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Keywords = canopy hyperspectral reflectance

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24 pages, 5841 KB  
Article
Probing Early and Long-Term Drought Responses in Kauri Using Canopy Hyperspectral Imaging
by Mark Jayson B. Felix, Russell Main, Michael S. Watt and Taoho Patuawa
Remote Sens. 2025, 17(23), 3914; https://doi.org/10.3390/rs17233914 - 3 Dec 2025
Viewed by 474
Abstract
Global increases in drought frequency and severity pose growing risks to forest resilience, particularly for long-lived endemic tree species such as kauri (Agathis australis). Building on prior leaf-level work, this study assessed the utility of multitemporal canopy-scale hyperspectral imaging to characterise [...] Read more.
Global increases in drought frequency and severity pose growing risks to forest resilience, particularly for long-lived endemic tree species such as kauri (Agathis australis). Building on prior leaf-level work, this study assessed the utility of multitemporal canopy-scale hyperspectral imaging to characterise water stress in both controlled nursery and field conditions. Two complementary experiments were undertaken: (i) a 10-week controlled-environment experiment comparing drought and control groups, and (ii) a field-based assessment of juvenile kauri trees across multiple time points with contrasting soil volumetric water content. In the controlled-environment experiment, drought-treated seedlings exhibited delayed physiological responses, with reductions in stomatal conductance and assimilation emerging only after three weeks. In contrast, time-series analysis of narrow band hyperspectral indices (NBHIs) revealed detectable stress signatures within one week after drought initiation, with early sensitivity driven by structural and pigment-related indices. As stress progressed, pigment-specific indices became the dominant predictors. These findings were consistent with the field-based experiment. Variation in leaf equivalent water thickness (EWT) was strongly explained by pigment-sensitive indices, including Pigment Specific Simple Ratio Carotenoid (PSSRc) and Carotenoid Reflectance indices (CRI700 and CRI550), which together accounted for ca. 87% of the variance. Structural indices such as the Normalised Difference Vegetation Index (NDVI) also ranked among the top 20 predictors, but had comparatively lower explanatory power (<75%). Overall, the two experiments show that canopy-based hyperspectral imaging provides early, sensitive, and consistent detection of water stress in kauri. The findings highlight a scalable approach for monitoring drought impacts on kauri and offer a foundation for developing operational forest health tools under increasing climate pressure. Full article
(This article belongs to the Collection Feature Papers for Section Environmental Remote Sensing)
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20 pages, 8079 KB  
Article
How Do Spectral Scales and Machine Learning Affect SPAD Monitoring at Different Growth Stages of Winter Wheat?
by Xueqing Zhu, Jun Li, Yali Sheng, Weiqiang Wang, Haoran Wang, Hui Yang, Ying Nian, Jikai Liu and Xinwei Li
Agriculture 2025, 15(23), 2410; https://doi.org/10.3390/agriculture15232410 - 22 Nov 2025
Viewed by 286
Abstract
Chlorophyll serves as a crucial indicator for crop growth monitoring and reflects the health status of crops. Hyperspectral remote sensing technology, leveraging its advantages of repeated observations and high-throughput analysis, provides an effective approach for non-destructive chlorophyll monitoring. However, determining the optimal spectral [...] Read more.
Chlorophyll serves as a crucial indicator for crop growth monitoring and reflects the health status of crops. Hyperspectral remote sensing technology, leveraging its advantages of repeated observations and high-throughput analysis, provides an effective approach for non-destructive chlorophyll monitoring. However, determining the optimal spectral scale remains the primary bottleneck constraining the widespread application of hyperspectral remote sensing in crop chlorophyll estimation: excessively fine spectral scale readily introduces redundant information, leading to dramatically increased data dimensions and reduced computational efficiency; conversely, overly coarse spectral scale risks losing critical spectral features such as absorption peaks and reflection troughs, thereby compromising model accuracy. Therefore, establishing an appropriate spectral scale that effectively preserves spectral feature information while maintaining computational efficiency is crucial for enhancing the accuracy and practicality of chlorophyll remote sensing estimation. To address this, this study proposes a three-dimensional analytical framework integrating “spectral scale—machine learning algorithm—crop growth stage” to systematically solve the scale optimization problem. Ground-truth measurements and hyperspectral data from five growth stages of winter wheat in Fengyang County, Anhui Province, were collected. Spectral bands sensitive to chlorophyll were analyzed, and four modeling methods—Ridge Regression (RR), K-Nearest Neighbors (KNN), Random Forest (RF), and Support Vector Regression (SVR)—were employed to integrate data from different spectral scales with respective bandwidths of 