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Keywords = cold acclimatization

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17 pages, 5753 KiB  
Protocol
Protoplast-Based Regeneration Enables CRISPR/Cas9 Application in Two Temperate Japonica Rice Cultivars
by Marion Barrera, Blanca Olmedo, Matías Narváez, Felipe Moenne-Locoz, Anett Rubio, Catalina Pérez, Karla Cordero-Lara and Humberto Prieto
Plants 2025, 14(13), 2059; https://doi.org/10.3390/plants14132059 - 5 Jul 2025
Viewed by 594
Abstract
Rice (Oryza sativa L.), a staple food for over half of the global population, plays a pivotal role in food security. Among its two primary groups, japonica and indica, temperate japonica varieties are particularly valued for their high-quality grain and culinary [...] Read more.
Rice (Oryza sativa L.), a staple food for over half of the global population, plays a pivotal role in food security. Among its two primary groups, japonica and indica, temperate japonica varieties are particularly valued for their high-quality grain and culinary uses. Although some of these varieties are adapted to cooler climates, they often suffer from reduced productivity or increased disease susceptibility when cultivated in warmer productive environments. These limitations underscore the need for breeding programs to incorporate biotechnological tools that can enhance the adaptability and resilience of the plants. However, New Genomic Techniques (NGTs), including CRISPR-Cas9, require robust in vitro systems, which are still underdeveloped for temperate japonica genotypes. In this study, we developed a reproducible and adaptable protocol for protoplast isolation and regeneration from the temperate japonica cultivars ‘Ónix’ and ‘Platino’ using somatic embryos as the starting tissue. Protoplasts were isolated via enzymatic digestion (1.5% Cellulase Onozuka R-10 and 0.75% Macerozyme R-10) in 0.6 M AA medium over 18–20 h at 28 °C. Regeneration was achieved through encapsulation in alginate beads and coculture with feeder extracts in 2N6 medium, leading to embryogenic callus formation within 35 days. Seedlings were regenerated in N6R and N6F media and acclimatized under greenhouse conditions within three months. The isolated protoplast quality displayed viability rates of 70–99% within 48 h and supported transient PEG-mediated transfection with GFP. Additionally, the transient expression of a gene editing CRISPR-Cas9 construct targeting the DROUGHT AND SALT TOLERANCE (OsDST) gene confirmed genome editing capability. This protocol offers a scalable and genotype-adaptable system for protoplast-based regeneration and gene editing in temperate japonica rice, supporting the application of NGTs in the breeding of cold-adapted cultivars. Full article
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22 pages, 1841 KiB  
Review
The Extended Synaptotagmins of Physcomitrium patens
by Alexander Kaier and Maria Ntefidou
Plants 2025, 14(7), 1027; https://doi.org/10.3390/plants14071027 - 25 Mar 2025
Viewed by 854
Abstract
Membrane contact sites (MCSs) between the endoplasmic reticulum and the plasma membrane enable the transport of lipids without membrane fusion. Extended Synaptotagmins (ESYTs) act at MCSs, functioning as tethers between two membrane compartments. In plants, ESYTs have been mainly investigated in A. thaliana [...] Read more.
Membrane contact sites (MCSs) between the endoplasmic reticulum and the plasma membrane enable the transport of lipids without membrane fusion. Extended Synaptotagmins (ESYTs) act at MCSs, functioning as tethers between two membrane compartments. In plants, ESYTs have been mainly investigated in A. thaliana and shown to maintain the integrity of the plasma membrane, especially during stress responses like cold acclimatization, mechanical trauma, and salt stress. ESYTs are present at the MCSs of plasmodesmata, where they regulate defense responses by modulating cell-to-cell transfer of pathogens. Here, the analysis of ESYTs was expanded to the bryophyte Physcomitrium patens, an extant representative of the earliest land plant lineages. P. patens was found to contain a large number of ESYTs, distributed over all previously established classes and an additional class not present in A. thaliana. Motif discovery identified regions in the Synaptotagmin-like mitochondrial (SMP) domain that may explain phylogenetic relationships as well as protein function. The adaptation mechanisms of P. patens necessary to conquer land and its simple tissue structure make it highly suitable as a model organism to study ESYT functions in tip growth, stress responses, and plasmodesmata-mediated transport, and open new directions of research regarding the function of MCSs in cellular processes and plant evolution. Full article
(This article belongs to the Section Plant Cell Biology)
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24 pages, 5731 KiB  
Article
Temperature-Induced Seasonal Dynamics of Brain Gangliosides in Rainbow Trout (Oncorhynchus mykiss Walbaum) and Common Carp (Cyprinus carpio L.)
