Search Results (2,064)

Splicing regulatory sequences are cornerstones for exon recognition. Mutations that modify them can severely compromise mRNA maturation and protein production. A wide range of mutations, including SNPs and InDels, can influence splicing regulatory signals either directly (e.g., altering canonical donor and acceptor dinucleotides) or indirectly (e.g., creating cryptic splice sites). CSN1S1 and CSN1S2 genes encode for the two main milk proteins, αs1 and αs2 caseins, respectively. They represent a remarkable and unique example of the possibilities for alternative splicing of individual genes, both due to the high number of alternative splices identified to date and for recognized allele-specific splicing events. To date, at least 13 alleles of CSN1S1 originating from mutations that affect canonical splice sites have been described in Bos taurus (CSN1S1 A, A1, and H), Ovis aries (E, H, and I), Capra hircus (D and G), Bubalus bubalis (E, F) and Camelidae (A, C, and D). Similarly, allele-specific splicing events have been described at the CSN1S2 locus in B. taurus. (CSN1S2 D), C. hircus (CSN1S2 D), B. bubalis (CSN1S2 B, B1, and B2), Equus asinus (CSN1S2 I B), and Camelidae. This review highlights that mutations affecting canonical splice sites, particularly donor sites, are significant sources of genetic variation impacting the casein production of the main dairy livestock species. Currently, a key limitation on this topic is the lack of detailed functional and proteomic studies. Future research should leverage advanced omics technologies like long-read transcriptomics and allele-resolved RNA sequencing to characterize these splicing mechanisms, guiding precision breeding strategies. Full article

Due to persistent poaching and habitat fragmentation, wild forest musk deer (Moschus berezovskii) in China have sharply declined; although captive breeding helps, frequent gut diseases limit further expansion. This study used high-throughput 16S rRNA sequencing to analyze the effects of age, season variation, and compound probiotics on the gut microbiota of captive individuals. The results demonstrated that compound probiotics exerted a significantly greater influence on gut microbial composition, α-diversity, and functional variation compared to the effects of age or seasonal factors. β-diversity analysis confirmed greater differences between probiotic-treated and control groups than among age or seasonal groups. Microbial community assembly was mainly driven by deterministic processes, with stochastic processes also playing a role in winter. Compound probiotics markedly reshaped dominant bacterial taxa at both phylum and genus levels, with Acinetobacter identified as a key biomarker. They also significantly modulated metabolic and phenotypic traits, decreasing functions related to Gram-positive and aerobic bacteria while enhancing those linked to Gram-negative characteristics. Environmental correlation analysis further demonstrated that compound probiotics exerted a stronger influence than both age and seasonal factors. The findings underscore the value of dietary and probiotic strategies for enhancing gut health and resilience in endangered forest musk deer. Full article

Methane (CH₄) is the second largest greenhouse gas (GHG) after carbon dioxide (CO₂), and ruminant production is an important source of CH₄ emissions. Among the six types of livestock animal species that produce GHGs, cattle (including beef cattle and dairy cows) are responsible for 62% of livestock-produced GHGs. Compared to beef cattle, continuous lactation in dairy cows requires sustained energy intake to drive rumen fermentation and CH₄ production, making it a key mitigation target for balancing dairy production and environmental sustainability. Determining how to safely and efficiently reduce CH₄ emissions from dairy cows is essential to promote the sustainable development of animal husbandry and environmental friendliness and plays an important role in improving feed conversion, reducing environmental pollution, and improving the performance of dairy cows. Combined with the factors influencing CH₄ emissions from dairy cows and previous research reports, this paper reviews the research progress on reducing the enteric CH₄ emissions (EMEs) of dairy cows from the perspectives of the CH₄ generation mechanism and emission reduction strategies, and it summarizes various measures for CH₄ emission reduction in dairy cows, mainly including accelerating genetic breeding, improving diet composition, optimizing feeding management, and improving fecal treatment. Future research should focus on optimizing the combination of strategies, explore more innovative methods, reduce EME without affecting the growth performance of dairy cows and milk safety, and scientifically and effectively promote the sustainable development of animal husbandry. Full article

