Search Results (395)

Breeding programs often overlook the use of root traits. Therefore, we investigated the relevance of sorghum root traits in explaining its adaptation to combined drought and heat stress (CDHS). Six (i.e., three pre-release lines + three checks) sorghum genotypes were established at two low-altitude (i.e., <600 masl) locations with a long-term history of averagely very high temperatures in the beginning of the summer season, under two management (i.e., CDHS and well-watered (WW)) regimes. At each location, the genotypes were laid out in the field using a randomized complete block design (RCBD) replicated two times. Root trait data, namely root diameter (RD), number of roots (NR), number of root tips (NRT), total root length (TRL), root depth (RDP), root width (RW), width–depth ratio (WDR), root network area (RNA), root solidity (RS), lower root area (LRA), root perimeter (RP), root volume (RV), surface area (SA), root holes (RH) and root angle (RA) were gathered using the RhizoVision Explorer software during the pre- and post-flowering stage of growth. RSA traits differentially showed significant (p < 0.05) correlations with grain yield (GY) at pre- and post-flowering growth stages and under CDHS and WW conditions also revealing genotypic variation estimates exceeding 50% for all the traits. Regression models varied between pre-flowering (p = 0.013, R² = 47.15%, R² Predicted = 29.32%) and post-flowering (p = 0.000, R² = 85.64%, R² Predicted = 73.30%) growth stages, indicating post-flowering as the optimal stage to relate root traits to yield performance. RD contributed most to the regression model at post-flowering, explaining 51.79% of the 85.64% total variation. The Smith–Hazel index identified ICSV111IN and ASAREACA12-3-1 as superior pre-release lines, suitable for commercialization as new varieties. The study demonstrated that root traits (in particular, RD, RW, and RP) are linked to crop performance under CDHS conditions and should be incorporated in breeding programs. This approach may accelerate genetic gains not only in sorghum breeding programs, but for other crops, while offering a nature-based breeding strategy for stress adaptation in crops. Full article

During a prolonged domestication and environmental selection, Brassica rapa has formed diverse morphological types during a cultivation process of up to 8000 years, such as root-type turnips (Brassica rapa var. rapa), leaf-type Chinese cabbage (Brassica rapa var. pekinensis), oil-type rapeseed (Brassica rapa L.), and other rich types. China is one of the origins of Brassica rapa L., which is spread all over the east, west, south, and north of China. Studying its origin and evolution holds significant importance for unraveling the cultivation history of Chinese oilseed crops, intraspecific evolutionary relationships, and the utilization value of genetic resources. This article summarizes the cultivation history, evolution, classification research progress, and germplasm resource diversity of Brassica rapa var. oleifera in China. Combining karyotype analysis, genomic information, and wild relatives of Brassica rapa var. oleifera discovered on the Qinghai–Tibet Plateau, it is proposed that Brassica rapa var. oleifera has the characteristic of polycentric origin, and Gansu Province in China is one of the earliest regions for its cultivation. Brassica rapa var. oleifera, originating from the Mediterranean region, was diffused to the East Asian continent through two independent transmission paths (one via the Turkish Plateau and the other via Central Asia and Siberia). Analyzing the genetic diversity characteristics and evolutionary trajectories of these two transmission paths lays a foundation for clarifying the origin and evolutionary process of Brassica rapa var. oleifera and accelerating the breeding of Brassica rapa var. oleifera in China. Despite existing research on the origin of Brassica rapa L., the domestication process of this species remains unresolved. Future studies will employ whole-genome resequencing to address this fundamental question. Full article

The likely increase in the frequency and severity of droughts with climate warming will pose an enormous challenge for the conservation of forest biodiversity. Documenting the response of species to recent droughts can inform future conservation actions. Mammals that breed and mature slowly may be especially vulnerable to drought-induced disruption to breeding. The yellow-bellied glider (Petaurus australis, Shaw) is a threatened low-density, arboreal marsupial of eastern Australia. Following a severe drought in 2019, one population had declined by 48% by 2021. The present study investigated whether this population had recovered 3–4 years (2022 and 2023) after that drought. Audio surveys of this highly vocal species were conducted at 42 sites, sampling > 1000 h per year, and producing recordings of 2038–2856 call sequences. The probability of occupancy varied little across the two survey years (0.92–0.97). Local abundance in 2023 had returned to pre-drought levels (45% of occupied sites had ≥3 individuals compared to 6% in 2021). These findings show a recovery from a drought-induced decline required at least 3 years, in keeping with the slow life history traits of this species. This study highlights the importance of considering a species’ life history strategy when evaluating its sensitivity to drought. Full article