2, 3, 5, 7, 10, 20, and 50 nanometers (nm). The results evaluated the response characteristics of raw band reflectance to chlorophyll values and its impact on machine learning-based chlorophyll estimation across different spectral scales. Results indicate: (1) Canopy spectra significantly correlated with winter wheat chlorophyll primarily reside in the red and red-edge bands; (2) For single-scale analysis, larger spectral scales (10, 20 nm) enhance monitoring accuracy compared to 1 nm high-resolution data, while medium and small scales (5, 7 nm) may degrade accuracy due to redundant noise introduction. (3) Integrating growth stages, spectral scales, and machine learning revealed optimal monitoring accuracy during the jointing and heading stages using 1–5 nm spectral scales combined with the KNN algorithm. For the booting, flowering, and grain filling stages, the highest accuracy was achieved using 20–50 nm spectral scales combined with either the KNN or RF algorithm. The results indicate that high-precision chlorophyll inversion for winter wheat does not rely on a single fixed model or scale, but rather on the dynamic adaptation of the “scale-model-growth stage” triad. The proposed systematic framework not only provides a theoretical basis for chlorophyll monitoring using multi-platform remote sensing data, but also offers methodological support for future crop-sensing sensor design and data processing strategy optimization. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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19 pages, 1792 KB  
Article
Hyperspectral Detection of Single and Combined Effects of Simulated Tree Shading and Alternaria alternata Infection on Sorghum bicolor, from Leaf to UAV-Canopy Scale
by Lorenzo Pippi, Michael Alibani, Nicola Acito, Daniele Antichi, Giovanni Caruso, Marco Fontanelli, Michele Moretti, Cristina Nali, Silvia Pampana, Elisa Pellegrini, Andrea Peruzzi, Samuele Risoli, Gabriele Sileoni, Nicola Silvestri, Lorenzo Gabriele Tramacere and Lorenzo Cotrozzi
Agronomy 2025, 15(11), 2458; https://doi.org/10.3390/agronomy15112458 - 22 Oct 2025
Cited by 1 | Viewed by 539
Abstract
Agroforestry systems offer clear environmental and agronomic advantages, but their effect on plant–biotic stressor interactions remains poorly understood. Specifically, the shade from companion trees can create microclimates favorable to fungal diseases on herbaceous crops. This potential drawback may offset other benefits, highlighting the [...] Read more.
Agroforestry systems offer clear environmental and agronomic advantages, but their effect on plant–biotic stressor interactions remains poorly understood. Specifically, the shade from companion trees can create microclimates favorable to fungal diseases on herbaceous crops. This potential drawback may offset other benefits, highlighting the urgent need for advanced plant health monitoring in these systems. This study assessed the potential of hyperspectral reflectance to detect the single and combined effects of simulated tree shading and infection by the fungal pathogen Alternaria alternata on grain sorghum (Sorghum bicolor L. Moench) under rainfed field conditions. Sorghum was grown either under full light or 50% shading conditions. Half of the plots were artificially inoculated with an A. alternata spore suspension (2 × 108 CFU mL−1), while the others served as controls. Leaf and ground-canopy measurements were acquired with a full range spectroradiometer (VNIR-SWIR, 400–2,400 nm) and UAV imagery covered the VIS-NIR range (400–1,000 nm) before the onset of visible symptoms. Permutational multivariate analysis of variance of leaf and ground-canopy data revealed significant effects of shading (Sh), infection (Aa), and their interaction (p < 0.05), allowing early detection of infection two days before symptom appearance, while UAV data showed only singular significant effects. Partial least squares discriminant analysis accuracy reached 78% at the leaf level, 90% at the ground-canopy level, and 74% (Sh) and 75% (Aa) at the UAV scale. Furthermore, vegetation spectral indices derived from the spectra confirmed greater physiological stress in shaded and infected plants, consistent with disease incidence assessments. Our results establish scale-specific hyperspectral reflectance spectroscopy as a powerful, non-destructive technique for early plant health surveillance in agroforestry. This advanced optical sensing capability is poised to illuminate complex stressor interactions, marking a significant step forward for precision agroforestry management. Full article
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18 pages, 6804 KB  
Article
Three-Dimensional Spectral Index-Driven Nondestructive Quantification of Chlorophyll in Winter Wheat: Cross-Phenology Extrapolation and Independent Validation
by Zhijun Li, Wei Zhang, Zijun Tang, Youzhen Xiang and Fucang Zhang
Agronomy 2025, 15(10), 2376; https://doi.org/10.3390/agronomy15102376 - 11 Oct 2025
Viewed by 495
Abstract
As a staple cereal worldwide, winter wheat plays a pivotal role in food security. Leaf chlorophyll serves as a direct indicator of photosynthetic performance and nitrogen nutrition, making it critical for precision management and yield gains. Consequently, rapid, nondestructive, and high-accuracy remote-sensing retrievals [...] Read more.