The analysis of proteins in stool samples can significantly enhance the study of mammalian physiology and disease. In this study, we investigated the fecal proteome of clinically healthy dogs (n = 26) by a label-free proteomics approach to evaluate the impact of breed differences. The dogs were divided into two groups (n = 13 each) based on their breed, specifically Weimaraner and Dalmatian, the former known for their possible susceptibility to gastrointestinal disease. Quantitative and qualitative differences between the two experimental groups were identified based on analyses performed on pooled biological samples. The overall fecal proteome profile comprised 58 proteins, of which 37 were common, while comparative proteomics analysis detected 15 proteins with different abundances. Notably, the fecal proteome of Weimaraners showed an over-representation of proteins such as pantetheinase, which promotes inflammatory reactions; ferritin heavy chain and hemoglobin, possibly associated with gut ulceration and/or rectal bleeding typical of IBD; and anionic trypsin, implicated in inflammatory bowel disease. Notably, in Dalmatians, despite the absence of specific predispositions, some proteins associated with chronic enteropathy (e.g., carboxypeptidase B and serine protease 1) were also over-represented. Additionally, some proteins linked to breed variation included enzymes associated with “protein digestion and absorption” and “glycolysis and gluconeogenesis”. These findings suggest, for the first time, that the variable breed is a factor that may potentially influence the fecal proteome in dogs. Full article

The DHI data is crucial for monitoring the udder health of dairy cows during the breeding process. This study aimed to investigate the factors influencing milk production in dairy cows throughout this period. We analyzed DHI data from Holstein dairy cows in the Heilongjiang region, alongside the incidence of mastitis. The findings revealed that high-yielding cows demonstrated significantly higher peak milk yield days, peak milk yield, urea nitrogen levels, 305-day milk yield, and persistency (p < 0.0001) compared to their low-yielding counterparts. Conversely, high-yielding cows exhibited lower protein rates, fat-to-protein ratios, and milk fat rates (p < 0.0001). Additionally, the somatic cell count (SCC) in high-yielding cows was significantly lower than that in low-yielding cows (p < 0.0001). The multivariate linear regression analysis of the DHI data indicated that parity was the primary determinant affecting both milk yield and SCC. Statistical analysis of cows with clinical mastitis revealed that those experiencing a single episode of clinical mastitis during the lactation period were predominantly in their first and second parities, while recurrent cases were primarily observed in the second and third parities. These results suggest that as the number of lactations increases, the SCC also rises, reflecting the cumulative impact of parity on the udder health of dairy cows. Full article

Understanding the reproductive ecology of birds and the factors influencing nest predation is essential for developing scientifically sound and effective bird conservation strategies. Certain pheasant species sensitive to environmental changes are vulnerable to threats and face survival pressures such as habitat destruction and human activities. However, research related to their reproductive ecology is lacking. Here for the first time we reported information on breeding biology of the Chinese francolin (Francolinus pintadeanus). This study was conducted during the breeding seasons of the Chinese francolin in 2021, 2023, 2024, and 2025, combining traditional survey and infrared camera technology to monitor its reproductive ecology and nest predators in the Datian and Bangxi Reserves and to identify its potential predators through artificial nest experiments. All nests were open-ground nests located at the roots of dwarf shrubs and grasses. Our findings revealed that the breeding season of the Chinese francolin was mainly in March–September, peaking in May; its clutch size was 4.09 ± 1.27 (N = 22), reproductive success was 27.27%, and 16 nests were failed; and all failed nests were predated, with abandoned nests accounting for 93.75% of the failed nests. In artificial nest experiments, the predation rates of Datian Reserve and Bangxi Reserve were 70.91% (N = 55) and 60.00% (N = 30), respectively, with no significant difference in predation rates between the fully covered and exposed groups (Datian: χ² = 0.258, p = 0.612; Bangxi: p = 0.710). Natural nest monitoring and artificial nest experiments on the Chinese francolin identified snakes and the small Indian civet (Viverricula indica) as the main predators in Datian Reserve, as well as the greater coucal (Centropus sinensis) and wild boar (Sus scrofa) as potential predators. In contrast, the main predators in Bangxi Reserve were snakes and rodents. These findings indicate differences in nest predator taxa between the two reserves. We recommend prioritizing the restoration of dwarf scrub vegetation and optimizing the habitat management strategy in these reserves to better protect the breeding habitats of pheasants while promoting long-term stability and continuation of their populations. Full article

