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22,184 Results Found

  • Article
  • Open Access
5 Citations
3,017 Views
16 Pages

Link Prediction and Graph Structure Estimation for Community Detection

  • Dongming Chen,
  • Mingshuo Nie,
  • Fei Xie,
  • Dongqi Wang and
  • Huilin Chen

22 April 2024

In real-world scenarios, obtaining the relationships between nodes is often challenging, resulting in incomplete network topology. This limitation significantly reduces the applicability of community detection methods, particularly neighborhood aggre...

  • Article
  • Open Access
7 Citations
2,082 Views
19 Pages

CSIM: A Fast Community Detection Algorithm Based on Structure Information Maximization

  • Yiwei Liu,
  • Wencong Liu,
  • Xiangyun Tang,
  • Hao Yin,
  • Peng Yin,
  • Xin Xu and
  • Yanbin Wang

Community detection has been a subject of extensive research due to its broad applications across social media, computer science, biology, and complex systems. Modularity stands out as a predominant metric guiding community detection, with numerous a...

  • Article
  • Open Access
3 Citations
3,219 Views
15 Pages

Decadal Changes in Benthic Community Structure and Function in a Coral Community in the Northeastern Tropical Pacific

  • Cassandra de Alba-Guzmán,
  • Rafael Andrés Cabral-Tena,
  • Fabián Alejandro Rodríguez-Zaragoza,
  • José de Jesús Adolfo Tortolero-Langarica,
  • Amílcar Leví Cupul-Magaña and
  • Alma Paola Rodríguez-Troncoso

27 June 2024

The high diversity and biomass of organisms associated with coral communities depend directly on the maintenance or changes in the benthic composition. Over a decade, we evaluated the spatiotemporal variation in the benthic structure and composition...

  • Article
  • Open Access
4 Citations
3,654 Views
15 Pages

Community Structure and Resilience of the City Logistics Networks in China

  • Jun-Chao Ma,
  • Zhi-Qiang Jiang,
  • Yin-Jie Ma and
  • Yue-Hua Dai

19 October 2023

Logistics security, as the lifeline of the economy connecting production, distribution, and consumption, holds a pivotal position in the modern economic system, where any potential threats like natural disasters or cyber attacks could have far-reachi...

  • Article
  • Open Access
2 Citations
1,652 Views
15 Pages

With rapid economic and social development, eutrophication in coastal areas is currently one of the most severe environmental problems worldwide. However, our understanding of the response of the phytoplankton community structure to the intensificati...

  • Article
  • Open Access
29 Citations
4,453 Views
16 Pages

Pine wilt disease (PWD) caused by the nematode Bursaphelenchus xylophilus is a devastating disease in conifer forests in Eurasia. However, information on the effect of PWD on the host microbial community is limited. In this study, the bacterial commu...

  • Review
  • Open Access
246 Citations
37,129 Views
30 Pages

Food Waste Composting and Microbial Community Structure Profiling

  • Kishneth Palaniveloo,
  • Muhammad Azri Amran,
  • Nur Azeyanti Norhashim,
  • Nuradilla Mohamad-Fauzi,
  • Fang Peng-Hui,
  • Low Hui-Wen,
  • Yap Kai-Lin,
  • Looi Jiale,
  • Melissa Goh Chian-Yee and
  • Shariza Abdul Razak
  • + 2 authors

22 June 2020

Over the last decade, food waste has been one of the major issues globally as it brings a negative impact on the environment and health. Rotting discharges methane, causing greenhouse effect and adverse health effects due to pathogenic microorganisms...

  • Article
  • Open Access
1 Citations
1,977 Views
15 Pages

Bacterial Community Structure in Rhizosphere of Barley at Maturity Stage

  • Siyu Zhang,
  • Yue An,
  • Yu Zhou,
  • Xiaofang Wang,
  • Yiqing Tang,
  • Daorong Zhang,
  • Genlou Sun,
  • Qifei Wang and
  • Xifeng Ren

16 November 2023

The crop rhizosphere is the main site of soil microbial activities. Understanding the structure and diversity of microbial communities in the crop rhizosphere will help us reveal interactions between rhizosphere microorganisms and plant growth. In th...

