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27 pages, 11137 KB  
Article
Non-Invasive Characterization of Locomotor and Ventilatory Responses in Rainbow Trout Under Acute Ammonia Nitrogen Stress
by Guanxu Li, Liu Yang, Ziyi Yin, Qihong Chen, Haoze He and Chengguo Wang
Biology 2026, 15(13), 1080; https://doi.org/10.3390/biology15131080 (registering DOI) - 6 Jul 2026
Abstract
Ammonia nitrogen is one of the most common environmental stressors in aquaculture water environments, and its accumulation can induce physiological disturbance, altered ventilation regulation, and abnormal behavioral responses in fish. To achieve non-invasive quantitative characterization of rainbow trout responses to ammonia nitrogen stress, [...] Read more.
Ammonia nitrogen is one of the most common environmental stressors in aquaculture water environments, and its accumulation can induce physiological disturbance, altered ventilation regulation, and abnormal behavioral responses in fish. To achieve non-invasive quantitative characterization of rainbow trout responses to ammonia nitrogen stress, this study developed a computer-vision-based framework for the integrated analysis of locomotor behavior and ventilation activity. Rainbow trout were exposed to four ammonia nitrogen concentrations: 0, 15, 30, and 60 mg/L. A total of 16 rainbow trout were used in this study, with an average body length of 14.0 ± 1.0 cm and an average body weight of 38.65 ± 2.42 g. The fish were assigned to four experimental aquaria, with four fish maintained in one aquarium for each TAN treatment. Stereo videos for locomotor behavior analysis and monocular mouth-region videos for ventilation analysis were simultaneously collected, and the final 5 min of each recording was analyzed. YOLOv11n, multi-object tracking, and stereo vision were used to extract three-dimensional position sequences of rainbow trout and calculate the amount of exercise, average swimming speed, and spatial distribution. Meanwhile, optical-flow analysis was applied to quantify mouth opening–closing motion and estimate ventilation frequency. The results showed that with increasing ammonia nitrogen concentration, rainbow trout locomotor behavior tended to be suppressed, with average swimming speed showing the clearest decrease, whereas ventilation frequency continuously increased. Average swimming speed decreased from 3.83 cm/s in the 0 mg/L group to 1.03 cm/s in the 60 mg/L group, while ventilation frequency increased from 84.91 breaths/min to 133.43 breaths/min. Compared with locomotor indicators, ventilation frequency showed a more stable response to changes in ammonia nitrogen concentration. This study achieved the synchronous quantification of rainbow trout locomotor behavior and ventilation activity, revealing a differentiated response pattern characterized by enhanced ventilation and suppressed locomotor behavior under acute ammonia nitrogen stress. These findings provide a methodological reference for fish stress assessment and risk warning in aquaculture environments. Full article
(This article belongs to the Section Marine and Freshwater Biology)
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9 pages, 214 KB  
Perspective
Informal Treatment Practices in Ornamental Aquaria: An Overlooked Interface Between Aquatic Animal Health, Antimicrobial Stewardship, and One Health
by Marco Dettori
Animals 2026, 16(13), 2056; https://doi.org/10.3390/ani16132056 - 3 Jul 2026
Viewed by 238
Abstract
Ornamental aquarium keeping collectively involves millions of freshwater, marine, and reef systems in which fish, corals, invertebrates, biofilters, microbial communities, and human husbandry practices are closely interconnected. In these domestic aquatic animal systems, preventive and curative treatments may include antimicrobials, antiparasitics, antiseptics, oxidizing [...] Read more.