As a staple cereal worldwide, winter wheat plays a pivotal role in food security. Leaf chlorophyll serves as a direct indicator of photosynthetic performance and nitrogen nutrition, making it critical for precision management and yield gains. Consequently, rapid, nondestructive, and high-accuracy remote-sensing retrievals are urgently needed to underpin field operations and precision fertilization. In this study, canopy hyperspectral reflectance together with destructive chlorophyll assays were systematically acquired from Yangling field trials conducted during 2018–2020. Three families of spectral indices were devised: classical empirical indices; two-dimensional optimal spectral indices (2D OSI) selected by correlation-matrix screening; and novel three-dimensional optimal spectral indices (3D OSI). The main contribution lies in devising novel 3D OSIs that combine three spectral bands and demonstrating how their fusion with classic two-band indices can improve chlorophyll quantification. Correlation analysis showed that most empirical vegetation indices were significantly associated with chlorophyll (p < 0.05), with the new double difference index (NDDI) giving the strongest relationship (R = 0.637). Within the optimal-index sets, the difference three-dimensional spectral index (DTSI; 680, 807, and 1822 nm) achieved a correlation coefficient of 0.703 (p < 0.05). Among all multi-input fusion schemes, fusing empirical indices with 3D OSI and training with RF delivered the best validation performance (R2 = 0.816, RMSE = 0.307 mg g−1, MRE = 11.472%), and external data further corroborated its feasibility. Altogether, integrating 3D spectral indices with classical vegetation indices and deploying RF enabled accurate, nondestructive estimation of winter wheat chlorophyll, offering a new hyperspectral pathway for monitoring crop physiological status and advancing precision agricultural management and fertilization, can guide in-season fertilization to optimize nitrogen use, thereby advancing precision agriculture. Full article
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25 pages, 2135 KB  
Article
Monitoring Wolfberry (Lycium barbarum L.) Canopy Nitrogen Content with Hyperspectral Reflectance: Integrating Spectral Transformations and Multivariate Regression
by Yongmei Li, Hao Wang, Hongli Zhao, Ligen Zhang and Wenjing Xia
Agronomy 2025, 15(9), 2072; https://doi.org/10.3390/agronomy15092072 - 28 Aug 2025
Viewed by 808
Abstract
Accurate monitoring of canopy nitrogen content in wolfberry (Lycium barbarum L.) is essential for optimizing fertilization management, improving crop yield, and promoting sustainable agriculture. However, the sparse, architecturally complex canopy of this perennial shrub—featuring coexisting branches, leaves, flowers, and fruits across maturity [...] Read more.
Accurate monitoring of canopy nitrogen content in wolfberry (Lycium barbarum L.) is essential for optimizing fertilization management, improving crop yield, and promoting sustainable agriculture. However, the sparse, architecturally complex canopy of this perennial shrub—featuring coexisting branches, leaves, flowers, and fruits across maturity stages—poses significant challenges for canopy spectral-based nitrogen assessment. This study integrates methods across canopy spectral acquisition, transformation, feature spectral selection, and model construction, and specifically explores the potential of hyperspectral remote sensing, integrated with spectral mathematical transformations and machine learning algorithms, for predicting canopy nitrogen content in wolfberry. The overarching goal is to establish a feasible technical framework and predictive model for monitoring canopy nitrogen in wolfberry. In this study, canopy spectral measurements are systematically collected from densely overlapping leaf regions within the east, south, west, and north orientations of the wolfberry canopy. Spectral data undergo mathematical transformation using first-derivative (FD) and continuum-removal (CR) techniques. Optimal spectral variables are identified through correlation analysis combined with Recursive Feature Elimination (RFE). Subsequently, predictive models are constructed using five machine learning algorithms and three linear regression methods. Key results demonstrate that (1) FD and CR transformations enhance the correlation with nitrogen content (max correlation coefficient (r) = −0.577 and 0.522, respectively; p < 0.01), surpassing original spectra (OS, −0.411), while concurrently improving model predictive capability. Validation tests yield maximum R2 values of 0.712 (FD) and 0.521 (CR) versus 0.407 for OS, confirming FD’s superior performance enhancement. (2) Nonlinear machine learning models, by capturing complex canopy-light interactions, outperform linear methods and exhibit superior predictive performance, achieving R2 values ranging from 0.768 to 0.976 in the training set—significantly outperforming linear regression models (R2 = 0.107–0.669). (3) The Random Forest (RF) model trained on FD-processed spectra achieves the highest accuracy, with R2 values of 0.914 (training set) and 0.712 (validation set), along with an RPD of 1.772. This study demonstrates the efficacy of spectral transformations and nonlinear regression methods in enhancing nitrogen content estimation. It establishes the first effective field monitoring strategy and optimal predictive model for canopy nitrogen content in wolfberry. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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20 pages, 3795 KB  
Article
Leaf Area Index Estimation of Grassland Based on UAV-Borne Hyperspectral Data and Multiple Machine Learning Models in Hulun Lake Basin
by Dazhou Wu, Saru Bao, Yi Tong, Yifan Fan, Lu Lu, Songtao Liu, Wenjing Li, Mengyong Xue, Bingshuai Cao, Quan Li, Muha Cha, Qian Zhang and Nan Shan
Remote Sens. 2025, 17(16), 2914; https://doi.org/10.3390/rs17162914 - 21 Aug 2025
Viewed by 1585
Abstract
Leaf area index (LAI) is a crucial parameter reflecting the crown structure of the grassland. Accurately obtaining LAI is of great significance for estimating carbon sinks in grassland ecosystems. However, spectral noise interference and pronounced spatial heterogeneity within vegetation canopies constitute significant impediments [...] Read more.