by Valentina Pavić, Barbara Viljetić, Senka Blažetić, Irena Labak, Elizabeta Has-Schön and Marija Heffer
Life 2024, 14(10), 1273; https://doi.org/10.3390/life14101273 - 7 Oct 2024
Viewed by 1359
Abstract
This study aimed to determine the expression and distribution of gangliosides in specific regions of the brains of rainbow trout (Oncorhynchus mykiss Walbaum) and common carp (Cyprinus carpio L.) with regard to seasonal temperature changes. Seasonal changes in ganglioside expression and [...] Read more.
This study aimed to determine the expression and distribution of gangliosides in specific regions of the brains of rainbow trout (Oncorhynchus mykiss Walbaum) and common carp (Cyprinus carpio L.) with regard to seasonal temperature changes. Seasonal changes in ganglioside expression and distribution within the species were expected. The natural ecosystems of these fishes differ significantly due to their distinct habitat preferences, geographic distributions, and environmental requirements. Based on the fact that the common carp is eurythermic and adapts to a wide range of temperatures, while the rainbow trout is stenothermic and thrives in a narrower temperature range, it was expected that these species would exhibit distinct patterns of ganglioside modification as part of their adaptive response to temperature fluctuations. Immunohistochemistry using specific antibodies for the major brain gangliosides (GM1, GD1a, GD1b, GT1b), along with the Svennerholm method for quantifying sialic acid bound to gangliosides, revealed that cold acclimatization led to an increase in polysialylated gangliosides in the common carp brain and an increase in trisialogangliosides in the rainbow trout brain. Immunohistochemical analysis also identified region-specific changes in ganglioside expression, suggesting specific functional roles in neuronal adaptation. These results supported the hypothesis that the composition and distribution of brain gangliosides change in response to seasonal thermal shifts as part of the adaptive response. The results underscore the importance of gangliosides in neuronal function and adaptation to environmental stimuli, with implications for understanding fish resilience to temperature changes. This study offers valuable insights into species’ temperature adaptation, with implications for physiological and ecological management and improved aquaculture practices. Future research could expand the species scale, study molecular mechanisms and regulatory pathways in ganglioside metabolism, and examine ganglioside interactions with membrane proteins and lipids for a deeper understanding of thermal adaptation. Full article
(This article belongs to the Section Animal Science)
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26 pages, 853 KiB  
Review
Molecular Mechanisms Underlying Freezing Tolerance in Plants: Implications for Cryopreservation
by Magdalena Białoskórska, Anna Rucińska and Maja Boczkowska
Int. J. Mol. Sci. 2024, 25(18), 10110; https://doi.org/10.3390/ijms251810110 - 20 Sep 2024
Cited by 9 | Viewed by 3226
Abstract
Cryopreservation is a crucial technique for the long-term ex situ conservation of plant genetic resources, particularly in the context of global biodiversity decline. This process entails freezing biological material at ultra-low temperatures using liquid nitrogen, which effectively halts metabolic activities and preserves plant [...] Read more.