Ornamental aquarium keeping collectively involves millions of freshwater, marine, and reef systems in which fish, corals, invertebrates, biofilters, microbial communities, and human husbandry practices are closely interconnected. In these domestic aquatic animal systems, preventive and curative treatments may include antimicrobials, antiparasitics, antiseptics, oxidizing agents, copper-based products, dips, and commercial formulations targeting microbial proliferations or visible system deterioration. Many interventions occur without veterinary diagnosis, microbiological confirmation, standardized dosing, active-ingredient transparency, or post-treatment monitoring. This raises concerns for aquatic animal health and welfare, as whole-system treatments may affect not only the intended pathogen or pest but also non-target organisms, biofilter communities, animal-associated microbiota, and water quality stability. Digital communities and online platforms can rapidly circulate empirical treatment protocols, although they may also provide opportunities for stewardship education and improved husbandry guidance. Current evidence does not support interpreting ornamental aquaria as major independent drivers of antimicrobial resistance. The more defensible concern is stewardship: biologically active compounds may be used repeatedly and empirically in animal systems without diagnosis, professional guidance, or systematic monitoring. This Perspective argues that ornamental aquaria should be recognized as an overlooked interface between aquatic animal health, welfare, antimicrobial stewardship, and One Health. It proposes a research and communication agenda focused on treatment transparency, diagnosis, prevention, biofilter protection, and responsible care practices. Full article
(This article belongs to the Section Aquatic Animals)
2 pages, 150 KB  
Abstract
Freshwater Aquarium Fish Imports: From Species and Quantities to Origins and Risks
by Luísa Sousa, Carla Silva, Pedro Anastácio and Filipe Ribeiro
Proceedings 2026, 146(1), 102; https://doi.org/10.3390/proceedings2026146102 - 22 Jun 2026
Viewed by 128
Abstract
Introduction: The global ornamental fish trade is a rapidly expanding sector and a major pathway for the introduction of non-native species, particularly in freshwater ecosystems in developed countries. The introduction of non-native species can result in a range of ecological impacts, including predation, [...] Read more.
Introduction: The global ornamental fish trade is a rapidly expanding sector and a major pathway for the introduction of non-native species, particularly in freshwater ecosystems in developed countries. The introduction of non-native species can result in a range of ecological impacts, including predation, competition, hybridization, and disease transmission, often leading to ecosystem degradation and biotic homogenization. Therefore, it represents a clear ecological risk, especially serious in freshwater systems with a high endemism rate, such as the Iberian Peninsula. The occurrence of ornamental non-native species in the Iberian Peninsula has been common, yet little has been done to describe the overall ornamental fish trade as a first step to evaluate invasion risk. Objective: This study characterizes the import dynamics of ornamental freshwater fish in Portugal between 2020 and 2024 and evaluates its potential role as a pathway for species introductions. Methodology: Data were obtained from the Institute for Nature Conservation and Forests database, including information on species composition, quantities, sizes, prices, and countries of origin. A total of 431 records were analyzed, resulting in 27,689 validated entries of imported freshwater fish, which were taxonomically verified and filtered to retain only freshwater species. Results: A total of 666 species from 88 families were identified, with an average of 380 species imported annually, reflecting high taxonomic diversity. Import volumes increased from approximately 1.25 million individuals in 2020 to 1.75 million in 2024, while total import value nearly doubled from €300,000 to €600,000. Imports were predominantly from five Southeast Asian countries, particularly Indonesia and Vietnam, and largely supported by aquaculture production (88%). A stable core of highly traded species, including Carassius auratus, Poecilia reticulata, and Paracheirodon innesi, suggests a sustained and very high propagule pressure, while some species variability was observed on yearly basis, suggesting the importance of monitoring programs on actual imports. Conclusions: Overall, the ornamental fish trade represents a significant and growing pathway for biological invasions in Portugal. The combination of increasing trade volume, high species diversity, and persistent dominance of key taxa highlights the need for improved monitoring, regulatory frameworks, and public awareness to mitigate ecological risks. Full article
(This article belongs to the Proceedings of The XI Iberian Congress of Ichthyology)
6 pages, 1140 KB  
Case Report
Dangerous Measures: A Case Report and Review of Motoro Ray Envenomation
by Philip Dwek, Omer Jamal, Shaleesa Clarke, Kiran Wadhawan and Andrea K. Boggild
Toxins 2026, 18(6), 270; https://doi.org/10.3390/toxins18060270 - 19 Jun 2026
Viewed by 312
Abstract
Aquatic envenomations may cause severe tissue injury, neurologic morbidity, and even mortality among those whose leisure and/or occupational activities expose them to marine and freshwater animals. The Motoro ray, or Potamotrygon motoro (also known as an ocellate river stingray) is endemic to freshwater [...] Read more.