  • Article
  • Open Access
4 Citations
2,432 Views
14 Pages

Changes in Bacterial Community Structure in Reservoir Sediments before and after the Flood Season

  • Xianting He,
  • Min Chen,
  • Luxin Zhou,
  • Wenyan He,
  • Ning Liao and
  • Youcai Tuo

22 August 2023

Bacterial communities are important components of reservoir ecosystems, participating in and determining the material–energy transformations within reservoirs. The intense material–energy transport during the flood season can cause pertur...

  • Article
  • Open Access
13 Citations
4,893 Views
22 Pages

Graph-Based Community Detection for Decoy Selection in Template-Free Protein Structure Prediction

  • Kazi Lutful Kabir,
  • Liban Hassan,
  • Zahra Rajabi,
  • Nasrin Akhter and
  • Amarda Shehu

28 February 2019

Significant efforts in wet and dry laboratories are devoted to resolving molecular structures. In particular, computational methods can now compute thousands of tertiary structures that populate the structure space of a protein molecule of interest....

  • Article
  • Open Access
2 Citations
3,117 Views
15 Pages

Changes in Bird Community Structure on Mount Cameroon Driven by Elevational and Vertical Gradients

  • Solange Mekuate Kamga,
  • Simon A. Tamungang,
  • Taku Awa,
  • Kryštof Chmel,
  • Francis Luma Ewome,
  • Lucas Lyonga Molua,
  • Guillermo Uceda-Gómez,
  • Štěpán Janeček,
  • Jiří Mlíkovský and
  • Jan Riegert

1 June 2023

The distribution of birds in the tropical mountains is important not only for testing fundamental scientific hypotheses, but also for bird conservation. In order to obtain knowledge on bird community structure within the tropical highland ecosystem,...

  • Article
  • Open Access
2,353 Views
16 Pages

The Taiyangshan Wetland, a valuable wetland resource in the arid zone of central Ningxia, is critical for flood storage and drought resistance, climate regulation, and biodiversity protection. Nevertheless, the community structure and diversity of ba...

  • Article
  • Open Access
23 Citations
4,111 Views
15 Pages

24 August 2020

Field and laboratory investigations were conducted to characterize bacterial diversity and community structure in a badly contaminated mangrove wetland adjacent to the metropolitan area of a megacity in subtropical China. Next-generation sequencing t...

  • Article
  • Open Access
23 Citations
3,047 Views
19 Pages

The Yellow River is a valuable resource in the Ningxia Hui Autonomous Region and plays a vital role in local human activities and biodiversity. Bacteria are a crucial component of river ecosystems, but the driving factors and assembly mechanisms of b...

  • Article
  • Open Access
747 Views
17 Pages

Heterotrophic microorganisms derive energy by decomposing organic matter. Their composition and community structure are influenced by environmental factors and interactions. Soil heterotrophic respiration was assessed by establishing vegetation remov...

  • Article
  • Open Access
525 Views
13 Pages

2 November 2025

Understanding the mechanisms that assemble diverse forest communities is a central goal in ecology. Phylogenetic analyses based on DNA barcodes have advanced this field, but their use of sequences evolving at constant rates may not capture adaptation...

  • Article
  • Open Access
10 Citations
3,377 Views
12 Pages

Assessment of Species Composition and Community Structure of the Suburban Forest in Hangzhou, Eastern China

  • Liangjin Yao,
  • Zhigao Wang,
  • Xiaohao Zhan,
  • Weizhi Wu,
  • Bo Jiang,
  • Jiejie Jiao,
  • Weigao Yuan,
  • Jinru Zhu,
  • Yi Ding and
  • Chuping Wu
  • + 2 authors

5 April 2022

The forest community structure and dynamic structure provide basic data for in-depth study of the community maintenance mechanisms and succession processes of urban forest ecosystems. Moreover, the study on the dynamics of suburban forest communities...