Research on structural variations in the field of crop genetics has expanded with the rapid development of genome sequencing technologies. As an important aspect of genomic variations, structural variations have a profound impact on the genetic characteristics of crops and significantly affect their key agronomic traits, such as yield, quality, and disease and stress resistance—by changing the gene arrangement order, copy number, and the positions of regulatory elements. Compared with single-nucleotide polymorphisms, structural variations present a diverse range of types, including deletions, duplications, inversions, and translocations, and their impacts are more extensive and profound. However, research on structural variations in crops still faces many challenges, for example those relating to different ploidy levels, genome repetitiveness, and their associations with phenotypes. Nevertheless, breakthroughs in long-read sequencing technologies and the integration of multi-omics data offer hope for solving these problems. A deep understanding of the impact of structural variations on crops is of great significance for accurately analyzing the evolutionary history of crops and guiding modern crop breeding, and is expected to provide strong support for global food security and the sustainable development of agriculture. Full article

Aquaporins in rice (Oryza sativa L.) represent a pivotal class of transmembrane channel proteins that mediate the bidirectional transport of water and small solutes, which have critical functions in cellular osmoregulation and ion homeostasis maintenance. Their evolutionary diversity and functional plasticity constitute fundamental mechanisms underlying the adaptive responses to diversified environmental challenges. This review systematically summarizes rice AQPs’ evolutionary origins, structural characteristics, and spatiotemporal expression patterns under both physiological and stress conditions, highlighting the high conservation of their key functional domains across evolution and their environment-driven functional diversification. The molecular mechanisms governing AQPs in water utilization, nutrient uptake, and stress responses are unraveled. Furthermore, the potential of precision gene editing and multi-omics integration is discussed to decipher the intricate relationships between AQP evolutionary history, environmental adaptability, and functional specialization, thereby providing a theoretical basis for advancing crop stress resistance and high-quality breeding. Full article

This study is based on the whole gene resequencing data of 162 individuals from 16 chicken breeds. We calculated the historical effective population size (Ne), differentiation time and genetic hybridization degree of the population to understand its historical dynamics, in order to provide a theoretical basis for the scientific protection and utilization of the germplasm resources of Baicheng Oil Chicken (BCY). The main results are as follows: using SMC++ and fastsimcoal2 software, respectively, we estimated Ne of BCY at 46,066 in the past and inferred a divergence time of 428–548 years ago. D-statistical analysis revealed a ~7% genetic introgression from White Leghorn chicken (LH) to BCY. Notably, infiltration genes such as CTNNAL1 (potentially influencing egg production) and RARX (possibly associated with fat deposition) were identified. These findings provide insights into BCY’s demographic history and support its genetic conservation and utilization. Full article

Many life history traits show predictable patterns at broad biogeographical scales, yet much less is known about how behavioural traits vary across such gradients. In this study, I investigated global variation in foraging group size within a large, cosmopolitan avian family—the pigeons—and assessed the roles of climate and predation in shaping these patterns. I compiled data from the literature for species occurring across a range of latitudes, altitudes, and habitats (islands v. continents) and analyzed the data within a phylogenetic framework that accounted for both biogeographical and ecological drivers of group size. Foraging group size increased with latitude among continental species but did not follow these trends on islands, where groups were generally smaller. Group size also increased at higher elevations. Among the climatic variables examined, annual temperature variation emerged as the strongest latitudinal predictor: greater temperature variability was associated with larger group sizes in continental species, but not in island species. The number of predators within a species’ breeding range showed no significant relationship with group size. These findings suggest that climatic variability, rather than number of predators, is a key driver of foraging group size in pigeons at the biogeographical scale. Full article

A five-month-old female mixed-breed dog presented with a two-week history of polyuria, polydipsia, and vomiting. Clinical examination revealed poor body condition, growth retardation, pale oral mucous membranes, weak pulse, and prolonged capillary refill time. Laboratory findings included neutrophilic leukocytosis with a regenerative left shift, fasting hyperglycemia, elevated fructosamine, glycated hemoglobin, and β-hydroxybutyrate concentrations, while the acid–base balance remained normal. Canine-specific pancreatic lipase and trypsin-like immunoreactivity concentrations ruled out an underlying pancreatitis or exocrine pancreatic insufficiency, respectively. Urinalysis showed glycosuria and ketonuria. Supportive care included antibiotics and regular insulin administration. Abdominal ultrasonography identified a pancreatic cavity with a thick wall and mixed echogenic fluid. Ultrasound-guided drainage was performed without complications. Cytology confirmed a pancreatic abscess with pyogranulomatous inflammation, though the culture results were negative. The dog was discharged with intermediate-acting lente insulin. Follow-up ultrasonographic evaluations at 7, 14, and 21 days and 5 months post-drainage showed no recurrence. The diabetes remained well-controlled one year post-discharge. This case report describes the successful management of a dog with juvenile diabetes mellitus complicated by a pancreatic abscess, highlighting the effectiveness of percutaneous ultrasound-guided drainage combined with medical therapy. Full article