Aquatic envenomations may cause severe tissue injury, neurologic morbidity, and even mortality among those whose leisure and/or occupational activities expose them to marine and freshwater animals. The Motoro ray, or Potamotrygon motoro (also known as an ocellate river stingray) is endemic to freshwater tributaries throughout Brazil, and is a frequent source of severe envenoming of local fisherman and those residing near waterways. Local wound management including immersion in warm water, wound cleaning and debridement, as well as antibiotics are mainstays of treatment, as are local anesthetics (e.g., nerve blocks) and systemic opioid analgesics; however, high-quality evidence supporting such interventions is lacking. We present a case of a Canadian who was envenomed by his pet Motoro ray, and describe his clinical presentation and evolution of symptoms over the subsequent months. With the ever-increasing trade of exotic wildlife, clinicians, public health authorities, and those within the broader wildlife regulatory ecosystem should be attuned for unanticipated adverse consequences, such as those described herein. We further situate this case within the existing published literature around this particular species of ray, which is not typically considered an ornamental fish. Full article
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2 pages, 170 KB  
Abstract
Effect of Experimental Bubble and Light Barriers on Fish Attraction or Repulsion
by Miguel Vieira de Melo Neto, Eduardo Bessa Pereira da Silva, Marcos Alexandre Bolson, Ézio Sargentini Júnior and Luiz Fabrício Zara
Proceedings 2026, 146(1), 13; https://doi.org/10.3390/proceedings2026146013 - 16 Jun 2026
Viewed by 108
Abstract
Introduction: The entry and accumulation of fish inside the suction tubes of hydroelectric power plants can pose risks to these animals. To protect ichthyofauna, repulsion systems employing diverse methodologies have been developed. Objective: The main objective of this study was to investigate the [...] Read more.
Introduction: The entry and accumulation of fish inside the suction tubes of hydroelectric power plants can pose risks to these animals. To protect ichthyofauna, repulsion systems employing diverse methodologies have been developed. Objective: The main objective of this study was to investigate the dissuasive effectiveness of a bubble and light barrier on ichthyofauna. Methodology: The experiment consisted of video recording in three stages, performed in triplicate: before activating the barrier, while the barrier was active, and after deactivating it. The movement of five juvenile Amazonian species (Cichlasoma amazonarum, Dianema urostriatum, Pimelodus blochii, Brycon spp., and Colossoma macropomum) was analyzed across the three stages by counting individuals in specific sectors every 15 s. A total of 30 specimens of each species were used, with 10 individuals allocated to each aquarium. Results: Barrier activation induced repulsion in Pimelodus blochii, Brycon spp., and Colossoma macropomum, but attraction in Cichlasoma amazonarum and Dianema urostriatum. The study reveals that the tested species respond dissimilarly to stimuli from the behavioral barrier. Conclusions: These findings address a research gap regarding native species′ responses to behavioral barriers. They underscore the importance of understanding regional ichthyofauna behavior for designing optimized bubble and light barrier systems to enhance method efficacy. The observed effectiveness highlights the potential of this robust, low-cost technology for ichthyofauna protection in hydroelectric plants. Full article
(This article belongs to the Proceedings of The XI Iberian Congress of Ichthyology)
15 pages, 4250 KB  
Article
Dietary Escherichia coli Nissle 1917 Modulates Gut Microbiota and Inflammatory Cytokines in Hybrid Grouper in a Recirculating Aquarium System
by Qianglin Cheng, Yirui Ma, Yaqi Yuan, Yuhan Sun, Hong Wu and Xubin Fu
J. Zool. Bot. Gard. 2026, 7(2), 23; https://doi.org/10.3390/jzbg7020023 - 12 Jun 2026
Viewed by 306
Abstract
Probiotics are widely studied as antibiotic alternatives in commercial aquaculture, yet their effects on fish maintained under long-term aquarium conditions remain poorly understood. This study addressed this gap by evaluating dietary Escherichia coli Nissle 1917 (EcN) supplementation on gut microbiota and inflammatory cytokine [...] Read more.
