Search Results (250)

Background: Transition metal complexes incorporating fluorinated counter anions represent a significant class of compounds with broad applications in industry, pharmaceuticals, and biomedicine. These fluorinated anions are known to enhance the solubility, stability, and reactivity of the complexes, thereby expanding their functional utility in various chemical and biological contexts. Methods: A set of metal(II) complexes of the general formula [MPy₆][B(C₆F₅)₄]₂ where (Py = pyridine, M = Mn (1), Fe (2), Co (3), Ni (4), Cu (5), Zn (6)) have been synthesized by direct reaction of metal halides and pyridine in the presence of Ag[B(C₆F₅)₄]. The complexes were characterized using different techniques to assure their purity, such as elemental analysis (EA), electron paramagnetic resonance (EPR) spectroscopy, thermogravimetric analysis (TGA), ultraviolet–visible (UV–Vis) spectroscopy, ¹¹B-NMR, ¹H-NMR, and FT-IR spectroscopy. The antimicrobial and antifungal properties against different types of bacteria and fungi were studied for all prepared complexes. Results: The synthesized complexes exhibited broad-spectrum antimicrobial activity, demonstrating variable efficacy compared to the reference antibiotic, oxytetracycline (positive control). Notably, complex 6 displayed exceptional antibacterial activity against Streptococcus pyogenes, with a minimum inhibitory concentration (MIC) of 4 µg/mL, outperforming the control (MIC = 8 µg/mL). Complexes 1, 2, and 4 showed promising activity against Shigella flexneri, Klebsiella pneumoniae, and Streptococcus pyogenes, each with MIC values of 8 µg/mL. Conversely, the lowest activity (MIC = 512 µg/mL) was observed for complexes 3, 5, and 6 against Pseudomonas aeruginosa, Escherichia coli, and Klebsiella pneumoniae, respectively. Regarding antifungal properties, complexes 5 and 6 demonstrated the highest activity against Candida albicans, with MIC values of 8 µg/mL, equivalent to that of the positive control, fluconazole. Density functional theory (DFT) calculations confirmed an overall octahedral coordination geometry for all complexes, with tetragonal distortions identified in complexes 3, 4, and 5. Full article

The initial surface reaction of gallium nitride (GaN) grown by atomic layer deposition (GaN-ALD) was investigated using density functional theory (DFT) calculations. Trimethylgallium (TMG) and ammonia (NH₃) were used as gallium (Ga) and nitrogen (N) precursors, respectively. DFT calculations at the B3LYP/6-311+G(2d,p) and 6-31G(d) levels were performed to compute relative energies and optimize chemical structures, respectively. TMG adsorption on Si₁₅H₁₈–(NH₂)₂ and Si₁₅H₂₀=(NH)₂ clusters was modeled, where –NH₂ and =NH surface species served as adsorption sites. The reaction mechanisms in the adsorption and nitridation steps were investigated. The results showed that TMG can adsorb on both surface adsorption sites. In the initial adsorption stage, TMG adsorbs onto =NH- and –NH₂-terminated Si(100) surfaces with activation energies of 1.11 and 2.00 eV, respectively, indicating that the =NH site is more reactive. During subsequent NH3 adsorption, NH₃ adsorbs onto the residual TMG on the =NH- and –NH₂-terminated surfaces with activation energies of approximately 2.00 ± 0.02 eV. The reaction pathways indicate that NH₃ adsorbs via similar mechanisms on both surfaces, resulting in comparable nitridation kinetics. Furthermore, this study suggests that highly reactive NH₂⁻ species generated in the gas phase from ionized NH₃ may help reduce the process temperature in the GaN-ALD process. Full article