Starch serves as a crucial storage substance in both cereal crops and root/tuber crops, with its composition and properties determining the quality of storage organs. The Waxy (Wx) gene, encoding a key enzyme in starch biosynthesis, plays a pivotal role in this metabolic pathway. However, existing reviews seldom systematically elaborate on Wx gene regulatory mechanisms from the perspective of intrinsic molecular networks. Focusing on the model crop rice, this article synthesizes research advances in Wx-mediated starch biosynthesis regulation over the past decade. We analyze the structural features of the Wx gene and factors influencing its regulatory function during starch synthesis. In conclusion, future research directions are proposed to provide references for Wx gene studies in other crops, as well as theoretical foundations for rice varietal improvement and molecular design breeding. Full article

Cryptorchidism is a common congenital disorder in male horses characterized by the failure of one or both testes to descend into the scrotum. This developmental anomaly has important clinical, surgical, and economic implications, particularly in breeding animals. This retrospective study investigates the prevalence and laterality of cryptorchidism in a large equine population presented to two veterinary referral hospitals—Colorado State University Veterinary Teaching Hospital (CSU VTH, 1984–2014) and Oakridge Equine Hospital (OEH, 2008–2023). Medical records were reviewed to identify affected horses, and data on breed, age, and laterality of retained testes were collected. Anatomical location of retention (inguinal vs. abdominal) was excluded due to inconsistent documentation across the study period. A total of 777 horses met the inclusion criteria, with Quarter Horses comprising the majority of clinical cases. Quarter Horses exhibited a strong predisposition for left-sided testicular retention, whereas Thoroughbreds and Arabians more commonly presented with right-sided retention. These breed-specific trends in laterality suggest possible developmental factors influencing testicular descent. Understanding these patterns can aid in clinical diagnosis, improve surgical planning, and contribute to evidence-based breeding recommendations aimed at reducing the incidence of cryptorchidism in equine populations. Full article

Grafting constitutes a crucial approach for the preservation of pine clones. Slash pine is commonly used as the rootstock for grafting Masson pine scions in Guangxi. In this context, the fresh oleoresin samples of Masson pine, slash pine, and grafted pine (with Masson pine as scion and slash pine as rootstock) were analyzed by gas chromatography–mass spectrometry and gas chromatography, and the key chemical components (α-pinene, β-pinene, longifolene, and isopimaric acid) that can quickly and accurately distinguish the oleoresin of Masson pine and slash pine were found and identified. According to the changes in the relative content of key compounds of oleoresin in scion and rootstock, it was found that the oleoresin of rootstock and scion could interact. Further research showed that the mutual influence of oleoresin between rootstock and scion was persistent, and the influence of rootstock on oleoresin at the scion was affected by height. However, the height effect included a large individual differences, which were not significantly related to the grafting height, tree height, diameter at breast height, etc., but may have been related to the differences in synthesis speed of oleoresin between rootstocks and scions. This work reveals the possible mechanism of mutual influence and secretion of oleoresin in grafted pine trees, laying a foundation for the study of the characteristics of oleoresin from pines grafted by different types, with great significance for the breeding of pine with high yield of oleoresin, and the production and application of special compounds containing oleoresin. Full article