Cryopreservation is a crucial technique for the long-term ex situ conservation of plant genetic resources, particularly in the context of global biodiversity decline. This process entails freezing biological material at ultra-low temperatures using liquid nitrogen, which effectively halts metabolic activities and preserves plant tissues over extended periods. Over the past seven decades, a plethora of techniques for cryopreserving plant materials have been developed. These include slow freezing, vitrification, encapsulation dehydration, encapsulation–vitrification, droplet vitrification, cryo-plates, and cryo-mesh techniques. A key challenge in the advancement of cryopreservation lies in our ability to understand the molecular processes underlying plant freezing tolerance. These mechanisms include cold acclimatization, the activation of cold-responsive genes through pathways such as the ICE–CBF–COR cascade, and the protective roles of transcription factors, non-coding RNAs, and epigenetic modifications. Furthermore, specialized proteins, such as antifreeze proteins (AFPs) and late embryogenesis abundant (LEA) proteins, play crucial roles in protecting plant cells during freezing and thawing. Despite its potential, cryopreservation faces significant challenges, particularly in standardizing protocols for a wide range of plant species, especially those from tropical and subtropical regions. This review highlights the importance of ongoing research and the integration of omics technologies to improve cryopreservation techniques, ensuring their effectiveness across diverse plant species and contributing to global efforts regarding biodiversity conservation. Full article
(This article belongs to the Special Issue Advance in Plant Abiotic Stress: 2nd Edition)
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15 pages, 3744 KiB  
Article
Cold Atmospheric Plasma (CAP) Treatment of In Vitro Cultivated Plum Plantlets—A Possible Way to Improve Growth and Inactivate Plum Pox Virus (PPV)
by Lilyana Nacheva, Snezhana Milusheva, Plamena Marinova, Nataliya Dimitrova and Evgenia Benova
Processes 2024, 12(7), 1387; https://doi.org/10.3390/pr12071387 - 3 Jul 2024
Cited by 1 | Viewed by 1233
Abstract
Plasma technology, relatively new in the fields of biomedicine, agriculture, and ecology, is the subject of intensive research as a prospective means of decontamination of various microorganisms (bacteria, viruses, and fungi). The objectives of the present study were to follow the effect of [...] Read more.
Plasma technology, relatively new in the fields of biomedicine, agriculture, and ecology, is the subject of intensive research as a prospective means of decontamination of various microorganisms (bacteria, viruses, and fungi). The objectives of the present study were to follow the effect of cold atmospheric plasma (CAP) treatment on in vitro grown plum plants (Prunus domestica L. ‘Kyustendilska sinya’ cv.) and the possibility of eradicating or inactivating plum pox virus (PPV) causing Sharka disease by CAP. The source tree is naturally co-infected by PPV (both M and D strains). In the experiments, two different plasma sources were used. First, a surface-wave-sustained Argon plasma torch and second, an underwater diaphragm discharge. For the treatments, nodal segments (10 mm in length) from in vitro cultured plum plants with or without one leaf were prepared. Apical shoots from treated plants (PPV-positive and negative clones as well non-treated controls) were cultivated in vitro for four passages. Then they were rooted and acclimatized to ex vitro conditions, and their virus status was observed periodically for more than 3 years after treatment for the appearance of Sharka symptoms. All plants, acclimatized to ex vitro conditions, were tested for PPV by immune capture–reverse transcription–polymerase chain reaction (IC-RT-PCR). As a first step in understanding the plasma treatment of living plants, a plasma treatment variant causing no damage must be established; this has been done in our previous works. Treatment of plants by plasma with parameters that have been carefully selected leads to better development than the non-treated plants. In the treated in vitro plants, no significant differences were found in the number and length of shoots compared to the control plantlets. In ex vitro acclimated plants, greater stem length was reported, but no differences in leaf number were observed. No significant differences in growth were recorded between the control and plants that were treated twice or three times. At this stage, 3 years after ex vitro cultivation in a greenhouse, Sharka symptoms were not registered on treated in vitro negative PPV plants, and the virus was not detected by IC-RT-PCR. Very mild symptoms were showing in CAP-treated PPV-positive plants. Development of typical Sharka symptoms on non-treated controls were observed. Full article
(This article belongs to the Section Chemical Processes and Systems)
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11 pages, 1928 KiB  
Article
In Vitro Micropropagation of the Vulnerable Chilean Endemic Alstroemeria pelegrina L.
by Francesca Guerra, Ricardo Cautín and Mónica Castro
Horticulturae 2024, 10(7), 674; https://doi.org/10.3390/horticulturae10070674 - 25 Jun 2024
Cited by 2 | Viewed by 1799
Abstract
The Chilean rhizomatous geophyte Alstroemeria pelegrina (A. pelegrina), a species endemic to the Coquimbo (31°45′ S) and Valparaíso (33°12′ S) regions, is currently classified as vulnerable and experiencing population decline due to loss of habitat. This heightened threat underscores the need [...] Read more.