Leaf area index (LAI) is a crucial parameter reflecting the crown structure of the grassland. Accurately obtaining LAI is of great significance for estimating carbon sinks in grassland ecosystems. However, spectral noise interference and pronounced spatial heterogeneity within vegetation canopies constitute significant impediments to achieving high-precision LAI retrieval. This study used hyperspectral sensor mounted on an unmanned aerial vehicle (UAV) to estimate LAI in a typical grassland, Hulun Lake Basin. Multiple machine learning (ML) models were constructed to reveal a relationship between hyperspectral data and grassland LAI using two input datasets, namely spectral transformations and vegetation indices (VIs), while SHAP (SHapley Additive ExPlanation) interpretability analysis was further employed to identify high-contribution features in the ML models. The analysis revealed that grassland LAI has good correlations with the original spectrum at 550 nm and 750 nm–1000 nm, first and second derivatives at 506 nm–574 nm, 649 nm–784 nm, and vegetation indices including the triangular vegetation index (TVI), enhanced vegetation index 2 (EVI2), and soil-adjusted vegetation index (SAVI). In the models using spectral transformations and VIs, the random forest (RF) models outperformed other models (testing R2 = 0.89/0.88, RMSE = 0.20/0.21, and RRMSE = 27.34%/28.98%). The prediction error of the random forest model exhibited a positive correlation with measured LAI magnitude but demonstrated an inverse relationship with quadrat-level species richness, quantified by Margalef’s richness index (MRI). We also found that at the quadrat level, the spectral response curve pattern is influenced by attributes within the quadrat, like dominant species and vegetation cover, and that LAI has positive relationship with quadrat vegetation cover. The LAI inversion results in this study were also compared to main LAI products, showing a good correlation (r = 0.71). This study successfully established a high-fidelity inversion framework for hyperspectral-derived LAI estimation in mid-to-high latitude grasslands of the Hulun Lake Basin, supporting the spatial refinement of continental-scale carbon sink models at a regional scale. Full article
(This article belongs to the Section Ecological Remote Sensing)
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25 pages, 5776 KB  
Article
Early Detection of Herbicide-Induced Tree Stress Using UAV-Based Multispectral and Hyperspectral Imagery
by Russell Main, Mark Jayson B. Felix, Michael S. Watt and Robin J. L. Hartley
Forests 2025, 16(8), 1240; https://doi.org/10.3390/f16081240 - 28 Jul 2025
Cited by 1 | Viewed by 1197
Abstract
There is growing interest in the use of herbicide for the silvicultural practice of tree thinning (i.e., chemical thinning or e-thinning) in New Zealand. Potential benefits of this approach include improved stability of the standing crop in high winds, and safer and lower-cost [...] Read more.
There is growing interest in the use of herbicide for the silvicultural practice of tree thinning (i.e., chemical thinning or e-thinning) in New Zealand. Potential benefits of this approach include improved stability of the standing crop in high winds, and safer and lower-cost operations, particularly in steep or remote terrain. As uptake grows, tools for monitoring treatment effectiveness, particularly during the early stages of stress, will become increasingly important. This study evaluated the use of UAV-based multispectral and hyperspectral imagery to detect early herbicide-induced stress in a nine-year-old radiata pine (Pinus radiata D. Don) plantation, based on temporal changes in crown spectral signatures following treatment with metsulfuron-methyl. A staggered-treatment design was used, in which herbicide was applied to a subset of trees in six blocks over several weeks. This staggered design allowed a single UAV acquisition to capture imagery of trees at varying stages of herbicide response, with treated trees ranging from 13 to 47 days after treatment (DAT). Visual canopy assessments were carried out to validate the onset of visible symptoms. Spectral changes either preceded or coincided with the development of significant visible canopy symptoms, which started at 25 DAT. Classification models developed using narrow band hyperspectral indices (NBHI) allowed robust discrimination of treated and non-treated trees as early as 13 DAT (F1 score = 0.73), with stronger results observed at 18 DAT (F1 score = 0.78). Models that used multispectral indices were able to classify treatments with a similar accuracy from 18 DAT (F1 score = 0.78). Across both sensors, pigment-sensitive indices, particularly variants of the Photochemical Reflectance Index, consistently featured among the top predictors at all time points. These findings address a key knowledge gap by demonstrating practical, remote sensing-based solutions for monitoring and characterising herbicide-induced stress in field-grown radiata pine. The 13-to-18 DAT early detection window provides an operational baseline and a target for future research seeking to refine UAV-based detection of chemical thinning. Full article
(This article belongs to the Section Forest Health)
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17 pages, 11610 KB  
Article
Exploring the Impact of Species Participation Levels on the Performance of Dominant Plant Identification Models in the Sericite–Artemisia Desert Grassland by Using Deep Learning
by Wenhao Liu, Guili Jin, Wanqiang Han, Mengtian Chen, Wenxiong Li, Chao Li and Wenlin Du
Agriculture 2025, 15(14), 1547; https://doi.org/10.3390/agriculture15141547 - 18 Jul 2025
Viewed by 583
Abstract
Accurate plant species identification in desert grasslands using hyperspectral data is a critical prerequisite for large-scale, high-precision grassland monitoring and management. However, due to prolonged overgrazing and the inherent ecological vulnerability of the environment, sericite–Artemisia desert grassland has experienced significant ecological degradation. [...] Read more.
