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Keywords = commercial biocontrol agents

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21 pages, 2903 KiB  
Article
Compost Tea Combined with Fungicides Modulates Grapevine Bacteriome and Metabolome to Suppress Downy Mildew
by Giuliano Bonanomi, Giuseppina Iacomino, Ayoub Idbella, Giandomenico Amoroso, Alessia Staropoli, Andrea De Sio, Franco Saccocci, Ahmed M. Abd-ElGawad, Mauro Moreno and Mohamed Idbella
J. Fungi 2025, 11(7), 527; https://doi.org/10.3390/jof11070527 - 16 Jul 2025
Viewed by 308
Abstract
Downy mildew, caused by Plasmopara viticola, is a major threat to grapevine (Vitis vinifera) cultivation in humid climates. Restrictions on synthetic pesticides and inconsistent efficacy of current biocontrol agents, especially under rainy conditions, complicate disease management. This study evaluated the [...] Read more.
Downy mildew, caused by Plasmopara viticola, is a major threat to grapevine (Vitis vinifera) cultivation in humid climates. Restrictions on synthetic pesticides and inconsistent efficacy of current biocontrol agents, especially under rainy conditions, complicate disease management. This study evaluated the potential of compost tea to suppress downy mildew in a two-year field experiment (2023 and 2024), combined with reduced synthetic fungicide applications. The study design compared two phytosanitary management strategies on a commercial vineyard: a conventional fungicide against a compost tea strategy supplemented with two cymoxanil applications. The experiment set up had three replicated blocks, each consisting of 100 plants for a total of 600 plants. Mechanistic insights were provided through controlled laboratory experiments involving pre- and post-infection leaf assays, vineyard bacteriome profiling, via 16S rRNA gene sequencing for bacterial communities, across vineyard compartments, i.e., bulk soil, rhizosphere, and phyllosphere, and grapevine metabolomic analysis by GC-MS analysis. Field trials demonstrated that compost tea combined with two fungicide applications effectively reduced disease severity, notably outperforming the fungicide alone in the particularly rainy year of 2023. Bacteriome analysis revealed that compost tea treatment enriched beneficial bacterial genera, including Pseudomonas, Sphingomonas, Enterobacter, Massilia, and Bacillus, known for their growth-promoting and biocontrol activity in the rhizosphere and phyllosphere. Laboratory assays on detached leaves further showed that compost tea alone could suppress both infection and sporulation of P. viticola. Metabolomic analysis highlighted the accumulation of compounds such as tartaric and shikimic acids in compost tea treated leaves, suggesting a potential role in induced resistance. The findings indicate that applying compost tea with reduced fungicide treatments represents a promising and sustainable strategy for managing grapevine downy mildew, even in challenging climates. Full article
(This article belongs to the Special Issue Biological Control of Fungal Plant Pathogens)
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13 pages, 1283 KiB  
Article
Susceptibility of Spodoptera frugiperda to Commercial Entomopathogenic Fungi Formulations in South Africa
by Simoné Louw, Vongai M. Paradza, Johnnie van den Berg and Hannalene du Plessis
Insects 2025, 16(7), 656; https://doi.org/10.3390/insects16070656 - 24 Jun 2025
Viewed by 657
Abstract
Chemical control using synthetic insecticides is the most widely used method for controlling the fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae) in Sub-Saharan Africa (SSA). However, the application of insecticides is not a long-term or sustainable solution. Biological control is an [...] Read more.