  • Article
  • Open Access
46 Citations
5,531 Views
16 Pages

Effects of Spartina alterniflora Invasion on Soil Microbial Community Structure and Ecological Functions

  • Minmin Cao,
  • Lina Cui,
  • Huimin Sun,
  • Xiaomian Zhang,
  • Xiang Zheng and
  • Jiang Jiang

It has been reported that the invasion of Spartina alterniflora changed the soil microbial community in the mangrove ecosystem in China, especially the bacterial community, although the response of soil fungal communities and soil microbial ecologica...

  • Article
  • Open Access
27 Citations
6,032 Views
11 Pages

Effect of Soybean and Maize Rotation on Soil Microbial Community Structure

  • Peng Zhang,
  • Jiying Sun,
  • Lijun Li,
  • Xinxin Wang,
  • Xiaoting Li and
  • Jiahui Qu

22 January 2019

Examining the soil microbiome structure has great significance in terms of exploring the mechanism behind plant growth changes due to maize (Zea mays L.) and soybean (Glycine max Merr.) crop rotation. This study explored the effects of soil microbial...

  • Article
  • Open Access
8 Citations
3,459 Views
18 Pages

8 November 2022

The bacterial community in sediment is sensitive to artificial disturbance, and they respond differently to human disturbance, such as changing the nutrient cycling and energy flow in marine ecosystems. However, little is known about the dynamics and...

  • Article
  • Open Access
12 Citations
2,436 Views
15 Pages

Soil salinization is one of the most compelling environmental problems on a global scale. Fungi play a crucial role in promoting plant growth, enhancing salt tolerance, and inducing disease resistance. Moreover, microorganisms decompose organic matte...

  • Article
  • Open Access
8 Citations
2,963 Views
16 Pages

Afforestation-Induced Shifts in Soil Bacterial Diversity and Community Structure in the Saihanba Region

  • Kai-Chuan Huang,
  • Wen Zhao,
  • Jun-Ning Li,
  • Reyila Mumin,
  • Chang-Ge Song,
  • Hao Wang,
  • Yi-Fei Sun and
  • Bao-Kai Cui

Afforestation plays a pivotal role in ecosystem restoration, exemplified by the Saihanba Mechanized Forest Farm, the world’s largest planted forest; however, the assembly mechanisms and interactions of soil microbial communities in such forests...

  • Article
  • Open Access
9 Citations
3,546 Views
15 Pages

Response of Soil Nematode Community Structure and Function to Monocultures of Pumpkin and Melon

  • Dan Zhao,
  • Yao Wang,
  • Ling Wen,
  • Hongyun Qu,
  • Zuobiao Zhang,
  • Hui Zhang,
  • Yunhe Jia,
  • Juan Wang,
  • Yixin Feng and
  • Fengjuan Pan
  • + 2 authors

12 January 2022

It is well known that crop monoculture can induce negative effects on soil ecosystems and crop productivity. However, little is known about how vegetable monoculture affects the soil nematode community structure and its relationship with vegetable yi...

  • Article
  • Open Access
7 Citations
3,005 Views
18 Pages

7 February 2021

Alien species invasion affects local community biodiversity and stability considerably, and ecosystem services and functions will accordingly be dramatically changed. Many studies have reported a correlation between invasibility and the chemical natu...

  • Article
  • Open Access
13 Citations
3,284 Views
11 Pages

21 July 2022

Flood events can significantly affect the physical and biological processes of aquatic ecosystems in a short time, leading to rapid changes in phytoplankton community structure. The Huayanghe Lakes experienced extreme flooding in the summer of 2020,...

  • Article
  • Open Access
8 Citations
3,356 Views
15 Pages

Changes in Soil Microbial Community Structure Following Different Tree Species Functional Traits Afforestation

  • Yang Gao,
  • Xiuwei Wang,
  • Zijun Mao,
  • Liu Yang,
  • Zhiyan Jiang,
  • Xiangwei Chen and
  • Doug P. Aubrey

30 July 2021

The soil microbial community structure is critical to the cycling of carbon and nitrogen in forest soils. As afforestation practices increasingly promote different functional traits of tree species, it has become critical to understand how they influ...