Probiotics are widely studied as antibiotic alternatives in commercial aquaculture, yet their effects on fish maintained under long-term aquarium conditions remain poorly understood. This study addressed this gap by evaluating dietary Escherichia coli Nissle 1917 (EcN) supplementation on gut microbiota and inflammatory cytokine expression in hybrid grouper (Epinephelus fuscoguttatus♀ × E. lanceolatus♂) from a recirculating aquarium system. In this study, hybrid grouper were maintained in triplicate tanks under long-term aquarium environments, and fed a basal diet with 1 × 108 CFU/g EcN (SS group) or a control diet (CS group) for 28 consecutive days. Based on 16S rRNA high-throughput sequencing and qPCR, the intestinal microbiota and expression levels of IL-4, TNF-α, and IL-1β were measured. At the phylum level, the relative abundance of Firmicutes increased from 15.63% (CS) to 66.70% (SS), while Proteobacteria decreased from 76.77% to 30.61%. At the genus level, Exiguobacterium became the dominant taxon in the SS group. Furthermore, EcN supplementation significantly upregulated IL-4 expression and downregulated TNF-α and IL-1β expression. EcN supplementation significantly altered gut microbiota composition, with marked changes in community structure and notable shifts in dominant taxa. Thus, this study provides one of the investigations into EcN-mediated restructuring of intestinal bacterial communities and modulation of host immune transcriptional responses in hybrid grouper maintained under controlled aquarium settings. These findings offer a foundation for designing microbiome-targeted interventions in captive marine fish systems. Full article
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8 pages, 6633 KB  
Case Report
Systemic Granulomatous Mycobacteriosis in Orbiculate Batfish (Platax orbicularis) Associated with Mycobacterium marinum-like Organism in an Aquarium in South Korea
by Chi Yong Kim, Young-Hyun Goo, Sukhun Oh and Sun-Hee Do
Vet. Sci. 2026, 13(5), 489; https://doi.org/10.3390/vetsci13050489 - 18 May 2026
Viewed by 835
Abstract
In this report, we describe systemic granulomatous mycobacteriosis in an orbiculate batfish from an aquarium in South Korea. Gross examination of the deceased fish showed multifocal nodular lesions in multiple internal organs including the gills, spleen, and kidney. Histopathological analysis demonstrated severe chronic [...] Read more.
In this report, we describe systemic granulomatous mycobacteriosis in an orbiculate batfish from an aquarium in South Korea. Gross examination of the deceased fish showed multifocal nodular lesions in multiple internal organs including the gills, spleen, and kidney. Histopathological analysis demonstrated severe chronic systemic granulomatous inflammation, and Ziehl–Neelsen staining highlighted abundant intralesional acid-fast bacilli. Molecular analysis based on partial sequencing of the 16S ribosomal RNA (rRNA) and heat shock protein 65 (hsp65) genes showed that the detected organism was most closely related to Mycobacterium marinum. Because the molecular analysis was performed using partial sequences obtained from formalin-fixed, paraffin-embedded tissues, definitive species-level identification was not possible. This case represents systemic granulomatous mycobacteriosis associated with a Mycobacterium marinum-like organism in orbiculate batfish in an aquarium in South Korea and emphasizes the need for continuous disease surveillance and improved diagnostic awareness of non-tuberculous mycobacterial infections in ornamental and public aquarium fish. Full article
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17 pages, 2918 KB  
Article
Microbiome as a Tool to Monitor Aquarium Systems
by Wisal A. Elmagzoub, Manfred Weidmann, Marwa H. E. Elnaiem, Andrea Dennig, Uwe Waller, Andreas Bernhard, Jörg Junhold, Ahmed Abd El Wahed, Uwe Truyen and Arianna Ceruti
Vet. Sci. 2026, 13(2), 125; https://doi.org/10.3390/vetsci13020125 - 28 Jan 2026
Viewed by 869
Abstract
The bacterial microbiome in aquaria plays an essential role in system stability by metabolizing toxic compounds like ammonia. This study monitored microbiome changes in seven zoo aquatic systems during their first year to assess responses to external influences. Over one year (October 2021–October [...] Read more.