Corrosion poses a critical challenge to the durability and performance of metals and alloys, particularly steel, with significant economic, environmental, and safety implications. The corrosion susceptibility of steel is influenced by aggressive chemical species, intrinsic material defects, and environmental factors. Understanding the atomic-scale mechanisms governing corrosion is essential for developing advanced corrosion-resistant materials. Density functional theory (DFT) has become a powerful computational tool for investigating these mechanisms, providing insight into the adsorption, diffusion, and reaction of corrosive species on iron surfaces, the formation and stability of metal oxides, and the influence of defects such as vacancies and grain boundaries in localised corrosion. This review presents a comprehensive analysis of recent DFT-based studies on iron and steel surfaces, emphasising the role of solvation effects and van der Waals corrections in improving model accuracy. It also explores defect-driven corrosion mechanisms and the formation of protective and reactive oxide layers under varying oxygen coverages. By establishing accurate DFT modelling approaches, this review provides up-to-date literature insights that support future integration with machine learning and multiscale modelling techniques, enabling reliable atomic-scale predictions. Full article

Background: Colon cancer is one of the leading causes of cancer-related deaths today. Crucial research continues for the ideal chemotherapy. In this context, natural compounds of plant origin play an important role in the development of new anticancer drugs. Methods: In this study, the effects of Consolida orientalis ethanol extract (flower parts), Smyrnium rotundifolium ethanol extract (aerial parts), and Euphorbia virgata ethanol extract (aerial parts) samples on HT-29 (human colorectal adenocarcinoma cell line) and healthy CCD-18Co (human normal colon fibroblast cell line) were investigated for the first time in the literature by applying 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) test within the scope of in vitro cytotoxicity analysis. Results: As a result of the study, it was observed that all plant extracts were most effective at 72 h. S. rotundifolium ethanol extract (aerial parts) was found to be the most effective on the HT-29 cell line. Both the higher cell viability of C. orientalis in healthy cells applied to it compared to S. rotundifolium and its effectiveness on colon cancer cell lines make C. orientalis more advantageous. Conclusions: When evaluating the efficacy of extracts on cancer cells, the load on healthy cells should be taken into account. Therefore, C. orientalis ethanol extract (flower parts) was found to have the potential to be a chemotherapeutic agent against colon cancer. Chemical reactivities of the dominant components of bioactive components were analyzed via Conceptual Density Functional Theory-based calculations. The power of the interactions with EGFR kinase of these compounds is checked via Molecular Docking Calculations. It was noted that Chlorogenic acid, which is the most reactive bioactive component, has a stronger binding to the mentioned enzyme. Full article

The avian influenza virus, particularly the highly pathogenic H5N1 subtype, represents a significant public health threat due to its interspecies transmission potential and growing resistance to current antiviral therapies. To address this, the identification of novel and effective neuraminidase (NA) inhibitors is critical. In this study, an integrated in silico strategy was employed, beginning with the generation of an energy-optimized pharmacophore model (e-pharmacophore, ADDN) based on the reference inhibitor Zanamivir. A virtual screening of 47,781 natural compounds from the PubChem database was performed, followed by molecular docking validated through an enrichment assay. Promising hits were further evaluated via ADMET predictions, density functional theory (DFT) calculations to assess chemical reactivity, and molecular dynamics (MD) simulations to examine the stability of the ligand–protein complexes. Three lead compounds (C1: CID 102209473, C2: CID 85692821, and C3: CID 45379525) demonstrated strong binding affinity toward NA. Their ADMET profiles predicted favorable bioavailability and low toxicity. The DFT analyses indicated suitable chemical reactivity, particularly for C2 and C3. The MD simulations confirmed the structural stability of all three ligand–NA complexes, supported by robust and complementary intermolecular interactions. In contrast, Zanamivir exhibited limited hydrophobic interactions, compromising its binding stability within the active site. These findings offer a rational foundation for further experimental validation and the development of next-generation NA inhibitors derived from natural sources. Full article