Chemical control using synthetic insecticides is the most widely used method for controlling the fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae) in Sub-Saharan Africa (SSA). However, the application of insecticides is not a long-term or sustainable solution. Biological control is an important pillar of integrated pest management, and entomopathogenic fungi (EPFs) are becoming increasingly important as biocontrol agents. However, no EPF biopesticides have been registered in South Africa for the control of S. frugiperda. Few studies have been conducted on the efficacy of commercial formulations of biopesticides against all S. frugiperda life stages. The objective of this study was, therefore, to assess the potential of two Beauveria bassiana (Balsamo-Crivelli) Vuillemin (Hypocreales: Clavicipitaceae) and two Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) based commercial biopesticides registered in South Africa against other pests, for their efficacy against S. frugiperda. The effects of these EPF formulations were evaluated on larval and prepupal mortality, moth emergence, fecundity, and longevity of the emerged moths. The results indicated that S. frugiperda second- and sixth-instar larvae were not susceptible to the biopesticides. Moth emergence, fecundity, and longevity were not significantly affected. However, prepupae were susceptible to both Metarhizium formulations, with Metarhizium anisopliae ICIPE 78 resulting in the highest mortality (56.7%). This biopesticide holds potential for the management of S. frugiperda when applied to the soil for the control of pupating larvae. Full article
(This article belongs to the Section Insect Pest and Vector Management)
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11 pages, 642 KiB  
Review
Economic Viability of Organic Fertilizers to Improve Growth, Yield, and Quality of Pineapples in Africa: A Review
by Zandile Nkolisa, Babalwa Mpambani, Nangamso Mtamzeli-Cekiso and Khayelihle Ncama
Horticulturae 2025, 11(6), 636; https://doi.org/10.3390/horticulturae11060636 - 6 Jun 2025
Viewed by 571
Abstract
Pineapple (Ananas comosus) is an important crop worldwide, due to its nutritional properties. It is well known as a rich source of vitamins (A, C, and D) and various minerals that are vital in human diets. The aim of this review [...] Read more.
Pineapple (Ananas comosus) is an important crop worldwide, due to its nutritional properties. It is well known as a rich source of vitamins (A, C, and D) and various minerals that are vital in human diets. The aim of this review was to explore the economic viability of organic fertilizers that improve growth, yield, and quality during pineapple production in Africa. This study was conducted through a comprehensive analysis of the literature from peer-reviewed journals. It was reviewed that organic fertilization is a general agricultural approach that prioritizes environmental sustainability, biodiversity, and soil health through the avoidance of chemicals, including inorganic fertilizers. It was also found that organic fertilizers can effectively improve growth performance, yield, and the quality of the pineapple fruit to levels comparable to those of the fruit grown using inorganic fertilizers. Subsistence and smallholder farmers have adopted organic fertilization more than commercial farmers. Various challenges, including high certification costs, limited market access, high operating costs, inadequate farmer training, and limited knowledge on producing fruit using organic fertilizers, have been reviewed. The potential for higher market prices for organically produced fruit was noted, together with the challenges. Despite higher market prices and environmental benefits from organic fertilization, the economic viability of organic fertilizers for pineapple production is constrained by other factors, such as pest management difficulties, as the policies of conservation agriculture limit the use of chemical pesticides or the introduction of alien species as biocontrol agents. Full article
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24 pages, 767 KiB  
Review
The Potential of Beneficial Microbes for Sustainable Alternative Approaches to Control Phytopathogenic Diseases
by Ramadan Bakr, Ali Abdelmoteleb, Vianey Mendez-Trujillo, Daniel Gonzalez-Mendoza and Omar Hewedy
Microbiol. Res. 2025, 16(5), 105; https://doi.org/10.3390/microbiolres16050105 - 20 May 2025
Cited by 1 | Viewed by 867
Abstract
Sustainable agricultural practices are essential for eradicating global hunger, especially in light of the growing world population. Utilizing natural antagonists, such as fungi and bacteria, to combat plant diseases, rather than relying solely on synthetic chemical pesticides, which pose significant risks to the [...] Read more.