  • Article
  • Open Access
4 Citations
2,997 Views
13 Pages

Species Diversity and Community Structure of Macrobenthos in the Cosmonaut Sea, East Antarctica

  • Jianfeng Mou,
  • Kun Liu,
  • Yaqin Huang,
  • Junhui Lin,
  • Xuebao He,
  • Shuyi Zhang,
  • Dong Li,
  • Yongcan Zu,
  • Zhihua Chen and
  • Wenhua Liu
  • + 2 authors

6 December 2023

The Cosmonaut Sea is an under-studied area and a “white spot” for macrobenthos research. Here, we report on the species diversity and community structure of macrobenthos collected using tringle trawls on the 38th Chinese National Antarcti...

  • Article
  • Open Access
12 Citations
2,908 Views
15 Pages

20 January 2022

This research aimed to reveal the response characteristics of soil microbial community structure to different degrees of tourism disturbance. To explore the soil microbial community structure’s response mechanism, we set up continuous plots wit...

  • Article
  • Open Access
10 Citations
3,139 Views
18 Pages

Exploring the Relationship Between Biochar Pore Structure and Microbial Community Composition in Promoting Tobacco Growth

  • Linyuan Yang,
  • Shichen Li,
  • Waqar Ahmed,
  • Tao Jiang,
  • Fupeng Mei,
  • Xiaodong Hu,
  • Wubo Liu,
  • Fatima M. Abbas,
  • Rujun Xue and
  • Zhengxiong Zhao
  • + 1 author

22 October 2024

The potential benefits of biochar, a carbon-rich substance derived from biomass, for enhancing agricultural yield and soil health have drawn increasing interest. Nevertheless, owing to the lack of specialized studies, the role of its poly-spatial str...

  • Feature Paper
  • Article
  • Open Access
20 Citations
3,898 Views
17 Pages

Microbial Community Structure of Arsenic-Bearing Groundwater Environment in the Riverbank Filtration Zone

  • Shuai Lu,
  • Yimeng Yang,
  • Hanling Yin,
  • Xiaosi Su,
  • Kaining Yu and
  • Chao Sun

12 May 2022

Arsenic (As) contamination of groundwater is a global public health problem. Microorganisms have a great effect on the migration and transformation of arsenic. Studying the effect of microbial community structure and function on arsenic release in th...

  • Feature Paper
  • Article
  • Open Access
8 Citations
2,328 Views
14 Pages

Effects of Maize/Peanut Intercropping and Nitrogen Fertilizer Application on Soil Fungal Community Structure

  • Yongyong Zhang,
  • Fengyan Zhao,
  • Chen Feng,
  • Wei Bai,
  • Zhe Zhang,
  • Qian Cai,
  • Zhanxiang Sun and
  • Liangshan Feng

15 May 2024

Maize/peanut intercropping may improve soil health through reducing nitrogen (N) fertilization. However, the effects of maize/peanut intercropping combined with reduced N fertilization on the soil fungal community structure have not been well reporte...

  • Article
  • Open Access
2 Citations
2,677 Views
17 Pages

Analysis of Spring Community Structure and Evaluation of Ecological Niche in Tangshan Marine Ranching, China

  • Jiaxing Li,
  • Zengqiang Yin,
  • Jun Yang,
  • Lei Chen,
  • Min Xu,
  • Yunling Zhang,
  • Zhongxin Wu and
  • Tao Tian

8 June 2022

To investigate the fishery community structure in spring at the early stage of construction of Tangshan Marine Ranching, in China. This study analyzed the relationship between species composition, diversity and community structure of fishery resource...

  • Article
  • Open Access
43 Citations
5,398 Views
17 Pages

Effects of Phytoremediation Treatment on Bacterial Community Structure and Diversity in Different Petroleum-Contaminated Soils

  • Yuanyuan Shen,
  • Yu Ji,
  • Chunrong Li,
  • Pingping Luo,
  • Wenke Wang,
  • Yuan Zhang and
  • Daniel Nover

Increased exploitation and use of petroleum resources is leading to increased risk of petroleum contamination of soil and groundwater. Although phytoremediation is a widely-used and cost-effective method for rehabilitating soils polluted by petroleum...