The bacterial microbiome in aquaria plays an essential role in system stability by metabolizing toxic compounds like ammonia. This study monitored microbiome changes in seven zoo aquatic systems during their first year to assess responses to external influences. Over one year (October 2021–October 2022), water and swab samples were collected from one seawater tank and six filtration systems at regular intervals. Bacterial cultivation included total bacterial counts. Metagenomic analysis was performed on samples corresponding to environmental events using Oxford Nanopore sequencing. Taxonomical analysis at the phylum and genus levels used EPI2ME software. Diversity analyses and statistical tests were performed using R. Total bacterial counts increased steadily after inoculation and stabilized by the end of the collection period. Diversity analysis revealed significant differences within and between freshwater and saltwater tanks. Each aquarium exhibited a distinct bacterial community with frequent compositional changes. Despite environmental conditions and maintenance interventions and resulting disturbances that affected the microbiome, the overall nitrifying capacity remained unaffected. Nitrifying taxa emerged as potential indicators for environmental effects. Combined with investigations of ecological function, next-generation sequencing could facilitate the development of aquarium management protocols, ultimately improving fish welfare. Full article
(This article belongs to the Section Veterinary Microbiology, Parasitology and Immunology)
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30 pages, 1515 KB  
Article
Genomic Diversity and Taxonomy of Aeromonas spp. in Aquarium Fish: Potential Role of Ornamental Fish as Hidden Carriers
by Muhammed Duman, Nihed Ajmi, Hector Carmona-Salido, Görkem Tasci, Artun Yıbar, Soner Altun, Jesús L. Romalde and Izzet Burcin Saticioglu
Fishes 2026, 11(2), 74; https://doi.org/10.3390/fishes11020074 - 23 Jan 2026
Viewed by 1074
Abstract
Aquarium fish are increasingly being recognized as reservoirs of zoonotic pathogens, with Aeromonas species posing a notable risk because of their environmental resilience and opportunistic pathogenicity. This study presents the most comprehensive genome-based investigation to date of Aeromonas diversity in aquarium fish, aiming [...] Read more.
Aquarium fish are increasingly being recognized as reservoirs of zoonotic pathogens, with Aeromonas species posing a notable risk because of their environmental resilience and opportunistic pathogenicity. This study presents the most comprehensive genome-based investigation to date of Aeromonas diversity in aquarium fish, aiming to characterize their taxonomic distribution, population structure, and genomic features. A total of 64 Aeromonas isolates were collected from various aquarium fish species. Wholegenome sequencing was conducted on all isolates to facilitate comparative genomic analyses. Key approaches included multilocus sequence typing (MLST), pairwise Digital DNA-DNA hybridization (dDDH), and the construction of a phylogenomic tree for species-level classification. Furthermore, a population structure analysis was performed to explore genomic diversity and evolutionary trends among the isolates. The results identified 14 distinct Aeromonas species, with A. veronii, A. caviae, and A. hydrophila being the most common. Importantly, several isolates exhibited taxonomic ambiguity, indicating the possible presence of new species or subspecies lineages. Furthermore, antimicrobial resistance gene profiles and virulence factor distributions varied significantly across clades, indicating genomic plasticity. This study highlights the underappreciated genomic complexity of Aeromonas populations in aquarium environments and raises concerns about the public health implications of pathogen reservoirs in ornamental fish. Full article
(This article belongs to the Special Issue Infection and Detection of Bacterial Pathogens in Aquaculture)
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20 pages, 771 KB  
Article
Evaluation of Different Terrestrial Oils as an Alternative to Dietary Fish Oil on Feed Physical Properties, Growth, Feed Utilization, and Fatty Acid Profile of Gangetic Catfish (Mystus cavasius)
by Sadia Taslim Helen, Tanwi Dey, Anwesha Bharoteshwari, Kazi Rakib Uddin, Muhammad Anamul Kabir, Md. Rakibul Hasan and Md. Sakhawat Hossain
Animals 2026, 16(2), 330; https://doi.org/10.3390/ani16020330 - 21 Jan 2026
Viewed by 1204
Abstract
The global demand for fish oil (FO) is increasing while its supply is decreasing, which has limited its use in aquafeeds. Research on alternative terrestrial oils (TOs) for commonly cultured fish species in Bangladesh is limited. This research involved a 70-day feeding experiment [...] Read more.