Accurate plant species identification in desert grasslands using hyperspectral data is a critical prerequisite for large-scale, high-precision grassland monitoring and management. However, due to prolonged overgrazing and the inherent ecological vulnerability of the environment, sericite–Artemisia desert grassland has experienced significant ecological degradation. Therefore, in this study, we obtained spectral images of the grassland in April 2022 using a Soc710 VP imaging spectrometer (Surface Optics Corporation, San Diego, CA, USA), which were classified into three levels (low, medium, and high) based on the level of participation of Seriphidium transiliense (Poljakov) Poljakov and Ceratocarpus arenarius L. in the community. The optimal index factor (OIF) was employed to synthesize feature band images, which were subsequently used as input for the DeepLabv3p, PSPNet, and UNet deep learning models in order to assess the influence of species participation on classification accuracy. The results indicated that species participation significantly impacted spectral information extraction and model classification performance. Higher participation enhanced the scattering of reflectivity in the canopy structure of S. transiliense, while the light saturation effect of C. arenarius was induced by its short stature. Band combinations—such as Blue, Red Edge, and NIR (BREN) and Red, Red Edge, and NIR (RREN)—exhibited strong capabilities in capturing structural vegetation information. The identification model performances were optimal, with a high level of S. transiliense participation and with DeepLabv3p, PSPNet, and UNet achieving an overall accuracy (OA) of 97.86%, 96.51%, and 98.20%. Among the tested models, UNet exhibited the highest classification accuracy and robustness with small sample datasets, effectively differentiating between S. transiliense, C. arenarius, and bare ground. However, when C. arenarius was the primary target species, the model’s performance declined as its participation levels increased, exhibiting significant omission errors for S. transiliense, whose producer’s accuracy (PA) decreased by 45.91%. The findings of this study provide effective technical means and theoretical support for the identification of plant species and ecological monitoring in sericite–Artemisia desert grasslands. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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24 pages, 18914 KB  
Article
Canopy Chlorophyll Content Inversion of Mountainous Heterogeneous Grasslands Based on the Synergy of Ground Hyperspectral and Sentinel-2 Data: A New Vegetation Index Approach
by Yi Zheng, Yao Wang, Tayir Aziz, Ali Mamtimin, Yang Li and Yan Liu
Remote Sens. 2025, 17(13), 2149; https://doi.org/10.3390/rs17132149 - 23 Jun 2025
Cited by 2 | Viewed by 1094
Abstract
Canopy chlorophyll content (CCC) is a key indicator for assessing the carbon sequestration capacity and material cycling efficiency of ecosystems, and its accurate retrieval holds significant importance for analyzing ecosystem functioning. Although numerous destructive and remote sensing methods have been developed to estimate [...] Read more.
Canopy chlorophyll content (CCC) is a key indicator for assessing the carbon sequestration capacity and material cycling efficiency of ecosystems, and its accurate retrieval holds significant importance for analyzing ecosystem functioning. Although numerous destructive and remote sensing methods have been developed to estimate CCC, the accurate estimation of CCC remains a significant challenge in mountainous regions with complex terrain and heterogeneous vegetation types. Through the synergistic analysis of ground hyperspectral and Sentinel-2 data, this study employed Pearson correlation analysis and spectral resampling techniques to identify Sentinel-2 blue band B1 (443 nm) and red band B4 (665 nm) as chlorophyll-sensitive bands through spectral matching with the hyperspectral reflectance of typical grassland vegetation. Based on this, we developed a new four-band vegetation index (VI), the Dual Red-edge and Coastal Aerosol Vegetation Index (DRECAVI), for estimating the CCC of heterogeneous grasslands in the middle section of the Tianshan Mountains. DRECAVI incorporates red-edge anti-saturation modules (bands B4 and B7) and aerosol correction modules (bands B1 and B8). In order to test the performance of the new index, we compared it with eight commonly used indices and a hybrid model, the Sentinel-2 Biophysical Processor (S2BP). The results indicated the following: (1) DRECAVI demonstrated the highest accuracy in CCC retrieval for mountainous vegetation (R2 = 0.74, RMSE = 16.79, MAE = 12.50) compared to other VIs and hybrid methods, effectively mitigating saturation effects in high biomass areas and capturing a weak bimodal distribution pattern of CCC in the montane meadow. (2) The blue band B1 enhances atmospheric correction robustness by suppressing aerosol scattering, and the red-edge band B7 overcomes the sensitivity limitations of conventional red-edge indices (such as NDVI705, CIred-edge, and NDRE), demonstrating the potential application of the synergy mechanism between the blue band and the red-edge band. (3) Although the S2BP achieved high accuracy (R2 = 0.73, RMSE = 19.83, MAE = 14.71) without saturation effects and detected a bimodal distribution of CCC in the montane meadow of the study area, its algorithmic complexity hindered large-scale operational applications. In contrast, DRECAVI maintained similar precision while reducing algorithmic complexity, making it more suitable for regional-scale grassland dynamic monitoring. This study confirms that the synergistic use of multi-source data effectively overcomes the limitations of the spectral–spatial resolution of a single data source, providing a novel methodology for the precision monitoring of mountain ecosystems. Full article
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17 pages, 6026 KB  
Article
Estimation of Crude Protein Content in Revegetated Alpine Grassland Using Hyperspectral Data
by Yanfu Bai, Shijie Zhou, Jingjing Wu, Haijun Zeng, Bingyu Luo, Mei Huang, Linyan Qi, Wenyan Li, Mani Shrestha, Abraham A. Degen and Zhanhuan Shang
Remote Sens. 2025, 17(13), 2114; https://doi.org/10.3390/rs17132114 - 20 Jun 2025
Cited by 1 | Viewed by 716
Abstract
Remote sensing plays an important role in understanding the degradation and restoration processes of alpine grasslands. However, the extreme climatic conditions of the region pose difficulties in collecting field spectral data on which remote sensing is based. Thus, in-depth knowledge of the spectral [...] Read more.