The conservation of local breeds plays a strategic role in maintaining genetic variability, ensuring adaptive responses to environmental challenges, and preserving the cultural and socioeconomic structures of traditional communities. In this context, this study explores the potential disappearance of traditional knowledge about local breeds from an ethnozootechnical perspective. The objectives were (I) to establish the breeding history of goat and sheep breeds/ecotypes in the semi-arid region of Paraíba; (II) to estimate the diversity index; and (III) to evaluate the selection criteria used by local communities in four territories: Coletivo, Borborema, Folia, and Casaco. The study aims to support genetic conservation and improvement programs. Data collection was participatory, involving breeders from all territories. To recover the breeds’ history, questionnaires were applied to the oldest breeders, called the “guardians.” Two workshops were held to assess the diversity of breeds in the past landscape (PP) and current landscape (PA), using the Recall technique. Responses were recorded in spreadsheets for analysis. Descriptive statistics and multiple correspondence analysis (MCA) were used to assess animal distribution. The Shannon index indicated a drop in goat breed diversity, from 1.3 (PP) to 0.87 (PA). For sheep breeds, it decreased slightly from 0.7 to 0.66. Breeders reported valuing traits such as adaptability, disease resistance, fertility, and conformation. Their strong emotional connection with the animals highlights the breeds’ cultural relevance. A strong connection was found between the loss of genetic material in the studied territories and the extinction of local communities’ knowledge about local breeds. Full article

Muehlenbeckia tuggeranong is an endangered subshrub with an estimated seven individuals remaining in its native habitat, and twelve held in an ex situ living collection in the Australian National Botanic Gardens, Canberra. We conducted a genetic analysis on all known individuals of the species both in situ and ex situ to inform the conservation management of one of the rarest plants in Australia, certainly the rarest in the Australian Capital Territory. We found recent seedlings did not result from hybridisation with M. axillaris but resulted from sexual reproduction within the ex situ collection, leading to greater genetic diversity ex situ than in situ. However, low genetic diversity across the species indicates a high risk of extinction. Through simulations we identified the optimal breeding pairs to minimise further genetic diversity loss and increase the number of available genotypes for future reintroduction. Our work highlights the need to incorporate genetically informed breeding programs into living collections management of endangered plant species, particular those with unique life history traits. Full article

Type I allergies are triggered by immunoglobulin E (IgE)-mediated hypersensitivity reactions upon allergen exposure. Dogs are diagnosed with allergic dermatitis based on history, clinical signs, and allergen-specific IgE detection. Using the multiple allergen simultaneous test (MAST)–immunoblot assay, this study measured IgE concentrations and analyzed the proportion of dogs showing allergen-specific IgE positivity, and IgE concentrations of environmental and food allergens in South Korea. We examined data from canine serum using the MAST assay in 2023; the allergen panel included 130 allergens. Data were analyzed, with results greater than zero regarded as positive for the prevalence measurements and concentrations compared among subgroups. Overall, 2663 samples were evaluated to assess the proportion of dogs showing allergen-specific IgE positivity and mean concentrations of environmental and food allergens. Among the environmental allergens, Alternaria spp. had the highest IgE prevalence, whereas Japanese cedar had the highest mean IgE concentration. Allergen-specific differences were observed among subgroups categorized by age, sex, and breed. To our knowledge, this research is the first large-scale study to analyze canine serum using a MAST assay to assess the IgE prevalence of allergen-specific IgE positivity and concentration and to examine data by age, sex, and breed. These findings provide information for diagnosis and management of canine allergies. Full article