Sustainable agricultural practices are essential for eradicating global hunger, especially in light of the growing world population. Utilizing natural antagonists, such as fungi and bacteria, to combat plant diseases, rather than relying solely on synthetic chemical pesticides, which pose significant risks to the environment and human health, is known as biocontrol. Microbial biological control agents (MBCAs) have proven effective against phytopathogens and are increasingly embraced in agricultural practices. MBCAs possess several beneficial traits, including antagonistic potential, rhizosphere competence, and the ability to produce lytic enzymes, antibiotics, and toxins. These biocontrol mechanisms directly target soil-borne pathogens or indirectly stimulate a plant-mediated resistance response. The effectiveness of MBCAs in managing plant diseases depends on various mechanisms, such as hyperparasitism, antibiosis, competition for nutrients or space, disruption of quorum-sensing signals, production of siderophores, generation of cell wall-degrading enzymes, and the induction and priming of plant resistance. Formulating effective biopesticides requires optimal conditions, including selecting effective strains, considering biosafety, appropriate storage methods, and ensuring a prolonged shelf life. Therefore, formulation is crucial in developing pesticide products, particularly concerning efficacy and production costs. However, several challenges must be addressed to ensure the successful application of biological control, including the shelf life of biopesticides, slower efficacy in pest management, inadequate awareness and understanding of biocontrol methods, regulatory registration for commercialization, and suitable agricultural applications. This review clarifies the principles of plant disease biocontrol, highlighting the mechanisms of action and functionality of MBCAs in biocontrol activities, the formulation of biopesticides derived from microorganisms, and the challenges and barriers associated with the development, registration, commercialization, and application of biopesticides. Full article
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21 pages, 3339 KiB  
Article
Isolation and Characterization of Pseudomonas sp. HX1, Streptomyces luteogriseus HR40, and Streptomyces flavofungini HR77 as Promising Biocontrol Agents Against Verticillium Wilt in Hops Affected by Verticillium nonalfalfae
by Seyedehtannaz Ghoreshizadeh, Carla Calvo-Peña, Marina Ruiz-Muñoz, Maja Dobrajc, Sebastjan Radišek, Juan José R. Coque and Rebeca Cobos
Horticulturae 2025, 11(5), 459; https://doi.org/10.3390/horticulturae11050459 - 25 Apr 2025
Viewed by 624
Abstract
Verticillium spp. are soil-borne fungal pathogens capable of infecting over 400 plant species via their root systems, with each species demonstrating a distinct host range. The primary host of Verticillium nonalfalfae is the hop plant (Humulus lupulus), which becomes affected by [...] Read more.
Verticillium spp. are soil-borne fungal pathogens capable of infecting over 400 plant species via their root systems, with each species demonstrating a distinct host range. The primary host of Verticillium nonalfalfae is the hop plant (Humulus lupulus), which becomes affected by Verticillium wilt and, in severe cases, dieback. A dual screening approach was employed to isolate Streptomycetes as potential biocontrol agents from the hop root systems alongside other bacterial species from hop xylem. Three Pseudomonas strains from the xylem and three Streptomyces strains from the roots were selected based on their in vitro antifungal activity against Verticillium dahliae and/or V. nonalfalfae. Their potential for controlling Verticillium wilt was further assessed through in planta assays conducted under greenhouse conditions. The results demonstrated that Pseudomonas sp. HX1, Streptomyces luteogriseus HR40, and Streptomyces flavofungini HR77 significantly reduced the disease severity index by 32.56% compared to artificially infected control plants. In contrast, the commercial biocontrol product Serenade® ASO, containing Bacillus amyloliquefaciens QST 713, achieved a reduction of 13.96%. These findings underscore the potential of the selected bacterial strains as promising candidates for the biological control of Verticillium wilt in hops affected by V. nonalfalfae. Full article
(This article belongs to the Special Issue Advances in Sustainable Cultivation of Horticultural Crops)
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21 pages, 3346 KiB  
Review
The Genus Clonostachys (Bionectria) as a Potential Tool Against Agricultural Pest and Other Biotechnological Applications: A Review
by Manuela Reyes-Estebanez and Pedro Mendoza-de Gives
Microbiol. Res. 2025, 16(4), 86; https://doi.org/10.3390/microbiolres16040086 - 19 Apr 2025
Viewed by 848
Abstract
The Clonostachys genus is a saprophytic soil microfungus (Ascomycota). It exhibits significant ecological adaptability and plays a crucial role in maintaining the balance of soil microorganisms. Species within this genus are natural antagonists of insects and nematodes, and they also combat phytopathogenic fungi [...] Read more.