Remote sensing plays an important role in understanding the degradation and restoration processes of alpine grasslands. However, the extreme climatic conditions of the region pose difficulties in collecting field spectral data on which remote sensing is based. Thus, in-depth knowledge of the spectral characteristics of alpine grasslands and an accurate assessment of their restoration status are still lacking. In this study, we collected the canopy hyperspectral data of plant communities in the growing season from severely degraded grasslands and actively restored grasslands of different ages in 13 counties of the “Three-River Headwaters Region” and determined the absorption characteristics in the red-light region as well as the trends of red-light parameters. We generated a model for estimating the crude protein content of plant communities in different grasslands based on the screened spectral characteristic covariates. Our results revealed that (1) the raw reflectance parameters of the near-infrared band spectra can distinguish alpine Kobresia meadow from extremely degraded and actively restored grasslands; (2) the wavelength value red-edge position (REP), corresponding to the highest point of the first derivative (FD) spectral reflectance (680–750 nm), can identify the extremely degraded grassland invaded by Artemisia frigida; and (3) the red valley reflectance (Rrw) parameter of the continuum removal (CR) spectral curve (550–750 nm) can discriminate among actively restored grasslands of different ages. In comparison with the Kobresia meadow, the predictive model for the actively restored grassland was more accurate, reaching an accuracy of over 60%. In conclusion, the predictive modeling of forage crude protein content for actively restored grasslands is beneficial for grassland management and sustainable development policies. Full article
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16 pages, 3461 KB  
Article
Investigating the Influence of the Weed Layer on Crop Canopy Reflectance and LAI Inversion Using Simulations and Measurements in a Sugarcane Field
by Longxia Qiu, Xiangqi Ke, Xiyue Sun, Yanzi Lu, Shengwei Shi and Weiwei Liu
Remote Sens. 2025, 17(12), 2014; https://doi.org/10.3390/rs17122014 - 11 Jun 2025
Viewed by 694
Abstract
Recent research in agricultural remote sensing mainly focuses on how soil background affects canopy reflectance and the inversion of LAI, while often overlooking the influence of the weed layer. The coexistence of crop and weed layers forms two-layered vegetation canopies in tall crops [...] Read more.
Recent research in agricultural remote sensing mainly focuses on how soil background affects canopy reflectance and the inversion of LAI, while often overlooking the influence of the weed layer. The coexistence of crop and weed layers forms two-layered vegetation canopies in tall crops such as sugarcane and maize. Although radiative transfer models can simulate the weed layer’s influence on canopy reflectance and LAI inversion, few experimental investigations use in situ measurement data to verify these effects. Here, we propose a practical background modification scheme in which black material with near-zero reflectance covers the weed layer and alters the background spectrum of crop canopies. We conduct an experimental investigation in a sugarcane field with different background properties (i.e., bare soil and a weed layer). Tower-based and UAV-based hyperspectral measurements examine the spectral differences in sugarcane canopies with and without the black covering. We then use LAI measurements to evaluate the weed layer’s impact on LAI inversion from UAV-based hyperspectral data through a hybrid inversion method. We find that the weed layer significantly affects the canopy reflectance spectrum, changing it by 13.58% and 42.53% in the near-infrared region for tower-based and UAV-based measurements, respectively. Furthermore, the weed layer substantially interferes with LAI inversion of sugarcane canopies, causing significant overestimation. Estimated LAIs of sugarcane canopies with a soil background generally align well with measured values (root mean square error (RMSE) = 0.69 m2/m2), whereas those with a weed background are considerably overestimated (RMSE = 2.07 m2/m2). We suggest that this practical background modification scheme quantifies the weed layer’s influence on crop canopy reflectance from a measurement perspective and that the weed layer should be considered during the inversion of crop LAI. Full article
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25 pages, 5871 KB  
Article
Estimating Wheat Traits Using Artificial Neural Network-Based Radiative Transfer Model Inversion
by Lukas J. Koppensteiner, Hans-Peter Kaul, Sebastian Raubitzek, Philipp Weihs, Pia Euteneuer, Jaroslav Bernas, Gerhard Moitzi, Thomas Neubauer, Agnieszka Klimek-Kopyra, Norbert Barta and Reinhard W. Neugschwandtner
Remote Sens. 2025, 17(11), 1904; https://doi.org/10.3390/rs17111904 - 30 May 2025
Cited by 1 | Viewed by 826
Abstract
Estimating wheat traits based on spectral reflectance measurements and machine learning remains challenging due to the large datasets required for model training and testing. To overcome this limitation, a simulated dataset was generated using the radiative transfer model (RTM) PROSAIL and inverted based [...] Read more.