The global demand for fish oil (FO) is increasing while its supply is decreasing, which has limited its use in aquafeeds. Research on alternative terrestrial oils (TOs) for commonly cultured fish species in Bangladesh is limited. This research involved a 70-day feeding experiment to assess the effectiveness of replacing FO with TOs in the diet of Gangetic catfish (Mystus cavasius). Five diets were formulated: a control diet (D1) with fish meal and FO, and four diets replacing FO with soybean oil (D2), black soldier fly larvae oil (D3), palm oil (D4), or a mixed oil combination (D5) of 50% black soldier fly larvae oil, 25% soybean oil, and 25% palm oil. A total of 675 fish (0.5 g each) were distributed in 15 100 L aquariums (45 fish/aquarium) and fed to satiation twice daily. Fish fed with Diet D5 showed significantly higher growth, followed by those fed with D3, D4, and D1, while D2 resulted in significantly lower growth. Fish on the D5 diet consumed the most feed, followed by those on the D3 and D2 diets, with similar feed intake levels for those on the D1 and D4 diets. FCR, FCE, and PER were not significantly affected by dietary oil sources. Whole-body lipid content (p < 0.05) was significantly lower in the D3 group and higher in the D2 group, while other groups showed intermediate values. The fatty acid composition in the fish reflected their diets: significantly higher n-3 LC-PUFA (EPA + DHA) content was observed in the D1 group, followed by the D4 and D3 groups, and fish fed with D2 and D5 showed significantly lower values. Alpha-linolenic acid C18:3n-3) was significantly higher in the D2 group, followed by the D3, D1, and D4 groups, with the D5 group having a significantly lower value. Total MUFA was significantly higher in D4, followed by D1, D5, and D3; the D2-fed group showed a significantly lower value. Lauric acid (C12:0) was significantly higher in D3, followed by D5; other groups showed significantly lower values. Feed physical properties were significantly influenced by oil type, with water stability, pellet durability, and palatability being significantly highest in the D2 and D5 diets, followed by D3 and D4, with D1 being the lowest. Fish on the D1 and D5 diets had a significantly higher condition factor (CF) compared to fish on the D2 diet. Considering the growth and overall performance in the current study, we concluded that under the current dietary composition, TOs can effectively replace FO in the diets of Gangetic catfish, with mixed oils, black soldier fly larvae oil, and palm oil being the most promising alternatives. Full article
(This article belongs to the Section Animal Nutrition)
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23 pages, 1041 KB  
Article
Dietary Green-Algae Chaetomorpha linum Extract Supplementation on Growth, Digestive Enzymes, Antioxidant Defenses, Immunity, Immune-Related Gene Expression, and Resistance to Aeromonas hydrophila in Adult Freshwater Snail, Bellamya bengalensis
by Hairui Yu, Govindharajan Sattanathan, Mansour Torfi Mozanzadeh, Pitchai Ruba Glory, Swaminathan Padmapriya, Thillainathan Natarajan, Ramasamy Rajesh and Sournamanikam Venkatalakshmi
Animals 2026, 16(2), 289; https://doi.org/10.3390/ani16020289 - 16 Jan 2026
Viewed by 1591
Abstract
Macroalgae plays a significant role in the formulation of innovative and environmentally sustainable approaches to address food challenges. Specifically, green macroalgae serve as dietary supplements aimed at improving the health, growth, and feeding efficiency of various species of marine and freshwater fishes, as [...] Read more.