The Chilean rhizomatous geophyte Alstroemeria pelegrina (A. pelegrina), a species endemic to the Coquimbo (31°45′ S) and Valparaíso (33°12′ S) regions, is currently classified as vulnerable and experiencing population decline due to loss of habitat. This heightened threat underscores the need to develop effective mass propagation techniques to support its conservation efforts. Consequently, the present study aimed to establish an optimized in vitro propagation protocol tailored specifically for A. pelegrina to facilitate its large-scale propagation and promote the preservation of this vulnerable geophyte. In our experiment, explants obtained from in vitro germination were used. These explants were then cultured on a Murashige and Skoog (MS) medium solidified with agar (6 g L−1) and supplemented with 2.22 μM 6-Benzylaminopurine (BAP) and 30 g L−1 sucrose. The results indicated an average of 4.6 new shoots produced per initial explant. The implementation of light-emitting diode (LED) illumination with a red:blue ratio of 3:1 and 2.22 μM BAP resulted in an average shoot length of 6.2 cm. For rhizome induction, the addition of either 5.37 μM 1-naphthaleneacetic acid (NAA) or 5.37 μM indole-3-butyric acid (IBA) resulted in average rhizome lengths of 1.9 cm and 1.7 cm, respectively, with fresh weights of the vitroplants ranging from 2.9 g to 3.1 g, and rooting percentages between 100% and 96%, respectively. Notably, the survival rate of rooted plants obtained through in vitro propagation was 90% after a 4-week acclimatization period in a cold greenhouse, indicating the efficacy of the developed protocol for mass propagation and conservation efforts of this vulnerable geophyte species. Full article
(This article belongs to the Special Issue Tissue Culture and Micropropagation Techniques of Horticultural Crops)
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26 pages, 1466 KiB  
Review
Molecular Mechanisms of CBL-CIPK Signaling Pathway in Plant Abiotic Stress Tolerance and Hormone Crosstalk
by Cengiz Kaya, Ferhat Uğurlar and Ioannis-Dimosthenis S. Adamakis
Int. J. Mol. Sci. 2024, 25(9), 5043; https://doi.org/10.3390/ijms25095043 - 6 May 2024
Cited by 14 | Viewed by 3609
Abstract
Abiotic stressors, including drought, salt, cold, and heat, profoundly impact plant growth and development, forcing elaborate cellular responses for adaptation and resilience. Among the crucial orchestrators of these responses is the CBL-CIPK pathway, comprising calcineurin B-like proteins (CBLs) and CBL-interacting protein kinases (CIPKs). [...] Read more.
Abiotic stressors, including drought, salt, cold, and heat, profoundly impact plant growth and development, forcing elaborate cellular responses for adaptation and resilience. Among the crucial orchestrators of these responses is the CBL-CIPK pathway, comprising calcineurin B-like proteins (CBLs) and CBL-interacting protein kinases (CIPKs). While CIPKs act as serine/threonine protein kinases, transmitting calcium signals, CBLs function as calcium sensors, influencing the plant’s response to abiotic stress. This review explores the intricate interactions between the CBL-CIPK pathway and plant hormones such as ABA, auxin, ethylene, and jasmonic acid (JA). It highlights their role in fine-tuning stress responses for optimal survival and acclimatization. Building on previous studies that demonstrated the enhanced stress tolerance achieved by upregulating CBL and CIPK genes, we explore the regulatory mechanisms involving post-translational modifications and protein–protein interactions. Despite significant contributions from prior research, gaps persist in understanding the nuanced interplay between the CBL-CIPK system and plant hormone signaling under diverse abiotic stress conditions. In contrast to broader perspectives, our review focuses on the interaction of the pathway with crucial plant hormones and its implications for genetic engineering interventions to enhance crop stress resilience. This specialized perspective aims to contribute novel insights to advance our understanding of the potential of the CBL-CIPK pathway to mitigate crops’ abiotic stress. Full article
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15 pages, 8610 KiB  
Article
Differentiating Leaf Structures and Physiological Responses to Freezing Stress of Mangrove Kandelia obovata from Different Provenances
by Wenzhen Xin, Xia An, Huizi Liu, Shuangshuang Liu, Sheng Yang, Xin Wei, Jiali Zhao, Renan Lin, Xing Liu and Qiuxia Chen
Horticulturae 2024, 10(2), 182; https://doi.org/10.3390/horticulturae10020182 - 17 Feb 2024
Cited by 3 | Viewed by 1713
Abstract
Kandelia obovata (Rhizophoraceae) is the most cold-tolerant mangrove species and has been widely used in coastal wetland ecological restoration due to its specific viviparous phenomenon, beautiful shape, and unique floral pattern. Due to long-term adaptation to their local environment, the phenotypic characteristics and [...] Read more.