The Clonostachys genus is a saprophytic soil microfungus (Ascomycota). It exhibits significant ecological adaptability and plays a crucial role in maintaining the balance of soil microorganisms. Species within this genus are natural antagonists of insects and nematodes, and they also combat phytopathogenic fungi through mycoparasitism. This process involves producing lytic enzymes and competing for space and nutrients. Clonostachys species are effective biocontrol agents in agriculture and have been utilized to manage pests affecting many high-value commercial crops, acting as a natural biopesticide. They inhabit plant tissues, boosting plant defenses and activating genes for water and nutrient uptake, enhancing plant performance. Additionally, they produce enzymes and bioactive metabolites with antimicrobial, antifungal, nematocidal, anticancer, and antioxidant properties. Clonostachys species can degrade plastic waste and remove hydrocarbons from crude oil-contaminated sites when functioning as endophytes, positioning Clonostachys as a promising candidate for reducing environmental pollution. There are still challenges and limitations, such as the continuous surveillance of the safety of Clonostachys species on plants, the establishment of commercial applications, formulation viability, and variability due to field conditions. These issues will have to be addressed. This review provides an overview of Clonostachys ecology, morphology, classification, and biotechnological applications, emphasizing its significance in various fields. Full article
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18 pages, 20467 KiB  
Article
Isolation and Biological Control of Colletotrichum sp. Causing Anthracnosis in Theobroma cacao L. in Chiapas, Mexico
by Nadia Denisse Rodríguez-Velázquez, Irene Gómez-de la Cruz, Guillermo López-Guillen, Belén Chávez-Ramírez and Paulina Estrada-de los Santos
J. Fungi 2025, 11(4), 312; https://doi.org/10.3390/jof11040312 - 15 Apr 2025
Viewed by 1216
Abstract
Anthracnose is a phytosanitary issue caused by various species of Colletotrichum. This study aims to revise the presence of Colletotrichum in the south of Mexico (the Soconusco area in Chiapas) and assess the inhibitory capacity of Paenibacillus sp. NMA1017 against Colletotrichum in [...] Read more.
Anthracnose is a phytosanitary issue caused by various species of Colletotrichum. This study aims to revise the presence of Colletotrichum in the south of Mexico (the Soconusco area in Chiapas) and assess the inhibitory capacity of Paenibacillus sp. NMA1017 against Colletotrichum in in vitro and field experiments. The study involved sampling pods with anthracnose from 17 sites in the Soconusco area, Chiapas, Mexico. The incidence of the disease ranged from 0.6 to 11.63%. A total of 142 isolates exhibiting the morphological characteristics of the Colletotrichum genus were obtained. Fifty selected isolates were identified using the ITS region and were classified as Colletotrichum gloeosporioides with 99% similarity. The concatenation of morphological and physiological characteristics resulted in nine main clusters. The in vitro test showed that Paenibacillus sp. NMA1017 inhibited the fungal growth of selected strains by 30–50%. The field experiments included three commercial biocontrol agents, Paenibacillus sp. NMA1017, and a water control. The incidence of anthracnose (control with water) ranged from 32 to 65%, while the commercial biocontrol agents and Paenibacillus showed an incidence range of 12 to 20%. These findings support the use of Paenibacillus sp. NMA1017 as a biocontrol agent for cacao anthracnose. Full article
(This article belongs to the Special Issue Biological Control of Fungal Plant Pathogens)
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22 pages, 3351 KiB  
Article
Chitosan as a Postharvest Alternative for the Control of Phytophthora capsici in Bell Pepper Fruits
by Juan Antonio Torres-Rodriguez, Juan José Reyes Pérez, Luis Tarquino Llerena Ramos, Leonardo Gonzalo-Matute, Edgar Omar Rueda-Puente and Luis Guillermo Hernandez-Montiel
Sci 2025, 7(2), 37; https://doi.org/10.3390/sci7020037 - 25 Mar 2025
Viewed by 911
Abstract
Phytophthora capsici is a phytopathogen that affects postharvest bell peppers, as it causes rotting and decreases their commercial value. This study evaluates the efficacy of chitosan as a biocontrol agent against P. capsici on bell peppers using in vitro and in vivo assays. [...] Read more.
Phytophthora capsici is a phytopathogen that affects postharvest bell peppers, as it causes rotting and decreases their commercial value. This study evaluates the efficacy of chitosan as a biocontrol agent against P. capsici on bell peppers using in vitro and in vivo assays. The antifungal activity of chitosan was evaluated at four concentrations (0.5, 1.0, 1.5, and 2.0 g L−1). Its effect on mycelial growth inhibition, sporangial germination, disease incidence and severity, and fruit weight loss was determined. The results show that concentrations of 1.0 g L−1 or higher completely inhibited P. capsici growth and sporangial germination in vitro and reduced disease incidence and severity to 0% in treated fruit. Furthermore, chitosan treatments preserved the fresh and dry weight of the fruit, which prevented postharvest deterioration. This study demonstrates that chitosan is an effective and environmentally friendly alternative for the management of postharvest diseases in bell peppers. This could reduce consumer dependence on synthetic fungicides and preserve fruit quality. Full article
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18 pages, 3309 KiB  
Article
Optimization of the Fermentation and Preparation of the Wettable Powder Formulation of Bacillus velezensis F0b
by Jiaqi Wen, Nana Pi, Fengting He, Yuhao Zeng, Qunfang Weng and Jianjun Luo
Microorganisms 2025, 13(3), 560; https://doi.org/10.3390/microorganisms13030560 - 1 Mar 2025
Viewed by 1151
Abstract
Bacillus velezensis is an effective biocontrol bacterium, with its microbial pesticides showing promise in biological control. In this study, we optimized the medium and conditions for fermenting strain F0b, developed a wettable powder formulation, and assessed its efficacy against Botrytis cinerea. We [...] Read more.