Macroalgae plays a significant role in the formulation of innovative and environmentally sustainable approaches to address food challenges. Specifically, green macroalgae serve as dietary supplements aimed at improving the health, growth, and feeding efficiency of various species of marine and freshwater fishes, as well as mollusks. The effects of Chaetomorpha linum extract (CLE) on growth performance, physiological responses, and disease resistance are studied in Bellamya bengalensis against Aeromonas hydrophila. In this experiment, adult B. bengalensis (4412 ± 165.25 mg) were randomly divided into 15 rectangular glass aquariums (35 snail/aquaria; 45 L capacity) and their basal diet was supplemented with different levels of CLE, including 0 (CLE0), 1 (CLE1), 2 (CLE2), 3 (CLE3), and 4 (CLE4) g/kg for 60 days. The growth performance in the CLE3 dietary group was significantly higher that of the CLE0 group, exhibiting both linear and quadratic trends in relation to dietary CLE levels (p < 0.05). The activities of pepsin, amylase, and lipase were found to be highest in CLE3 and lowest in CLE0. Both linear and quadratic responses to dietary CLE levels in digestive enzymes were observed (p < 0.05). The activities of superoxide dismutase and catalase in the hepatopancreas were found to be elevated in snails due to the synergistic effect of the supplemented CLE diet. Among different levels of diet given, CLE2-supplemented snails showed an increase in their enzyme activity (p < 0.05). Interestingly, all the CLE-treated snails expressed elevated levels of mucus lysozyme and mucus protein when compared to control (p < 0.05). Additionally, hepatopancreatic acid phosphatase and alkaline phosphatase activity were elevated in snails consuming CLE3 (p < 0.05). The transcription levels of immune-related genes, including mucin-5ac and cytochrome, were significantly elevated in snails that were fed a diet supplemented with 2–4 g of CLE/kg. Furthermore, the transcription level of the acid phosphatase-like 7 protein gene also increased in snails receiving CLE-supplemented diets. After a 14-day period of infection, snails that consumed a diet supplemented with 3–4 g/kg of CLE exhibited a notable increase in survival rates against virulent A. hydrophila. Based on the above findings, it is suggested that a diet supplemented with 3 g/kg of CLE may enhance growth, antioxidant and immune defense, and disease resistance in the freshwater snail B. bengalensis. Full article
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21 pages, 2422 KB  
Article
Genome-Resolved Co-Infection by Aeromonas veronii and Shewanella sp. in Koi Carp: A Zoonotic Risk for Aquarists
by Gorkem Tasci, Nihed Ajmi, Soner Altun, Izzet Burcin Saticioglu and Muhammed Duman
Microorganisms 2026, 14(1), 36; https://doi.org/10.3390/microorganisms14010036 - 23 Dec 2025
Viewed by 916
Abstract
Co-infections are increasingly recognized as drivers of disease in ornamental fish, yet their genomic underpinnings and zoonotic implications remain underexplored compared to farmed species. Leveraging a One Health perspective, we investigated an acute mortality event in koi carp and characterized a co-infection by [...] Read more.
Co-infections are increasingly recognized as drivers of disease in ornamental fish, yet their genomic underpinnings and zoonotic implications remain underexplored compared to farmed species. Leveraging a One Health perspective, we investigated an acute mortality event in koi carp and characterized a co-infection by opportunistic aquatic bacteria that are also implicated in human disease. We isolated Aeromonas veronii and Shewanella sp. from a moribund koi using culture, biochemical assays, and MALDI-TOF MS, then generated draft genomes and performed orthology (OrthoVenn3), pathway annotation (KEGG BlastKOALA/Mapper), secondary-metabolite mining (antiSMASH), and virulence/resistome screening (VFDB/CARD), complemented by antimicrobial susceptibility testing. Clinically, affected fish showed dropsy/ascites, scale loss, abnormal buoyancy, and reduced activity. Phylogenomics positioned A. veronii Koi-2 within the A. veronii complex near species thresholds (ANI ~96.1%; dDDH ~70.2%), while Shewanella sp. Koi-1 formed a distinct lineage below accepted cut-offs relative to S. seohaensis (ANI ~95.9%; dDDH ~67.6%). The virulome comprised 194 loci in A. veronii Koi-2 and 152 in Shewanella sp. Koi-1 is enriched for adhesion, secretion, iron uptake, and immune-evasion functions. Genotype–phenotype agreement was high for multidrug resistance: Shewanella sp. encoded OXA-436 and rsmA, matching β-lactam resistance and reduced fluoroquinolone/phenicol susceptibility, whereas A. veronii carried tet(A), OXA-1157, cphA3, sul1, and aadA3 consistent with tetracycline, β-lactam, sulfonamide, and aminoglycoside resistance profiles. In conclusion, genome-resolved diagnostics confirmed a mixed Aeromonas–Shewanella co-infection with broad virulence potential and convergent resistance mechanisms, supporting the routine use of genomics to distinguish single- versus mixed-agent disease and to guide dual-coverage, mechanism-aware therapy in ornamental fish medicine while informing zoonotic risk mitigation. Full article
(This article belongs to the Special Issue Research on Diseases of Aquatic Organisms)
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1 pages, 160 KB  
Correction
Correction: Silva et al. How Does Food Enrichment and the Presence of Visitors Affect the Behaviour of Two Species of Freshwater Fish in a Public Aquarium? J. Zool. Bot. Gard. 2025, 6, 35
by Arthur Afeitos Silva, Cristiano Schetini de Azevedo, Cynthia Fernandes Cipreste, Cristiane Schilbach Pizzutto and Eneida Maria Eskinazi Sant’Anna
J. Zool. Bot. Gard. 2025, 6(4), 52; https://doi.org/10.3390/jzbg6040052 - 13 Oct 2025
Viewed by 511
Abstract
In the original publication [...] Full article
10 pages, 1200 KB  
Article
Estimating Whale Shark, Rhincodon typus, Length Using Multi-Stereo-Image Measurement
by Hiroto Yamamoto, Akira Sasaki, Tomoki Kanna, Yasushi Mitsunaga and Shinsuke Torisawa
Fishes 2025, 10(10), 513; https://doi.org/10.3390/fishes10100513 - 10 Oct 2025
Viewed by 1630
Abstract
The whale shark Rhincodon typus is the largest known extant omnivorous fish species, reaching up to 17 m in length. Because of its slow growth and late maturity, R. typus is particularly vulnerable to human activities and is listed as endangered on the [...] Read more.