Kandelia obovata (Rhizophoraceae) is the most cold-tolerant mangrove species and has been widely used in coastal wetland ecological restoration due to its specific viviparous phenomenon, beautiful shape, and unique floral pattern. Due to long-term adaptation to their local environment, the phenotypic characteristics and stress resistance of widely distributed plants of the same species often differentiate across different locations. The capacity for cold resistance is closely linked to the physiological and structural characteristics of plants. Herein, we explored the temporal variations in the leaf structure and physiological status of K. obovata under −5.5 °C from different areas such as Jiulongjiang Estuary (JLJ, 24°25′ N), Fujian Province, and Longgang City (LG, 27°34′ N) and Jiaojiang District (JJ, 28°67′ N), Zhejiang Province. The morphological variations implied that the cold resistance of K. obovata obviously strengthened after the northward migration and acclimatization, in the following order: LG > JJ > JLJ. More specifically, after exposure to a sustained low temperature, the relative conductivity (REC), an index widely used to evaluate the degree of plant damage, remarkably increased from 33.62 ± 2.39 to 63.73 ± 3.81, 31.20 ± 1.63 to 49.48 ± 1.12, and 23.75 ± 0.13 to 54.24 ± 1.45 for JLJ, LG, and JJ, respectively (p < 0.05). Additionally, the palisade-to-spongy tissue ratio (P/I) of JLJ and JJ decreased from 0.78 ± 0.05 and 0.75 ± 0.03 to 0.5 ± 0.04 and 0.64 ± 0.02 (p < 0.05), whereas no significant changes were found in LG (p > 0.05). The SOD activity of LG significantly kept increasing, with values increased from 352.49 ± 10.38 to 477.65 ± 1.78 U·g−1, whereas no apparent changes in JLJ and JJ were observed with the sustained low temperature. The results of this study improved our understanding of the response of K. obovata to freezing stress, which could provide a sound theoretical foundation for cultivating cold-resistant varieties, as well as expanding mangrove plantations in higher latitudes. Full article
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5 pages, 538 KiB  
Proceeding Paper
In Vitro Preservation of Somatic Seeds and Nonencapsulated Hemp Shoot Tips
by Mariola Dreger, Aleksandra Deja, Milena Szalata and Ryszard Słomski
Biol. Life Sci. Forum 2023, 27(1), 15; https://doi.org/10.3390/IECAG2023-15146 - 18 Oct 2023
Viewed by 812
Abstract
Synthetic seed technology and cold storage methods provide genetic uniformity, paving the way for pest- and disease-free plants that are easy to handle. The aim of this study was to develop protocols for the cold storage of nonencapsulated and alginate-capsulated explants of Cannabis [...] Read more.
Synthetic seed technology and cold storage methods provide genetic uniformity, paving the way for pest- and disease-free plants that are easy to handle. The aim of this study was to develop protocols for the cold storage of nonencapsulated and alginate-capsulated explants of Cannabis sativa L. Axillary shoot tips derived from in vitro-grown plants that were used as explants and stored for up to 9 months at 4 °C in the dark. Somatic seeds were produced in 3% sodium alginate and Murashige and Skoog (MS) medium salt and stored for up to 3 months. After 6 months of cold storage, the highest regrowth of 45% was recorded for the nonencapsulated explants. The recovery of somatic seeds was 90% under the same storage condition after 3 months. Well-developed, regenerated plants from encapsulated explants successfully acclimatized. Full article
(This article belongs to the Proceedings of The 3rd International Electronic Conference on Agronomy)
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15 pages, 2065 KiB  
Article
Analysis of the Selection Signal of the Tibetan Black Chicken Genome Based on Whole-Genome Sequencing
by Jing Feng, Wei Zhu, Hairen Shi, Da Peng, Lei Zang, Yan Wang, Luobu ZhaXi, Jiancai BaiMa, Felix Kwame Amevor, Xiaoqi Wang, Xueying Ma and Xiaoling Zhao
Genes 2023, 14(9), 1672; https://doi.org/10.3390/genes14091672 - 24 Aug 2023
Cited by 3 | Viewed by 2564
Abstract
Background: The Tibetan chicken has adapted well to high altitudes genetically after its long-term habitation in the plateau. In this study, we analyzed the selection signal of Tibetan black chickens (TBCs) and discovered genes associated with the characteristics of germplasm. Methods: Whole-genome sequencing [...] Read more.