Bacillus velezensis is an effective biocontrol bacterium, with its microbial pesticides showing promise in biological control. In this study, we optimized the medium and conditions for fermenting strain F0b, developed a wettable powder formulation, and assessed its efficacy against Botrytis cinerea. We screened carriers, wetting agents, dispersants, and UV protectants compatible with F0b, determining the optimal ratio and dosage. The best medium for F0b fermentation included rice flour (3.472%), ammonium chloride (4.898%), and disodium phosphate (1.871%). The ideal fermentation conditions were a 20% inoculum volume, 40 °C temperature, 80% sterile water, and a 72 h fermentation time, yielding a viable count of 1.33 × 1010 CFU/mL. The final formulation contained 54.7% Bacillus velezensis dried powder, 27.3% kaolinite carrier, 16% wetting agent (3:7 ratio of sodium dodecyl sulfate to sodium lignin sulfonate), and 2% ascorbic acid as a UV protectant. All quality indicators met national standards, with a viable bacteria concentration of 7 billion CFU/g. Field trials showed that the F0b wettable powder effectively controlled Botrytis cinerea, with a disease index significantly lower than the control group. Control efficacy ranged from 50.58% to 73.14% over 7 to 14 days, demonstrating the commercial potential of this formulation. Full article
(This article belongs to the Section Microbial Biotechnology)
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15 pages, 1774 KiB  
Article
Management of Root Rot (Rhizoctonia solani Kühn) of Common Bean Using Host Resistance and Consortia of Chemicals and Biocontrol Agents
by Pratikshya Parajuli, Ritesh Kumar Yadav, Hira Kaji Manandhar and Megha N. Parajulee
Biology 2025, 14(3), 235; https://doi.org/10.3390/biology14030235 - 25 Feb 2025
Cited by 1 | Viewed by 1892
Abstract
Rhizoctonia root rot and web blight caused by Rhizoctonia solani Kühn is one of the destructive diseases of the common bean (Phaseolus vulgaris L.). A two-year study was conducted (2019–2021) to evaluate the common bean landraces and genotype, biocontrol agents, and chemical [...] Read more.
Rhizoctonia root rot and web blight caused by Rhizoctonia solani Kühn is one of the destructive diseases of the common bean (Phaseolus vulgaris L.). A two-year study was conducted (2019–2021) to evaluate the common bean landraces and genotype, biocontrol agents, and chemical fungicides against the pathogen. Nine landraces from high-altitude agriculture in the Jumla district in western Nepal (29.27443900, 82.19332200; 2540 m msl) and one genotype of commercial common bean from the sub-tropical Chitwan district in central Nepal (27.65186564, 84.34869288; 256 m masl) were evaluated for resistance against the pathogen under screenhouse and field conditions. All were found highly susceptible to the pathogen and the highest lesion length (3.02 cm) was measured in the Rato Male Simi followed by Rato Sano Chhirke Simi (2.40 cm) in Chitwan conditions. Three chemical fungicides—SAAF™ (carbendazim 12% + mancozeb 63% WP), Vitavax® (carboxin 37.5% + thiram 37.5% DS), and Nativo® (tebuconazole 50% + trifloxystrobin 25% w/w (75 WG)—and three biocontrol agents—Trichoderma viride (109 cfu/mL), Pseudomonas fluorescens (109 cfu/mL), and Bacillus subtilis (108 cfu/mL)—were evaluated as seed and soil treatments in fourteen different combinations against R. solani. SAAF™ and Vitavax® were found highly effective as they completely suppressed the incidence of pre-emergence damping off. SAAF™ was equally effective followed by Vitavax® and Nativo® in suppressing post-emergence damping off. On the other hand, the highest disease incidence (26.63%) was recorded in treatment where seed treatment with Pseudomonas fluorescens formulation at the rate of 10 g per kg of FYM slurry along with soil application with Pseudomonas