Nickel (Ni) catalysts have numerous applications in the chemical industry, but they are susceptible to sulfurization, with their sulfurized structures and underlying formation mechanisms remaining unclear. Herein, density functional theory (DFT) combined with the particle swarm optimization (PSO) algorithm is employed to investigate the low-energy structures and formation mechanisms of sulfide phases on Ni(111) surfaces, especially under high-sulfur-coverage conditions where traditional DFT calculations fail to reach convergence. Using ($\sqrt{3}\times \sqrt{3}$ ) Ni(111) slab models, we identify a sulfurization limit, finding that each pair of deposited sulfur atoms can sulfurize one layer of three Ni atoms at most (Ni:S = 3:2), with additional sulfur atoms penetrating deeper layers until saturation. Under typical reactive adsorption desulfurization conditions, the ab initio thermodynamics analysis indicates that Ni₃S₂ is the most stable sulfide phase, consistent with sulfur K-edge XANES data. Unsaturated phases, including Ni₃S, Ni₂S, and Ni₉S₅, represent intermediate states towards saturation, potentially explaining the diverse Ni sulfide compositions observed in experiments. Full article

This study employs a plasma-coupled calcium peroxide (CaO₂) system to degrade tetracycline (TC) and remove phosphorus from emergency wastewater in a chemical industry park. The plasma/CaO₂ system achieves optimal performance when the CaO₂ dosage reaches 0.13 g/L. Higher degradation efficiencies of TC were observed at increased discharge voltages, frequencies, and under weakly acidic and weakly alkaline conditions. Variations in discharge voltage and frequency have no significant impact on the phosphorus removal efficiency, but weakly alkaline conditions favor phosphorus removal. The reactive species (·OH, ¹O₂, O₂·⁻) within the plasma/CaO₂ system were identified, and their roles were elucidated using radical scavengers. Subsequently, the degradation process was characterized by measuring changes in total organic carbon (TOC), chemical oxygen demand (COD), and ammonia nitrogen during the reaction, along with three-dimensional fluorescence analysis and ultraviolet-visible spectroscopy (UV-Vis). Eight intermediate products were identified through LC-MS, and two degradation pathways were clarified based on density functional theory. The toxicity analysis of the intermediate products demonstrated that the plasma/CaO₂ system is an efficient, feasible, and environmentally friendly method for the synchronous removal of organic pollutants and phosphorus from emergency wastewater in a chemical industry park. Full article

Phosphorus contamination in water bodies is a major contributor to eutrophication, leading to algal overgrowth, oxygen depletion, and ecological imbalance. Conventional treatment methods, including chemical precipitation and synthetic adsorbents, are often limited by high operational costs, low biodegradability, and secondary pollutant generation. In this study, a cationic starch was synthesized through free radical graft polymerization of 3-methacrylamoylaminopropyl trimethyl ammonium chloride (MAPTAC) onto corn starch. The modified polymer exhibited a high degree of substitution (DS = 1.24), indicating successful functionalization with quaternary ammonium groups. Theoretical calculations using zDensity Functional Theory (DFT) at the B3LYP/6-311+G(d,p) level revealed a decrease in chemical hardness (from 0.10442 eV to 0.04386 eV) and a lower ionization potential (from 0.24911 eV to 0.15611 eV) in the modified starch, indicating enhanced electronic reactivity. HOMO-LUMO analysis and molecular electrostatic potential (MEP) maps confirmed increased electron-accepting capacity and the formation of new electrophilic sites. Experimentally, the cationic starch showed stable zeta potential values averaging +15.3 mV across pH 5.0–10.0, outperforming aluminum sulfate (Alum), which reversed its charge above pH 7.5. In coagulation-flocculation trials, the modified starch achieved 87% total suspended solids (TSS) removal at a low coagulant-to-biomass ratio of 0.0601 (w/w) using Scenedesmus obliquus, and 78% TSS removal in real wastewater at a 1.5:1 ratio. Additionally, it removed 30% of total phosphorus (TP) under environmentally benign conditions, comparable to Alum but with lower chemical input. The integration of computational and experimental approaches demonstrates that MAPTAC-modified starch is an efficient, eco-friendly, and low-cost alternative for nutrient and solids removal in wastewater treatment. Full article