Background: The Tibetan chicken has adapted well to high altitudes genetically after its long-term habitation in the plateau. In this study, we analyzed the selection signal of Tibetan black chickens (TBCs) and discovered genes associated with the characteristics of germplasm. Methods: Whole-genome sequencing (WGS) was used to identify the single-nucleotide polymorphism (SNP) markers and genetic structures in the genome of Tibetan black chickens. Further, we performed a comparative population genomics analysis between the genomic data obtained in this present study and the genomic data for five wild red jungle fowls (RJFs) accessed from the NCBI database (GenBank accession number PRJNA241474). Thereafter, the Fst and Pi selections were used to identify genes under positive selection in the Tibetan black chicken genome. Results: A total of 9,490,690 SNPs were identified in the Tibetan black chickens. In addition, the results from the gene ontology (GO) analysis showed that 732 genes of TBCs were enriched in a total of 210 GO terms with specific molecular functions such as regulation of cellular catabolic process, the MAPK signaling pathway, regulation of ion transport, growth, morphogenesis and lung alveolus development which may provide a better mechanism to facilitate oxygen transport and utilization in TBCs. Moreover, the results from the KEGG analysis showed that 732 genes of the TBCs were significantly enriched in the calcium signaling pathway, circadian entrainment (ADCY1, GNG7 and PER3), oxytocin signaling pathway and pathways of multiple neurodegeneration diseases. In addition, the CD86 antigen (CD86) was identified as a gene associated with the immune response in chickens. It was also revealed that genes such as TRIT1, HPCAL4, NT5C1A and HEYL were discovered under selection in Tibetan black chickens on chromosome 23. These genes may be related to the local adaptive characteristics of Tibetan black chickens, for instance, NT5C1A and HEYL may be involved in the high-altitude adaption of oxygen delivery in Tibetan black chickens. Conclusions: In summary, we found that selection mainly affects the disease resistance and cold acclimatization of Tibetan black chickens. Hence, these results may provide important genetic information for the evolution and breeding of Tibetan black chickens. Full article
(This article belongs to the Special Issue Poultry Breeding: Genetics and Genomics)
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9 pages, 909 KiB  
Review
Winter Is (Not) Coming: Is Climate Change Helping Drosophila suzukii Overwintering?
by Sara Sario, José Melo-Ferreira and Conceição Santos
Biology 2023, 12(7), 907; https://doi.org/10.3390/biology12070907 - 25 Jun 2023
Cited by 12 | Viewed by 2677
Abstract
Anthropogenic challenges, particularly climate change-associated factors, are strongly impacting the behavior, distribution, and survival of insects. Yet how these changes affect pests such as Drosophila suzukii, a cosmopolitan pest of soft-skinned small fruits, remains poorly understood. This polyphagous pest is chill-susceptible, with [...] Read more.
Anthropogenic challenges, particularly climate change-associated factors, are strongly impacting the behavior, distribution, and survival of insects. Yet how these changes affect pests such as Drosophila suzukii, a cosmopolitan pest of soft-skinned small fruits, remains poorly understood. This polyphagous pest is chill-susceptible, with cold temperatures causing multiple stresses, including desiccation and starvation, also challenging the immune system. Since the invasion of Europe and the United States of America in 2009, it has been rapidly spreading to several European and American countries (both North and South American) and North African and Asian countries. However, globalization and global warming are allowing an altitudinal and latitudinal expansion of the species, and thus the colonization of colder regions. This review explores how D. suzukii adapts to survive during cold seasons. We focus on overwintering strategies of behavioral adaptations such as migration or sheltering, seasonal polyphenism, reproductive adaptations, as well as metabolic and transcriptomic changes in response to cold. Finally, we discuss how the continuation of climate change may promote the ability of this species to survive and spread, and what mitigation measures could be employed to overcome cold-adapted D. suzukii. Full article
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20 pages, 20635 KiB  
Article
Systematic Characterization of GATA Transcription Factors in Liriodendron chinense and Functional Validation in Abiotic Stresses
by Delight Hwarari, Yasmina Radani, Yuanlin Guan, Jinhui Chen and Yang Liming
Plants 2023, 12(12), 2349; https://doi.org/10.3390/plants12122349 - 16 Jun 2023
Cited by 7 | Viewed by 2395
Abstract
The Liriodendron chinense in the Magnoliaceae family is an endangered tree species useful for its socio-economic and ecological benefits. Abiotic stresses (cold, heat, and drought stress), among other factors, affect its growth, development, and distribution. However, GATA transcription factors (TFs) respond to various [...] Read more.