Suburban forest patches can have important conservation value for birds. This is a hopeful trend because the extent of urbanization is increasing, many avian populations are declining, and urban areas are where most people interact with wildlife. There is evidence that, despite an increased density of potential predators, the breeding success of birds in urban or suburban forest patches is comparable to that in rural areas. However, extremely limited data exists on the fledgling life stage of birds in urban or suburban areas, even though it is known that the fledgling stage strongly influences population growth rates. We used radio telemetry to look at the survival, movement, and habitat use of fledgling Wood Thrushes (Hylocichla mustelina) originating from nests in suburban forest patches and in larger swaths of rural, undeveloped forests in western Massachusetts. We tracked 168 fledglings over four field seasons and found that survival was similar for rural and suburban fledglings. Fledglings had lower mortality as they aged. Force-fledging and being left outside the nest after radio-tagging had a negative effect on survival, and we developed techniques to minimize its occurrence. We also found that rural fledglings moved farther from their natal nests, at any given age, than suburban fledglings. Fledglings in both suburban and rural sites selected denser understory growth, and the use of non-forested land cover increased as they aged. Full article

The captive breeding of marine ornamental fish with specialized larval requirements—such as Chaetodontoplus mesoleucus—remains a major bottleneck in aquaculture, largely due to the lack of techniques tailored to their unique morphological and nutritional needs. The global marine ornamental aquaculture market is valued at approximately USD 2.15 billion annually; however, only around 10% of marine ornamental species are currently supplied through captive breeding, highlighting a substantial technological gap. The artificial propagation of C. mesoleucus is particularly challenging due to the species’ small mouth gape and high nutritional demands during early development. To address this issue, we evaluated the effects of three live-prey types—Euplotes sp., Brachionus sp., and Bestiolina coreana—as well as a mixed diet containing all three, on larval performance. From 3 days post-hatch, larvae were fed each prey type at equal densities (15–20 individuals/mL), and water quality was carefully maintained to minimize external influences. Survival and total length were assessed at 14 dph. At the end of the trial, the mixed-diet group showed the highest survival rate (36.2 ± 5.6%), whereas larvae fed only B. coreana exhibited the greatest total length (7.4 ± 1.2 mm) and a high metamorphosis rate (97.8%). These findings demonstrate that prey selection significantly influences the early survival and growth in C. mesoleucus larvae and highlight the critical role of copepods in promoting growth performance. However, as larval biomass was not quantified, the findings should be interpreted with caution, and future studies incorporating biomass assessments are needed to draw more conclusive inferences. The successful mass rearing of this species supports the feasibility of captive production to reduce wild harvesting, protect coral-reef biodiversity, and promote sustainable ornamental aquaculture. Full article

Understanding the genetic basis of growth and feed efficiency traits is essential for advancing beef cattle breeding programs. This study analyzed the average daily gain (ADG; from birth [day 0] to 200 days of age) and the Kleiber ratio (KR) in Charolais and Limousine calves raised in Romania. The data collection period was between 2020 and 2022. Genetic parameters were estimated using a maternal animal model based on 936 Charolais and 726 Limousine records sourced from the Romanian Breeding Association. For both traits, Charolais showed lower direct, maternal and total heritability estimates (0.44, 0.17 and 0.44 for ADG; 0.44, 0.17 and 0.44 for KR) compared to Limousine (0.67, 0.26 and 0.67 for ADG; 0.66, 0.26 and 0.67 for KR). The sex of calf and season of birth influenced the average daily gain and Kleiber ratio. Strong correlations were observed between the average daily gain and Kleiber ratio. The Kleiber ratio was confirmed as a reliable genetic indicator of feed efficiency across both breeds. Full article

The European seabass is a key Mediterranean aquaculture species, vital for sustainably meeting rising global protein demands amid declining wild fish stocks. Genetic analyses have identified the six6 gene as a candidate target of domestication and selective breeding, with two SNPs showing significant genotypic differences between wild and farmed European seabass populations. Further analyses revealed differential six6 expression between larval and juvenile stages, suggesting a potential developmental role. This study explores associations between these SNPs and important aquaculture traits across early developmental stages. Seabass samples were examined at 34 days post-hatching (dph, larval stage) and 71 dph (juvenile stage). We examined associations between specific six6 SNPs and morphological traits using traditional morphometrics, analyzing 20 and 26 characteristics in the larval and juvenile stages, respectively. Shape and size differences were examined with allometric correction. The six6 gene was primarily associated with body length, height, and caudal fin morphology. Notably, homozygous six6 genotype combinations at the studied SNPs were associated with increased body length in a developmental stage-specific manner. Variation in this gene also appeared to influence eye development in juveniles. These findings offer phenotypic evidence supporting previous genetic and expression studies in European seabass, highlighting their potential applications in fisheries and aquaculture. Full article