Kapakahines A–G are natural products isolated from the marine sponge Carteriospongia sp., characterized by complex molecular architectures composed of fused rings and diverse functional groups. Preliminary studies have indicated that some of these peptides may exhibit cytotoxic and antitumor activities, which has prompted interest in further exploring their chemical and pharmacokinetic properties. Computational chemistry—particularly Conceptual Density Functional Theory (CDFT)-based Computational Peptidology (CP)—offers a valuable framework for investigating such compounds. In this study, the CDFT-CP approach is applied to analyze the structural and electronic properties of Kapakahines A–G. Alongside the calculation of global and local reactivity descriptors, predicted ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) profiles and pharmacokinetic parameters, including pKa and LogP, are evaluated. The integrated computational analysis provides insights into the stability, reactivity, and potential drug-like behavior of these marine-derived cyclopeptides and contributes to the theoretical groundwork for future studies aimed at optimizing their bioactivity and safety profiles. Full article

The intramolecular Diels–Alder (IMDA) reactions of four substituted deca-1,3,9-trienes and one N-methyleneocta-5,7-dien-1-aminium with different electrophilic/nucleophilic activations have been studied within the Molecular Electron Density Theory (MEDT) and compared to their intermolecular processes. The topological analysis of the electron density and DFT-based reactivity indices reveal that substitution does not modify neither the electronic structure nor the reactivity of the reagents relative to those involved in the intermolecular processes. The analysis of the relative energies establishes that the accelerations found in the polar IMDA reactions follow the same trend as those found in the intermolecular processes. The geometries and the electronic structures of the five transition state structures involved in the IMDA reactions are highly similar to those found in the intermolecular processes. A relative interacting atomic energy (RIAE) analysis of Diels–Alder and IMDA reactions allows for the establishment of the substituent effects on the activation energies. Although the nucleophilic frameworks are destabilized, the electrophilic frameworks are further stabilized, resulting in a reduction in the activation energies. The present MEDT study demonstrates the remarkable electronic and energetic similarity between the intermolecular and intramolecular Diels–Alder reactions. Only the lower, unfavorable activation entropy associated with the latter renders it 10⁴ times faster than the former. Full article

It is difficult to obtain efficient flowability of reactive powder concrete (RPC) mix due to a low water/binder ratio. The improvement of material flowability could be achieved by using the latest generation polycarboxylate superplasticizers (SPs), as well as by changing the mixing procedure. This paper presents two different superplasticizers’ effect on a fresh mix and hardened reactive powder concrete properties. Results of systematic experimental studies (including physicochemical and spectroscopic tests) and molecular modelling suggest that superplasticizer chemical structure plays a key role in shaping the properties of the concrete mix. It has been demonstrated that SP containing more carboxylate salt groups -COO⁻ Me⁺ improves fluidity of the RPC mix and causes its better deaeration. In contrast, hardened concrete exhibits lower porosity and consequently greater strength. On the other hand, a change in ingredients mixing from a three-stage to a four-stage procedure increased the mix flowability and the RPC strength. The chemical structure of SP and the mixing procedure had no significant impact on cement hydration progress. Our results could be useful both from the point of view of the basic science of materials and the applied field of planning of cement composites in construction. Full article

Catalysts with anionic metal centers have recently been proposed to enhance the performance of various chemical processes. Here, we focus on the reactivity of ${\mathrm{Co}\left(\mathrm{CO}\right)}_4^{-}$ for the polymerization of aziridine and carbon monoxide to form polypeptoids, motivated by earlier experimental studies. We used multi-reference and density functional theory methods to investigate possible reaction mechanisms and provide insights into the role of the negatively charged cobalt center. Two different reaction paths were identified. In the first path, ${\mathrm{Co}}^{-}$ acts as a nucleophile, donating an electron pair to the reaction substrate, while in the second path, it performs a single electron transfer to the substrate, initiating radical polymerization. The difference in the activation barriers for the two key steps is small and falls within the accuracy of our calculations. As suggested in the literature, solvent effects can play a primary role in determining the outcomes of such reactions. Future investigations will involve different metals or ligands and will investigate the effects of these two reaction paths on other chemical transformations. Full article