Estimating wheat traits based on spectral reflectance measurements and machine learning remains challenging due to the large datasets required for model training and testing. To overcome this limitation, a simulated dataset was generated using the radiative transfer model (RTM) PROSAIL and inverted based on an artificial neural network (ANN). Field experiments were conducted in Eastern Austria to measure spectral reflectance and destructively sample plants to measure the wheat traits plant area index (PAI), nitrogen yield (NY), canopy water content (CWC), and above-ground dry matter (AGDM). Four ANN-based RTM inversion models were setup, which varied in their spectral resolution, hyperspectral or multispectral, and the inclusion or exclusion of background soil spectra correction. The models were also compared to a simple vegetation index approach using Normalized Difference Vegetation Index (NDVI) and Normalized Difference Red-Edge (NDRE). The RTM inversion model with hyperspectral input data and background soil spectra correction was the best among all tested models for estimating wheat traits during the vegetative developmental stages (PAI: R2 = 0.930, RRMSE = 17.9%; NY: R2 = 0.908, RRMSE = 14.4%; CWC: R2 = 0.967, RRMSE = 17.0%) as well as throughout the whole growing season (PAI: R2 = 0.845, RRMSE = 27.7%; CWC: R2 = 0.884, RRMSE = 20.0%; AGDM: R2 = 0.960, RRMSE = 13.7%). Many models presented in this study provided suitable estimations of the relevant wheat traits PAI, NY, CWC, and AGDM for application in agronomy, breeding, and crop sciences in general. Full article
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18 pages, 3607 KB  
Article
Research on Monitoring Nitrogen Content of Soybean Based on Hyperspectral Imagery
by Yakun Zhang, Mengxin Guan, Libo Wang, Xiahua Cui, Yafei Wang, Peng Li, Shaukat Ali and Fu Zhang
Agronomy 2025, 15(5), 1240; https://doi.org/10.3390/agronomy15051240 - 20 May 2025
Viewed by 1118
Abstract
In order to analyze the relationship between hyperspectral image and soybean canopy nitrogen content in the field, and to establish a prediction model for soybean canopy nitrogen content with few parameters and a simple structure, hyperspectral image data and corresponding nitrogen content data [...] Read more.
In order to analyze the relationship between hyperspectral image and soybean canopy nitrogen content in the field, and to establish a prediction model for soybean canopy nitrogen content with few parameters and a simple structure, hyperspectral image data and corresponding nitrogen content data of soybean canopy at different growth periods under different fertilization treatments were acquired. Three spectral characteristic variables selection methods, including correlation coefficient analysis, stepwise regression, and spectral index analysis, were used to determine the spectral characteristic variables that are closely related to the soybean canopy nitrogen content. The predictive models for soybean canopy nitrogen content based on spectral characteristic variables were established using a multiple linear regression algorithm. On this basis, the established prediction models for soybean canopy nitrogen content were compared and analyzed, and the optimal prediction model for soybean canopy nitrogen content was determined. To verify the applicability of prediction models for soybean canopy nitrogen content, a spatial distribution map of soybean canopy nitrogen content at the regional scale was drawn based on unmanned aerial vehicle (UAV) hyperspectral imaging data at the flowering and seed filling stages of soybean in the experimental area, and the spatial distribution of soybean nitrogen content was statistically analyzed. The results show the following: (1) Soybean canopy spectral reflectance was highly significantly negatively correlated with soybean canopy nitrogen content in the range of 450–729 nm, and highly significantly positively correlated in the range of 756–774 nm, with the largest positive correlation coefficient of 0.2296 at 765 nm and the largest absolute value of negative correlation coefficient of −0.8908 at 630 nm. (2) The predictive model for soybean canopy nitrogen content based on three optimal spectral indices, NDSI(R552,R555), RSI(R537,R573), and DSI(R540,R555), was optimal, with R2 of 0.9063 and 0.91566 and RMSE of 3.3229 and 3.2219 for the calibration and prediction set, respectively. (3) Based on the established optimal prediction model for soybean canopy nitrogen content combined with the UAV hyperspectral image data, spatial distribution maps of soybean nitrogen content at the flowering and seed filling stages were generated, and the R2 between soybean nitrogen content in the spatial distribution map and the ground measured value was 0.93906, the RMSE was 3.6476, and the average relative error was 9.5676%, which indicates that the model had higher prediction accuracy and applicability. (4) The overall results show that the optimal prediction model for soybean canopy nitrogen content established based on hyperspectral imaging data has the characteristics of few parameters, a simple structure, and strong applicability, which provides a new method for realizing rapid, dynamic, and non-destructive monitoring of soybean nutritional status on the regional scale and provides a decision-making basis for precision fertilization management during soybean growth. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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23 pages, 10385 KB  
Article
Combined Use of Spectral and Structural Features for Improved Early Detection of Pine Shoot Beetle Attacks in Yunnan Pines
by Yujie Liu, Youqing Luo, Run Yu, Lili Ren, Qi Jiang, Shaoshun He, Xinqiang Chen and Guangzhao Yang
Remote Sens. 2025, 17(7), 1109; https://doi.org/10.3390/rs17071109 - 21 Mar 2025
Cited by 3 | Viewed by 1042
Abstract
The long-lasting outbreak of the pine shoot beetle (PSB, Tomicus spp.) threatens forest ecological security. Effective monitoring is urgently needed for the Integrated Pest Management (IPM) of this pest. UAV-based hyperspectral remote sensing (HRS) offers opportunities for the early and accurate detection of [...] Read more.