fluorescens formulation at the rate of 10 kg per ha with 50 kg FYM was applied, whereas the lowest disease incidence (4.96%) occurred in SAAF™ for both seed and soil applications. Highest grain yield (4125 kg/ha) was recorded on Nativo® where seed treatment at the rate of 1.5 g per kg along with soil drenching at the rate of 1.5 g per liter was used. Thus, it can be concluded that the best control for pre-emergence damping off was achieved by SAAF™ where seed treatment at the rate of 2 g per kg along with soil drenching at the rate of 2 g per liter and Vitavax® as seed treatment at the rate of 2 g per kg along with soil drenching at the rate of 2 g per liter was used, while the best control of post-emergence damping off was achieved with combined seed treatment and soil treatment with SAAF™. There was no incidence of web blight throughout the growing period. Our findings could be useful in devising strategies for the integrated management of R. solani causing root rot disease in common beans. Full article
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13 pages, 1220 KiB  
Article
An Evaluation of Spodoptera littoralis and Spodoptera exigua as Natural Prey for the Generalist Predator Chrysoperla carnea
by Agustín Garzón, Óscar Giovanni Gutiérrez-Cárdenas, Beatriz Dáder, Pilar Medina and Ángeles Adán
Insects 2025, 16(2), 167; https://doi.org/10.3390/insects16020167 - 5 Feb 2025
Viewed by 782
Abstract
Chrysoperla carnea (Stephens) is a common generalist predator in agroecosystems, frequently used for the control of soft-bodied pests in augmentative releases. Better knowledge of its interactions with secondary natural prey is necessary to optimize field biocontrol performance. This work evaluates the eggs and [...] Read more.
Chrysoperla carnea (Stephens) is a common generalist predator in agroecosystems, frequently used for the control of soft-bodied pests in augmentative releases. Better knowledge of its interactions with secondary natural prey is necessary to optimize field biocontrol performance. This work evaluates the eggs and early larvae of Spodoptera exigua (Hübner) and Spodoptera littoralis (Boisduval) as natural prey for the third larval instar of C. carnea, and the predator preferences for different prey stages under varying conditions, assessing the impact on its life cycle and reproduction, in comparison with commercial diets based on Ephestia kuehniella Zeller eggs. Prey choice results were uniform for each dual prey combination irrespective of previous predator conditions (larvae number or fasting). Chrysoperla carnea did not show preference for Ephestia or Spodoptera eggs, but preferred eggs prior to larvae of the natural prey. Diets based on the frozen eggs of natural and factitious prey species showed similar effects on the development and reproduction of predator, but when C. carnea fed on S. exigua larvae, several negative effects were assessed, such as longer preimaginal development, lower adult emergence, and a reduced fecundity. These results are helpful for improving the use of lacewings as biocontrol agents in pest control programs. Full article
(This article belongs to the Section Insect Pest and Vector Management)
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15 pages, 2841 KiB  
Article
Biocontrol Potential of Trichoderma spp. Against Phytophthora ramorum
by Elisa Becker, Nirusan Rajakulendran and Simon Francis Shamoun
Pathogens 2025, 14(2), 136; https://doi.org/10.3390/pathogens14020136 - 2 Feb 2025
Cited by 1 | Viewed by 1899
Abstract
Phytophthora ramorum, the cause of Sudden Oak Death and related diseases, threatens over 130 tree and shrub species. We evaluated the biocontrol potential of isolates from nine Trichoderma species against P. ramorum using growth-rate studies, dual-culture assays, and culture-filtrate assays. Results showed [...] Read more.