  • Article
  • Open Access
335 Views
14 Pages

2 February 2026

Understanding how environmental conditions, functional composition, and species richness jointly relate to phylogenetic community structure is important for sustainable forest management under environmental change. Using 2858 plots from the 7th Natio...

  • Article
  • Open Access
15 Citations
5,703 Views
16 Pages

Diversity and Community Structure of Zooplankton in Homestead Ponds of a Tropical Coastal Area

  • Sima Rani Karmakar,
  • Mohammad Belal Hossain,
  • Md. Milon Sarker,
  • As-Ad Ujjaman Nur,
  • Ahasan Habib,
  • Bilal Ahamad Paray,
  • Mohammad Khalid Al-Sadoon,
  • Aneela Gulnaz and
  • Takaomi Arai

13 September 2022

As an intermediary connection between primary producers and higher trophic levels, zooplankton are an important component of the aquatic food chain, contributing significantly to aquatic biological productivity. This study describes the zooplankton d...

  • Article
  • Open Access
10 Citations
3,698 Views
17 Pages

Effects of the Dominate Plant Families on Elevation Gradient Pattern of Community Structure in a Subtropical Forest

  • Jialiang Li,
  • Yinghua Luo,
  • Xiaoyang Song,
  • Dongdong Jiang,
  • Qiaoping He,
  • Aiqin Bai,
  • Ruilan Li and
  • Wenliu Zhang

13 September 2023

Dominant groups and rare groups often coexist in forests. Dominate plant families generally have more species diversity and occupy most of the biomass. However, their effects on community construction and species diversity maintenance remain to be st...

  • Article
  • Open Access
4 Citations
2,993 Views
17 Pages

14 February 2023

An understanding of soil moisture variation patterns under different plant community structures is crucial for the restoration of vegetation in southern China karst regions. Therefore, four plant community structure types: arbor + herb (AH), shrub +...

  • Article
  • Open Access
19 Citations
3,246 Views
14 Pages

23 May 2022

The continuous cropping obstacles in poplar cultivation cause declines in wood yield and serious soil-borne diseases, mainly because of structural alterations in the microbial community and the aggregation of pathogenic fungi. Bacillus subtilis T6-1,...

  • Article
  • Open Access
7 Citations
2,475 Views
18 Pages

Effect of Application Rates of N and P Fertilizers on Soil Nematode Community Structure in Mollisols

  • Xuerong Ni,
  • Xiangming Zhu,
  • Qingxiu Feng,
  • Dan Zhao,
  • Weiwei Huang and
  • Fengjuan Pan

29 February 2024

Long-term application of chemical fertilizer poses an environmental threat to belowground ecosystems. However, the impact of nitrogen (N) or phosphorus (P) fertilizers on soil biodiversity and the conditions of soil food web remains largely unknown....

  • Article
  • Open Access
12 Citations
3,307 Views
19 Pages

Analysis of the Microbial Community Structure and Volatile Metabolites of JIUYAO in Fangxian, China

  • Wendi Zhang,
  • Qing Ren,
  • Zhongchao Wang,
  • Huijie Liu,
  • Mingquan Huang,
  • Jihong Wu and
  • Baoguo Sun

JIUYAO is an important saccharification starter in the production of huangjiu and is also an important source of flavor. In this study, the microbial community structure of JIUYAO from Fangxian was studied by high-throughput sequencing (HTS) technolo...

  • Article
  • Open Access
51 Citations
8,688 Views
22 Pages

Community Structure, Biodiversity, and Ecosystem Services in Treeline Whitebark Pine Communities: Potential Impacts from a Non-Native Pathogen

  • Diana F. Tomback,
  • Lynn M. Resler,
  • Robert E. Keane,
  • Elizabeth R. Pansing,
  • Andrew J. Andrade and
  • Aaron C. Wagner

19 January 2016

Whitebark pine (Pinus albicaulis) has the largest and most northerly distribution of any white pine (Subgenus Strobus) in North America, encompassing 18° latitude and 21° longitude in western mountains. Within this broad range, however, whitebark pin...