The long-lasting outbreak of the pine shoot beetle (PSB, Tomicus spp.) threatens forest ecological security. Effective monitoring is urgently needed for the Integrated Pest Management (IPM) of this pest. UAV-based hyperspectral remote sensing (HRS) offers opportunities for the early and accurate detection of PSB attacks. However, the insufficient exploration of spectral and structural information from early-attacked crowns and the lack of suitable detection models limit UAV applications. This study developed a UAV-based framework for detecting early-stage PSB attacks by integrating hyperspectral images (HSIs), LiDAR point clouds, and structure from motion (SfM) photogrammetry data. Individual tree segmentation algorithms were utilized to extract both spectral and structural variables of damaged tree crowns. Random forest (RF) was employed to determine the optimal detection model as well as to clarify the contributions of the candidate variables. The results are as follows: (1) Point cloud segmentation using the Canopy Height Model (CHM) yielded the highest crown segmentation accuracy (F-score: 87.80%). (2) Near-infrared reflectance exhibited the greatest decrease for early-attacked crowns, while the structural variable intensity percentile (int_P50-int_P95) showed significant differences (p < 0.05). (3) In the RF model, spectral variables were predominant, with LiDAR structural variables serving as a supplement. The anthocyanin reflectance index and int_kurtosis were identified as the best indicators for early detection. (4) Combining HSI with LiDAR data obtained the best RF model accuracy (classification accuracy: 87.31%; Kappa: 0.8275; SDR estimation accuracy: R2 = 0.8485; RMSEcv = 3.728%). RF integrating HSI and SfM data exhibited similar performance. In conclusion, this study identified optimal spectral and structural variables for UAV monitoring and improved HRS model accuracy and thereby provided technical support for the IPM of PSB outbreaks. Full article
(This article belongs to the Section Forest Remote Sensing)
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21 pages, 4753 KB  
Article
Evaluation of Scale Effects on UAV-Based Hyperspectral Imaging for Remote Sensing of Vegetation
by Tie Wang, Tingyu Guan, Feng Qiu, Leizhen Liu, Xiaokang Zhang, Hongda Zeng and Qian Zhang
Remote Sens. 2025, 17(6), 1080; https://doi.org/10.3390/rs17061080 - 19 Mar 2025
Cited by 4 | Viewed by 1824
Abstract
With the rapid advancement of unmanned aerial vehicles (UAVs) in recent years, UAV-based remote sensing has emerged as a highly efficient and practical tool for environmental monitoring. In vegetation remote sensing, UAVs equipped with hyperspectral sensors can capture detailed spectral information, enabling precise [...] Read more.
With the rapid advancement of unmanned aerial vehicles (UAVs) in recent years, UAV-based remote sensing has emerged as a highly efficient and practical tool for environmental monitoring. In vegetation remote sensing, UAVs equipped with hyperspectral sensors can capture detailed spectral information, enabling precise monitoring of plant health and the retrieval of physiological and biochemical parameters. A critical aspect of UAV-based vegetation remote sensing is the accurate acquisition of canopy reflectance. However, due to the mobility of UAVs and the variation in flight altitude, the data are susceptible to scale effects, where changes in spatial resolution can significantly impact the canopy reflectance. This study investigates the spatial scale issue of UAV hyperspectral imaging, focusing on how varying flight altitudes influence atmospheric correction, vegetation viewer geometry, and canopy heterogeneity. Using hyperspectral images captured at different flight altitudes at a Chinese fir forest stand, we propose two atmospheric correction methods: one based on a uniform grey reference panel at the same altitude and another based on altitude-specific grey reference panels. The reflectance spectra and vegetation indices, including NDVI, EVI, PRI, and CIRE, were computed and analyzed across different altitudes. The results show significant variations in vegetation indices at lower altitudes, with NDVI and CIRE demonstrating the largest changes between 50 m and 100 m, due to the heterogeneous forest canopy structure and near-infrared scattering. For instance, NDVI increased by 18% from 50 m to 75 m and stabilized after 100 m, while the standard deviation decreased by 32% from 50 m to 250 m, indicating reduced heterogeneity effects. Similarly, PRI exhibited notable increases at lower altitudes, attributed to changes in viewer geometry, canopy shadowing and soil background proportions, stabilizing above 100 m. Above 100 m, the impact of canopy heterogeneity diminished, and variations in vegetation indices became minimal (<3%), although viewer geometry effects persisted. These findings emphasize that conducting UAV hyperspectral observations at altitudes above at least 100 m minimizes scale effects, ensuring more consistent and reliable data for vegetation monitoring. The study highlights the importance of standardized atmospheric correction protocols and optimal altitude selection to improve the accuracy and comparability of UAV-based hyperspectral data, contributing to advancements in vegetation remote sensing and carbon estimation. Full article
(This article belongs to the Section Forest Remote Sensing)
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