Phytophthora ramorum, the cause of Sudden Oak Death and related diseases, threatens over 130 tree and shrub species. We evaluated the biocontrol potential of isolates from nine Trichoderma species against P. ramorum using growth-rate studies, dual-culture assays, and culture-filtrate assays. Results showed significant variation in Trichoderma growth rates and biocontrol potential. Some isolates exhibited rapid growth, effective overgrowth, and lethal effects against P. ramorum and produced potent antagonistic metabolites. Faster growth rates only partially correlated with biocontrol efficacy, indicating that factors beyond growth, such as metabolite production, play significant roles. Notably, isolates of T. koningii, T. viride, and the commercial product SoilGard™ (T. virens) showed promising efficacy. We calculated a combined biocontrol variable to rank isolates based on vigour and efficacy to aid in identifying promising candidates. Our findings support the use of Trichoderma spp. as biocontrol agents against P. ramorum and underscore the need for a multifaceted approach to selecting and optimizing isolates. Our evaluation demonstrated the importance of using different assays to assess specific mechanisms of action of biocontrol candidates. Future research should further explore these interactions to enhance the sustainable management of P. ramorum. Full article
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23 pages, 757 KiB  
Review
Fungal Biocontrol Agents in the Management of Postharvest Losses of Fresh Produce—A Comprehensive Review
by Phathutshedzo Ramudingana, Ndivhuho Makhado, Casper Nyaradzai Kamutando, Mapitsi Silvester Thantsha and Tshifhiwa Paris Mamphogoro
J. Fungi 2025, 11(1), 82; https://doi.org/10.3390/jof11010082 - 20 Jan 2025
Cited by 4 | Viewed by 3311
Abstract
Postharvest decay of vegetables and fruits presents a significant threat confronting sustainable food production worldwide, and in the recent times, applying synthetic fungicides has become the most popular technique of managing postharvest losses. However, there are concerns and reported proofs of hazardous impacts [...] Read more.
Postharvest decay of vegetables and fruits presents a significant threat confronting sustainable food production worldwide, and in the recent times, applying synthetic fungicides has become the most popular technique of managing postharvest losses. However, there are concerns and reported proofs of hazardous impacts on consumers’ health and the environment, traceable to the application of chemical treatments as preservatives on fresh produce. Physical methods, on the other hand, cause damage to fresh produce, exposing it to even more infections. Therefore, healthier and more environmentally friendly alternatives to existing methods for managing postharvest decays of fresh produce should be advocated. There is increasing consensus that utilization of biological control agents (BCAs), mainly fungi, represents a more sustainable and effective strategy for controlling postharvest losses compared to physical and chemical treatments. Secretion of antifungal compounds, parasitism, as well as competition for nutrients and space are the most common antagonistic mechanisms employed by these BCAs. This article provides an overview of (i) the methods currently used for management of postharvest diseases of fresh produce, highlighting their limitations, and (ii) the use of biocontrol agents as an alternative strategy for control of such diseases, with emphasis on fungal antagonists, their mode of action, and, more importantly, their advantages when compared to other methods commonly used. We therefore hypothesize that the use of fungal antagonists for prevention of postharvest loss of fresh produce is more effective compared to physical and chemical methods. Finally, particular attention is given to the gaps observed in establishing beneficial microbes as BCAs and factors that hamper their development, particularly in terms of shelf life, efficacy, commercialization, and legislation procedures. Full article
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22 pages, 3979 KiB  
Article
Nutrient Formulation—A Sustainable Approach to Combat PRSV and Enhance Productivity in Papaya
by Kavitha Chinnasamy, Naveen Kumar Krishnan, Moganapathi Balasubramaniam, Reena Balamurugan, Pugalendhi Lakshmanan, Kalarani M. Karuppasami, Manoranjitham S. Karuppannan, Elaiyabharathi Thiyagarajan, Senthil Alagarswamy and Saraladevi Muthusamy
Agriculture 2025, 15(2), 201; https://doi.org/10.3390/agriculture15020201 - 17 Jan 2025
Cited by 2 | Viewed by 1270
Abstract
Papaya (Carica papaya L.) is a highly nutritious fruit crop cultivated commercially in the tropical and subtropical regions of the world. Being a shallow rooted fruit crop, it requires frequent application of nutrients. Papaya is highly remunerative due to its high productivity [...] Read more.