Hybrid necrosis in wheat is caused by an interaction between two genes, Ne1 and Ne2, that triggers the gradual death of plant tissue. This trait affects wheat breeding as the gene Ne2 is the same as the gene Lr13 for leaf rust resistance. We have built a three-marker haplotype that consists of single nucleotide polymorphism (SNP) marker information already available on genotyping arrays for the determination of the presence and absence of Ne2. In this work, test crosses of eight bread wheat varieties with known and unknown Ne1 carriers showed that six of them possessed Ne2. We analyzed a set of wheat varieties which had partial SNPs and phenotypic data, i.e., hybrid necrosis and leaf rust reactions, using Kompetitive Allele-Specific PCR (KASP) markers previously available for Ne2. The observed haplotypes of the SNP markers RAC875_c1226_652, Ra_c4397_542, and AX-110926324 perfectly matched the KASP marker variants for Ne2 and ne2. A prediction, based on these SNP haplotypes, of the distribution of Ne2 in wheat varieties, predominantly from Germany and released between 1900 and 2024, showed that breeding steadily increased the proportion of Ne2 in the German gene pool. Full article

The Arabian leopard (Panthera pardus nimr), a critically endangered subspecies endemic to the Arabian Peninsula, faces severe threats from habitat loss, prey depletion, and inbreeding, with fewer than 200 individuals remaining. Genomic resources for this subspecies have been scarce, limiting insights into its evolutionary history and conservation needs. Here, we present the first complete mitochondrial DNA (mtDNA) sequence of P. pardus nimr, derived from a wild-born male sampled at the Oman Wildlife Breeding Centre in 2023. Using PacBio HiFi sequencing, we assembled a 16,781 bp mitogenome (GenBank: PQ283265) comprising 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region, with a GC content of 40.94%. Phylogenetic analysis, incorporating 17 Panthera mtDNA sequences, positions P. pardus nimr closest to African leopard populations from South Africa (Panthera pardus), while distinguishing it from Asian subspecies (P. pardus japonensis and P. pardus orientalis). This mitogenome reveals conserved vertebrate mitochondrial structure and provides a critical tool for studying Panthera genus evolution. Moreover, it enhances conservation genetics efforts for P. pardus nimr by enabling population structure analysis and informing breeding strategies to strengthen its survival. Full article

Group A rotaviruses (RVAs) are a major cause of acute dehydrating diarrhea in infants and young animals worldwide. In rabbits, RVAs are associated with enteric disease, likely in combination with other pathogens. We report the identification and characterization of a lapine RVA strain in an Italian rabbit breeding farm. Increased mortality rates associated with enteric symptoms were reported in the facility in post-weaning rabbits around 40 days of age. By quantitative RT-PCR, an RVA strain was identified in the intestinal contents of deceased rabbits. A PCR-based enrichment protocol coupled with Nanopore sequencing allowed the reconstruction of the nearly complete genome of a rabbit RVA strain, Rabbit-wt/ITA/36-9/2022/G3P[14], with a genotype constellation (G3-P[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) conserved among lapine RVAs. Each of the 11 gene segments displayed high nucleotide identity and phylogenetic clustering with lapine rotavirus strains, as well as two Belgian human G3P[14] strains, which had been shown to have a zoonotic (lapine) origin. However, the NSP2 gene of strain 36-9 clustered closer with a group of rare human G3P[9] strains, suggesting a common path during their evolution. Gathering sequence data on animal RVAs is pivotal to reconstructing the history of homologous and heterologous RVAs in various mammals, including humans. Full article

Unraveling the evolutionary history of Brassica L. crops and their wild relatives remains a key challenge in plant evolutionary biology. Brassica cretica is considered the closest living relative of the cultivated B. oleracea. It is mainly distributed in the Aegean Islands and the neighboring mainland regions of Greece and Anatolia, and exhibits extensive phenotypic variability, obscuring its infraspecific classification. In this study, we analyzed five Greek populations of B. cretica and one B. oleracea botanical variety using SSR markers to assess genetic diversity and differentiation. High genetic diversity was detected within natural populations, with a mean of 21.9 alleles per locus and an expected heterozygosity of 0.647. Significant genetic differentiation (Fst = 0.812) revealed the presence of four distinct gene pools, partly supporting the current infraspecific classification of B. cretica. The cultivated plants cluster closely with B. cretica subsp. cretica, supporting the hypothesis of an Eastern Mediterranean origin. Our findings suggest that B. cretica subsp. cretica may have been introduced to suitable habitats or that cultivated plants may have reverted to a feral state in the Peloponnese, given the genetic similarity between populations from Crete and northern Peloponnese. The identified genetic diversity underscores the importance of B. cretica as a genetic resource for breeding programs and highlights the need for conservation, particularly for populations exhibited unique genetic traits. Full article