The Liriodendron chinense in the Magnoliaceae family is an endangered tree species useful for its socio-economic and ecological benefits. Abiotic stresses (cold, heat, and drought stress), among other factors, affect its growth, development, and distribution. However, GATA transcription factors (TFs) respond to various abiotic stresses and play a significant role in plant acclimatization to abiotic stresses. To determine the function of GATA TFs in L. chinense, we investigated the GATA genes in the genome of L. chinense. In this study, a total of 18 GATA genes were identified, which were randomly distributed on 12 of the total 17 chromosomes. These GATA genes clustered together in four separate groups based on their phylogenetic relationships, gene structures, and domain conservation arrangements. Detailed interspecies phylogenetic analyses of the GATA gene family demonstrated a conservation of the GATAs and a probable diversification that prompted gene diversification in plant species. In addition, the LcGATA gene family was shown to be evolutionarily closer to that of O. sativa, giving an insight into the possible LcGATA gene functions. Investigations of LcGATA gene duplication showed four gene duplicate pairs by the segmental duplication event, and these genes were a result of strong purified selection. Analysis of the cis-regulatory elements demonstrated a significant representation of the abiotic stress elements in the promoter regions of the LcGATA genes. Additional gene expressions through transcriptome and qPCR analyses revealed a significant upregulation of LcGATA17, and LcGATA18 in various stresses, including heat, cold, and drought stress in all time points analyzed. We concluded that the LcGATA genes play a pivotal role in regulating abiotic stress in L. chinense. In summary, our results provide new insights into understanding of the LcGATA gene family and their regulatory functions during abiotic stresses. Full article
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25 pages, 7122 KiB  
Article
Application of Cold Storage and Short In Vitro Germination for Somatic Embryos of Pinus radiata and P. sylvestris
by Cathie Reeves, Mikko Tikkinen, Tuija Aronen and Jana Krajnakova
Plants 2023, 12(11), 2095; https://doi.org/10.3390/plants12112095 - 24 May 2023
Cited by 4 | Viewed by 2569
Abstract
Somatic embryogenesis (SE) is an advanced vegetative propagation technology that, when used in combination with breeding and cryopreservation, offers the forest industry a powerful tool for the deployment of elite genotypes. Germination and acclimatization are critical and cost-intensive phases in the production of [...] Read more.
Somatic embryogenesis (SE) is an advanced vegetative propagation technology that, when used in combination with breeding and cryopreservation, offers the forest industry a powerful tool for the deployment of elite genotypes. Germination and acclimatization are critical and cost-intensive phases in the production of somatic plants. The efficient conversion of somatic embryos into robust plants is a necessity if a propagation protocol is to be successfully adopted by the industry. In this work, these late phases of the SE protocol of two pine species were investigated. A shortened germination protocol and more controlled acclimatization were investigated for Pinus radiata, testing embryos from 18 embryogenic cell lines. A more simplified protocol, including a cold storage phase, was also compared among 10 of these cell lines. A shortened germination period and more controlled protocols significantly improved the acclimatization of somatic embryos directly from the lab to the glasshouse. When results for all cell lines were pooled, there were significant improvements in all growth characteristics (shoot height, root length, root collar diameter, and root quadrant score). When the more simplified protocol involving cold storage was tested, improvements were seen in the root architecture. For Pinus sylvestris, the late phases of somatic embryogenesis were investigated on seven cell lines in a set of two trials (four to seven cell lines per trial). During the germination phase, a shortened and simplified in vitro period, a cold storage option and basal media were explored. Viable plants were obtained from all treatments. However, there is still the need to improve germination and related protocols together with growing regimes for Pinus sylvestris. The improvements to protocols presented here, particularly for Pinus radiata, result in greater survival and quality of somatic emblings, leading to reduced costs and increased confidence in the technology. Simplified protocols using a cold storage option show great promise and, with some further research, could lead to reductions in the cost of the technology. Full article
(This article belongs to the Special Issue Application of Biotechnology to Woody Propagation)
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18 pages, 1481 KiB  
Review
The Influence of Ambient Temperature on Adipose Tissue Homeostasis, Metabolic Diseases and Cancers
by Rehna Paula Ginting, Ji-Min Lee and Min-Woo Lee
Cells 2023, 12(6), 881; https://doi.org/10.3390/cells12060881 - 12 Mar 2023
Cited by 9 | Viewed by 4175
Abstract
Adipose tissue is a recognized energy storage organ during excessive energy intake and an endocrine and thermoregulator, which interacts with other tissues to regulate systemic metabolism. Adipose tissue dysfunction is observed in most obese mouse models and humans. However, most studies using mouse [...] Read more.