Papaya (Carica papaya L.) is a highly nutritious fruit crop cultivated commercially in the tropical and subtropical regions of the world. Being a shallow rooted fruit crop, it requires frequent application of nutrients. Papaya is highly remunerative due to its high productivity and responds positively to nutrient application. Papaya Ring Spot Virus (PRSV) is a major threat to papaya production, which causes severe yield loss and reduces fruit quality. To combat PRSV and enhance productivity, a nutrient formulation was developed by combining organic, inorganic nutrient sources with biocontrol agents to improve the health and vigor of the plants. Experiments were conducted to standardize the application time and evaluate the efficacy of nutrient formulation in enhancing yield, and to combat papaya ring spot virus (PRSV) incidence in papaya from January 2021 to December 2023 at Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India. The results revealed that foliar application of nutrient formulation at monthly intervals from the 3rd to the 7th month after planting (MAP) along with regular application of recommended dose of fertilizers (RDF) at bimonthly intervals from the 3rd MAP significantly increased the yield (37.79% and 30.57% in TNAU Papaya CO 8 and Red Lady, respectively) and reduced PRSV disease incidence (22.49% in TNAU Papaya CO 8 and 16.53% in Red Lady). Metabolomics study indicates that foliar spray of nutrient formulation enhanced the activators and precursors of defense enzymes, viz., peroxidase (PO), polyphenol oxidase (PPO), phenyl ammonia lyase (PAL), catalase (CAT) and nitrate reductase (NRase) in the sprayed plants over unsprayed control. Therefore, the sprayed plants exhibited tolerance to PRSV incidence by maintaining vigor and induced systemic resistance by the defense enzymes. Full article
(This article belongs to the Special Issue Foliar Fertilization for Sustainable Crop Production)
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Article
Bacillus cabrialesii subsp. cabrialesii Strain TE5: A Promising Biological Control Bacterium Against the Causal Agent of Spot Blotch in Wheat
by Ixchel Campos-Avelar, Michelle Fabiela García Jaime, Pamela Helué Morales Sandoval, Fannie Isela Parra-Cota and Sergio de los Santos Villalobos
Plants 2025, 14(2), 209; https://doi.org/10.3390/plants14020209 - 13 Jan 2025
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Abstract
Strain TE5 was isolated from a wheat (Triticum turgidum L. subsp. durum) rhizosphere grown in a commercial field of wheat in the Yaqui Valley in Mexico. In this work, we present strain TE5 as a promising biological control agent against Bipolaris [...] Read more.
Strain TE5 was isolated from a wheat (Triticum turgidum L. subsp. durum) rhizosphere grown in a commercial field of wheat in the Yaqui Valley in Mexico. In this work, we present strain TE5 as a promising biological control agent against Bipolaris sorokiniana. First, after its genome sequencing through Illumina NovaSeq, this strain showed a genome size of 4,262,927 bp, with a 43.74% G + C content, an N50 value of 397,059 bp, an L50 value of 4 bp, and 41 contigs (>500 bp). Taxonomical affiliation was carried out by using overall genome relatedness indexes (OGRIs) and the construction of a phylogenomic tree based on the whole genome. The results indicated that strain TE5 identifies with Bacillus cabrialesii subsp. cabrialesii. Genomic annotation using Rapid Annotation Using Subsystems Technology (RAST) and Rapid Prokaryotic Genome Annotation (Prokka) indicated the presence of 4615 coding DNA sequences (CDSs) distributed across 330 subsystems, which included gene families associated with biocontrol, stress response, and iron competition. Furthermore, when the antiSMASH 7.1 platform was used for genome mining, the results indicated the presence of seven putative biosynthetic gene clusters related to the production of biocontrol metabolites, namely subtilosin A, bacillibactin, fengycin, bacillaene, bacilysin, surfactin, and rhizocticin A. Moreover, the antifungal activity of strain TE5 and its cell-free extract (CFE) was evaluated against Bipolaris sorokiniana, an emergent wheat pathogen. The results of in vitro dual confrontation showed fungal growth inhibition of 67% by strain TE5. Additionally, its CFE almost completely inhibited (93%) the growth of the studied phytopathogenic fungus on liquid media. Further observations of the impact of these bacterial metabolites on fungal spore germination exhibited inhibition of fungal spores through degrading the germinative hypha, avoiding mycelium development. Finally, the protective effect of strain TE5 against Bipolaris sorokiniana was evaluated for wheat seedlings. The results showed a significant decrease (83%) in disease severity in comparison with the plant infection without inoculation of the biological control agent. Thus, this work proposes Bacillus cabrialesii subsp. cabrialesii strain TE5 as a promising biological control agent against the wheat pathogen Bipolaris sorokiniana while suggesting lipopeptides as the potential mode of action, together with plant growth and defense stimulation. Full article
(This article belongs to the Special Issue Occurrence and Control of Plant Bacterial Diseases)
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