  • Article
  • Open Access
12 Citations
4,358 Views
19 Pages

Phytoplankton Community Structure and Its Relationship with Environmental Factors in Nanhai Lake

  • Donghui Gong,
  • Ziqing Guo,
  • Wenxue Wei,
  • Jie Bi,
  • Zhizhong Wang and
  • Xiang Ji

29 October 2022

In order to determine the characteristics of phytoplankton community structure in Nanhai Lake in Baotou City and its relationship with environmental factors, water and phytoplankton samples were collected and composition and biomass were investigated...

  • Article
  • Open Access
12 Citations
3,742 Views
25 Pages

Seasonal Variability of the Airborne Eukaryotic Community Structure at a Coastal Site of the Central Mediterranean

  • Mattia Fragola,
  • Maria Rita Perrone,
  • Pietro Alifano,
  • Adelfia Talà and
  • Salvatore Romano

24 July 2021

The atmosphere represents an underexplored temporary habitat for airborne microbial communities such as eukaryotes, whose taxonomic structure changes across different locations and/or regions as a function of both survival conditions and sources. A p...

  • Article
  • Open Access
11 Citations
3,592 Views
12 Pages

28 June 2019

The anaerobic ammonium oxidation (anammox) reaction removes nitrogen from wastewater, the performance of which is influenced by Ca2+; however, the effect of Ca2+ on microbial community structure is unclear. Therefore, the effects of Ca2+ concentratio...

  • Article
  • Open Access
2,705 Views
7 Pages

1 April 2022

Identification of the community structure of phytoplankton is an important link in studying the structure and function of aquatic ecosystems. However, research on the community structure of phytoplankton in the Golmud area is very scarce at present....

  • Article
  • Open Access
21 Citations
3,845 Views
30 Pages

Effects of Elevation and Distance from Highway on the Abundance and Community Structure of Bacteria in Soil along Qinghai-Tibet Highway

  • Zhuocheng Liu,
  • Yangang Yang,
  • Shuangxuan Ji,
  • Di Dong,
  • Yinruizhi Li,
  • Mengdi Wang,
  • Liebao Han and
  • Xueping Chen

In recent years, highway construction in the Qinghai-Tibet Plateau (QTP) has developed rapidly. When the highway passes through grassland, the soil, vegetation, and ecological environment along the line are disturbed. However, the impact on soil bact...

  • Article
  • Open Access
2 Citations
1,127 Views
18 Pages

Spatial–Temporal Pattern and Stability Analysis of Zooplankton Community Structure in the Lower Yellow River in China

  • Yaowei Wang,
  • Shiyuan Zhang,
  • Minfang Sun,
  • Jiamin Han,
  • Ziyue Wang,
  • Xinlei Chen,
  • Zengfei Chen and
  • Haiming Qin

25 February 2025

In March (spring), June (summer), October (autumn), and December (winter) 2022, zooplankton were quantitatively investigated in the lower reaches of the Yellow River in China. A total of 29 sampling points that were separated by about 20 km were set...

  • Article
  • Open Access
7 Citations
3,716 Views
20 Pages

22 May 2021

This paper studies the community structure of the bank correlation network in the financial system and analyzes the systemic risk of the community sub-networks. Based on the balance sheet data of U.S. commercial banks from 2008, we establish a bank c...

  • Article
  • Open Access
7 Citations
3,996 Views
13 Pages

The Ulleung Basin of the East Sea is a biological hotspot, but studies on the macrobenthos therein are lacking. To evaluate the macrobenthos species diversity and community structure in the Ulleung Basin, we conducted a survey from 2017 to 2021. A to...

  • Article
  • Open Access
6 Citations
2,639 Views
16 Pages

24 May 2023

Microbial communities play crucial roles in the biogeochemical cycling of many important soil elements. Pesticides are known to affect non-targeted soil microorganisms. Glyphosate (GP) and diquat (DQ), two commonly used non-selective herbicides, ofte...

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