is part of the state space, the corresponding balance equations change into mesoscopic balances, and additionally an evolution equation of the mesoscopic distribution function appears. The flexibility of the mesoscopic concept is not only demonstrated for liquid crystals, but is also discussed for dipolar media and flexible fibers. Full article
(This article belongs to the Special Issue Phenomenological Thermodynamics of Irreversible Processes)
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13 pages, 5547 KiB  
Article
Preparation and In Vitro Photodynamic Activity of Glucosylated Zinc(II) Phthalocyanines as Underlying Targeting Photosensitizers
by Jian-Yong Liu, Chen Wang, Chun-Hui Zhu, Zhi-Hong Zhang and Jin-Ping Xue
Molecules 2017, 22(5), 845; https://doi.org/10.3390/molecules22050845 - 19 May 2017
Cited by 15 | Viewed by 5814
Abstract
Two novel glucosylated zinc(ІІ) phthalocyanines 7a–7b, as well as the acetyl-protected counterparts 6a–6b, have been synthesized by the Cu(I)-catalyzed 1,3-dipolar cycloaddition between the propargylated phthalocyanine and azide-substituted glucoses. All of these phthalocyanines were characterized with various spectroscopic methods and studied for their photo-physical, [...] Read more.
Two novel glucosylated zinc(ІІ) phthalocyanines 7a–7b, as well as the acetyl-protected counterparts 6a–6b, have been synthesized by the Cu(I)-catalyzed 1,3-dipolar cycloaddition between the propargylated phthalocyanine and azide-substituted glucoses. All of these phthalocyanines were characterized with various spectroscopic methods and studied for their photo-physical, photo-chemical, and photo-biological properties. With glucose as the targeting unit, phthalocyanines 7a–7b exhibit a specific affinity to MCF-7 breast cancer cells over human embryonic lung fibroblast (HELF) cells, showing higher cellular uptake. Upon illumination, both photosensitizers show high cytotoxicity with IC50 as low as 0.032 µM toward MCF-7 cells, which are attributed to their high cellular uptake and low aggregation tendency in the biological media, promoting the generation of intracellular reactive oxygen species (ROS). Confocal laser fluorescence microscopic studies have also revealed that they have high and selective affinities to the lysosomes, but not the mitochondria, of MCF-7 cells. The results show that these two glucosylated zinc(II) phthalocyanines are potential anticancer agents for targeting photodynamic therapy. Full article
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