The whale shark Rhincodon typus is the largest known extant omnivorous fish species, reaching up to 17 m in length. Because of its slow growth and late maturity, R. typus is particularly vulnerable to human activities and is listed as endangered on the IUCN Red List. Understanding its biological characteristics, such as growth rate, is essential for their conservation. Non-invasive methods, including stereo-image measurements, have been used to measure the body length of the species over the years, which aggregates in coastal areas during specific life stages. This method enables us to estimate fish length by recording the target using a stereo camera, which commonly consists of two cameras. However, measurement errors increase in the setup as the target moves away from the camera. Therefore, we conducted a multi-stereo video shoot of a free-swimming whale shark in an aquarium tank and compared the performance of stereo cameras using two, three, and four cameras. The setups with three and four cameras outperformed the traditional two-camera stereo setup in terms of precision and accuracy, suggesting that a multi-stereo camera system can effectively estimate the body length of large animals such as whale sharks from a considerable distance. Full article
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20 pages, 1418 KB  
Article
Refining Larval Culture Protocols of Clownfish (Amphiprion ocellaris) to Reduce the Use of Live Feeds
by Casey A. Murray, Brittney D. Lacy, Olivia I. Markham and Matthew A. DiMaggio
Fishes 2025, 10(9), 461; https://doi.org/10.3390/fishes10090461 - 13 Sep 2025
Cited by 1 | Viewed by 2556
Abstract
Clownfish (Amphiprion ocellaris) are a staple commodity in the marine aquarium trade and an emerging model organism for research. Bottlenecks during larviculture affect the survival of juvenile fish and continued reliance on live feeds, such as rotifers (Brachionus spp.) and [...] Read more.
Clownfish (Amphiprion ocellaris) are a staple commodity in the marine aquarium trade and an emerging model organism for research. Bottlenecks during larviculture affect the survival of juvenile fish and continued reliance on live feeds, such as rotifers (Brachionus spp.) and Artemia spp. nauplii, increasing the complexity and cost of raising this species. This study utilized known digestive physiology of clownfish larvae to experimentally reduce the use of live feeds. First, larvae were weaned from rotifers to Artemia at three time points (3, 5, and 7 days post-hatch [DPH]), demonstrating that larvae can be transitioned to Artemia as early as 5 DPH without negative impacts on survival, total length (TL), or whole-body cortisol. A second weaning trial tested the introduction of a commercial microdiet (MD) at 5, 8, and 11 DPH. Survival was greatest when the MD was introduced at 5 DPH (mean ± SD; 64.47 ± 0.10%), and no differences in TL nor whole-body cortisol were detected, suggesting that Artemia may not be required prior to MD weaning. Next, three commercially available MDs were tested for their effects on survival, growth, and coloration of clownfish larvae. Survival and growth did not differ among diets, but fish fed TDO Chroma Boost™ exhibited significantly red-shifted hues, higher saturation, and greater brightness scores in some body regions compared to fish fed Golden Pearl or GEMMA Micro 300. A partial budget analysis indicated a net profit increase of ~$1.60 per fish, highlighting the potential for cost savings and streamlined clownfish production. Full article
(This article belongs to the Special Issue Intestinal Health of Aquatic Organisms)
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