Adipose tissue is a recognized energy storage organ during excessive energy intake and an endocrine and thermoregulator, which interacts with other tissues to regulate systemic metabolism. Adipose tissue dysfunction is observed in most obese mouse models and humans. However, most studies using mouse models were conducted at room temperature (RT), where mice were chronically exposed to mild cold. In this condition, energy use is prioritized for thermogenesis to maintain body temperature in mice. It also leads to the activation of the sympathetic nervous system, followed by the activation of β-adrenergic signaling. As humans live primarily in their thermoneutral (TN) zone, RT housing for mice limits the interpretation of disease studies from mouse models to humans. Therefore, housing mice in their TN zone (~28–30 °C) can be considered to mimic humans physiologically. However, factors such as temperature ranges and TN pre-acclimatization periods should be examined to obtain reliable results. In this review, we discuss how adipose tissue responds to housing temperature and the outcomes of the TN zone in metabolic disease studies. This review highlights the critical role of TN housing in mouse models for studying adipose tissue function and human metabolic diseases. Full article
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18 pages, 1290 KiB  
Article
Vulnerability of the Small-Scale Fishery to Climate Changes in the Northern-Central Adriatic Sea (Mediterranean Sea)
by Francesco Cavraro, Marco Anelli Monti, Sanja Matić-Skoko, Alberto Caccin and Fabio Pranovi
Fishes 2023, 8(1), 9; https://doi.org/10.3390/fishes8010009 - 23 Dec 2022
Cited by 13 | Viewed by 3847
Abstract
Climate change is altering the functioning of ecosystems and species distribution worldwide, with negative impacts on human activities, including fisheries. The Adriatic Sea is an extremely productive area for fisheries, due to the strong outflow of nutrients from rivers and the periodic mixing [...] Read more.
Climate change is altering the functioning of ecosystems and species distribution worldwide, with negative impacts on human activities, including fisheries. The Adriatic Sea is an extremely productive area for fisheries, due to the strong outflow of nutrients from rivers and the periodic mixing of nutrients from the Mediterranean. However, the Adriatic Sea is also a semi-closed basin, where species do not have the ability to move to higher latitudes to avoid warming of the waters. Climate change acts on biodiversity in a variety of ways, such as causing changes in the trophic network—favoring the intake of thermophilic alien species, often in competition with local species—and altering the biological cycles of acclimatized marine species to temperate–cold climates. These problems become critical factors for the survival of species and for fisheries relying on these resources. Within this context, to have estimates of possible modifications of the nektonic community in the near future could be quite useful for preparing adaptation plans. In this paper, using Maximum Entropy models under RCP 4.5 and 8.5 scenarios, we estimated the future habitat suitability for a set of marine nektonic species of different thermal affinity (e.g., cold, temperate and warm species) within GSA17 (Northern and Central Adriatic Sea), among the most productive—and most exploited—areas of the Mediterranean Sea. This study shows how, at the current pace, climate change could modify marine ecosystems to the extent that future habitat suitability will decrease for nearly half of the species considered, with a decrease in landings from 13.5 to 86.9%, depending on the scenario. Only for the blue crab Callinectes sapidus has an increase in habitat suitability been observed. For most of the species considered, temperature was the most important variable to explain the probability of relative presence within the GSA17. On the other hand, GSA17 climatic conditions in the near future under the tested scenarios could become a suitable environment for tropical species, which could find here a suitable habitat, at least in terms of thermal features. Results of the present study can help the management of fishery resources and local markets in the near future, providing information to predict changes in the composition of the aquatic community and draw up management plans that take into account the effects of climate change. Full article
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