Chemically modified electrodes based on derivatives of 2-thioxothiazolidin-4-one were mentioned as possible solutions for heavy metal (HM) ions heterogeneous recognition. Such ligands form thin films with reversible responses in the ferrocene redox probe with a well-defined symmetrical peak and symmetrical values for the anodic and cathodic currents. Their selectivity in coordinating HM ions was proven. In this paper, a computer-added study was performed using density functional theory (DFT) based on two methods, B3LYP and ωB97XD, to arrive at a better inside of their structure. Properties related to their reactivity concerning experimental electrochemical behaviour and spectral results were calculated using specific molecular descriptors. DFT-calculated HOMO-LUMO energies were found in good linear correlation with experimental redox potential. The accuracy of the calculations was also proven by a good agreement between the energy calculated by the DFT method and the UV-Vis spectra for the studied ligands. Such a computational approach can be used to evaluate the properties of possible new ligands for such electrochemical applications. The strong correlation between DFT-predicted quantum parameters and experimental redox potentials underscores the relevance of these computational approaches in designing selective molecular sensors. The results obtained using the two functionals are in good agreement, although there are also situations and parameters for which the results are not identical. There is a symmetry of the values obtained by the electrochemical and spectral methods with those calculated by DFT. Full article

Research on the multi-field coupling effects in rocks has been ongoing for several decades, encompassing studies on single physical fields as well as two-field (TH, TM, HM) and three-field (THM) couplings. However, the environmental conditions of rock masses in deep resource extraction and underground space development are highly complex. In such settings, rocks are put through thermal-hydrological-mechanical-chemical (THMC) coupling effects under peak temperatures, strong osmotic pressures, extreme stress, and chemically reactive environments. The interaction between these fields is not a simple additive process but rather a dynamic interplay where each field influences the others. This paper provides a comprehensive analysis of fragmentation evolution, deformation mechanics, mechanical constitutive models, and the construction of coupling models under multi-field interactions. Based on rock strength theory, the constitutive models for both multi-field coupling and creep behavior in rocks are developed. The research focus on multi-field coupling varies across industries, reflecting the diverse needs of sectors such as mineral resource extraction, oil and gas production, geothermal energy, water conservancy, hydropower engineering, permafrost engineering, subsurface construction, nuclear waste disposal, and deep energy storage. The coupling of intense stress, fluid flow, temperature, and chemical factors not only triggers interactions between these fields but also alters the physical and mechanical properties of the rocks themselves. Investigating the mechanical behavior of rocks under these conditions is essential for averting accidents and assuring the soundness of engineering projects. Eventually, we discuss vital challenges and future directions in multi-field coupling research, providing valuable insights for engineering applications and addressing allied issues. Full article

Oxide phases such as $\alpha$-Fe₂O₃ (hematite) and $\alpha$-Al₂O₃ (corundum) are highly insoluble in water; however, subcritical crack growth has been observed in humidity nonetheless. Chemically induced bond breaking at the crack tip appears unlikely due to sterically hindered molecular transport. The molecular mechanics of a crack in corundum with a reactive force field reveal minimal lattice trapping, leading to bond breaking before sufficient space opens for water transport. To address this, we model a pre-built blunt crack with space for H₂O molecule adsorption at the tip and show that it reduces fracture toughness by lowering the critical J-integral. Then, we explore stress-enhanced dissolution to understand the mechanism of crack tip blunting in the oxide/water system. Density functional theory combined with metadynamics was employed to describe atomic dissolution from flat hematite and corundum surfaces in pure water. Strain accelerates dissolution, stabilizing intermediate states with broken bonds before full atom detachment, while the free energy profile of unstrained surfaces is almost monotonic. The atomistic calculations provided input for a kinetic model, predicting the shape evolution of a blunt crack tip, which displays three distinct regimes: (i) dissolution primarily away from the tip, (ii) enhanced blunting near but not at the apex, and (iii) sharpening near the apex. The transition between regimes occurs at a low strain, highlighting the critical role of water in the subcritical crack growth of oxide scales, with dissolution as the fundamental microscopic mechanism behind this process. Full article