The Rubus genus includes numerous berry species known for their rich phytochemical content and antioxidant properties. However, comparative evaluations of wild and cultivated Rubus germplasms in East Asia remain limited. This study aimed to identify superior resources with potential for use in functional foods and breeding through integrated phytochemical and antioxidant profiling. Fifteen accessions collected across Korea were assessed for fruit coloration, total phenolic content (TPC), total flavonoid content (TFC), five antioxidant activities (DPPH, ABTS⁺, superoxide, ferric-reducing activity power, and Fe²⁺ chelation), and anthocyanin composition by high-performance liquid chromatography‒Mass spectrometry. The TPC ranged from 1.03 to 7.54 mg g⁻¹ of frozen fruit, and TFC ranged from 2.75 to 7.52 mg g⁻¹ of frozen fruit, with significant differences among accessions (p < 0.05). Black-colored fruits such as R. coreanus and R. ursinus varieties exhibited high anthocyanin levels (approximately total 471 and 316 mg g⁻¹ extracts, respectively), with cyanidin-O-hexoside and cyanidin-3-O-glucoside being the dominant pigments. However, the antioxidant performance of these accessions varied. A wild R. crataegifolius (no. 9, resource F) showed the highest TPC and ranked within the top five in multiple antioxidant assays, despite its moderate anthocyanin content. Correlation analysis revealed that TPC and TFC were significantly associated with antioxidant activity (p < 0.05) but not directly with anthocyanin content. These results suggest that antioxidant potential is influenced by a broader spectrum of phenolic compounds, rather than anthocyanins alone. These findings underscore the need to look beyond visual traits and focus on biochemical evidence when selecting elite Rubus accessions. Full article

Background: This study investigates the expression of microRNAs (miRNAs) in the semitendinosus muscle of cattle breeds with varying intramuscular fat (IMF) deposition to identify key miRNA regulators of beef marbling, utilizing Hereford (HER; higher IMF) and Holstein-Friesian (HF; moderate IMF) bulls, and Limousin (LIM; low IMF) bulls with lower IMF in the semitendinosus muscle. Methods: MicroRNA profiling used custom bovine microarrays and the Agilent software. The selected miRNAs, miR-34a, miR-149-5p, miR-208b, miR-499, miR-660, and miR-1343-5p, were chosen for validation using real-time PCR, confirming their differential expression. Target prediction utilized miRWalk, while functional and pathway analyses were conducted using the DAVID database to interpret biological relevance. Results: Microarray analysis identified 51 differentially expressed miRNAs. Among these, 24 exhibited consistent expression patterns in high-marbling breeds compared to the low-marbling LIM breed. Bioinformatic analysis of the 4941 predicted target genes of these 24 miRNAs revealed significant enrichment in pathways crucial for marbling, including the adipocytokine, AMPK, MAPK, and PI3K-Akt signaling pathways, as well as biological processes such as cell differentiation and lipid homeostasis. Notably, miR-34a and miR-149-5p emerged as significant regulators, with miR-34a targeting genes like SIRT1, HMGA2, PTPN11, VEGFA, FGF1, FGF2, and BRAF, and miR-149-5p influencing adipogenesis and lipid metabolism through its association with crucial KEGG pathways such as PI3K–Akt, MAPK, PPAR, TGF-β, cAMP, and Wnt signaling, all of which collectively influence adipocyte differentiation, lipid metabolism, cell cycle control, and angiogenesis. Conclusions: The findings underscore identified miRNAs’ possible coordinated regulatory role, particularly miR-34a and miR-149-5p, in the complex molecular mechanisms governing IMF deposition in cattle, providing potential targets for improving beef quality. Full article