Search Results (12)

In a warming climate, rising temperature are expected to influence atmospheric humidity. This study examined the spatio-temporal dynamics of temperature (TEMP) and relative humidity (RH) across Equatorial Africa from 1980 to 2020. The analysis used RH data from European Centre of Medium-range Weather Forecasts Reanalysis v.5 (ERA5) reanalysis, TEMP and precipitation (PRE) from Climate Research Unit (CRU), and soil moisture (SM) and evapotranspiration (ET) from the Global Land Evaporation Amsterdam Model (GLEAM). In addition, four teleconnection indices were considered: El Niño-Southern Oscillation (ENSO), Indian Ocean Dipole (IOD), North Atlantic Oscillation (NAO), and Pacific Decadal Oscillation (PDO). This study used the Mann–Kendall test and Sen’s slope estimator to analyze trends, alongside multiple linear regression to investigate the relationships between TEMP, RH, and key climatic variables—namely evapotranspiration (ET), soil moisture (SM), and precipitation (PRE)—as well as large-scale teleconnection indices (e.g., IOD, ENSO, PDO, and NAO) on annual and seasonal scales. The key findings are as follows: (1) mean annual TEMP exceeding 30 °C and RH less than 30% were concentrated in arid regions of the Sahelian–Sudano belt in West Africa (WAF), Central Africa (CAF) and North East Africa (NEAF). Semi-arid regions in the Sahelian–Guinean belt recorded moderate TEMP (25–30 °C) and RH (30–60%), while the Guinean coastal belt and Congo Basin experienced cooler, more humid conditions (TEMP < 20 °C, RH (60–90%). (2) Trend analysis using Mann–Kendal and Sen slope estimator analysis revealed spatial heterogeneity, with increasing TEMP and deceasing RH trends varying by region and season. (3) The warming rate was higher in arid and semi-arid areas, with seasonal rates exceeding annual averages (0.18 °C decade⁻¹). Winter (0.27 °C decade⁻¹) and spring (0.20 °C decade⁻¹) exhibited the strongest warming, followed by autumn (0.18 °C decade⁻¹) and summer (0.10 °C decade⁻¹). (4) RH trends showed stronger seasonal decline compared to annual changes, with reduction ranging from 5 to 10% per decade in certain seasons, and about 2% per decade annually. (5) Pearson correlation analysis demonstrated a strong negative relationship between TEMP and RH with a correlation coefficient of r = − 0.60. (6) Significant associations were also observed between TEMP/RH and both climatic variables (ET, SM, PRE) and large scale-teleconnection indices (ENSO, IOD, PDO, NAO), indicating that surface conditions may reflect a combination of local response and remote climate influences. However, further analysis is needed to distinguish the extent to which local variability is independently driven versus being a response to large-scale forcing. Overall, this research highlights the physical mechanism linking TEMP and RH trends and their climatic drivers, offering insights into how these changes may impact different ecological and socio-economic sectors. Full article

Human monkeypox (Mpox) is a zoonotic disease caused by the Monkeypox virus (MPXV). As of 14 August 2024, the World Health Organization (WHO) has declared it a global health emergency. For Mpox, this was the second public health emergency of global significance in the past two years. MPXV belongs to the Poxviridae family and is phylogenetically and epidemically divided into two clades: the Congo Basin (Clade-I) and the West African (Clade-II) clades. Clade-I has been associated with more severe disease progression and higher mortality compared to Clade-II, and thus the differentiation between clades can play an important role in predicting disease prognosis. The LAMP technique has the advantages of not requiring thermal cycling and achieving higher amplification in a shorter time compared to qPCR. Different types of LAMP assays were developed in this study to benefit from these advantages. We report the development of LAMP-1 and LAMP-2 assays using the LAMP method to detect MPXV Clade-I and Clade-II, respectively. The LAMP-1 assay includes both fluorescence and visible colorimetric readout tests developed with sensitivities of 10³ and 10⁷ copies, respectively. For the LAMP-2 assay, a probe-based test utilizing the Novel R-Duplex DARQ probe was developed, offering fluorescence detection at a sensitivity of 10³ copies. As a result, we successfully developed three highly specific molecular diagnostic tests that distinctly differentiate between MPXV clades, delivering essential tools for the precise diagnosis and effective control of Mpox. Full article

Complex Neoproterozoic tectonic processes greatly affected the West Congo Basin, resulting in a series of dispersed copper deposits in the Niari Sub-basin, Republic of the Congo. Structural observation and analysis can help in understanding both the transportation pathways for copper accumulation and the detailed tectonic evolution processes. This study examines cases from four copper mine sites in the Luangu region of the Niari Basin, using a set of codes that consider the three regional tectonic regimes (extension, extrusion, and contraction) and three deformation criteria (maximum effective moment criterion, tensile fracture criterion, and the Coulomb criterion). By combining these two aspects, nine new codes are introduced: the extension maximum effective moment criterion (EM), extension tensile fracture criterion (ET), extension Coulomb criterion (EC), strike-slip maximum effective moment criterion (SM), strike-slip tensile fracture criterion (ST), strike-slip Coulomb criterion (SC), compression maximum effective moment criterion (CM), compression tensile fracture criterion (CT), and compression Coulomb criterion (CC). By analyzing and applying these codes to the selected sites, we show that the new codes can present a geometric coordination catering to an exhumation-related inversion process from extension, strike-slipping, to contraction. The existence of SM- and CM-related structures that occurred during regional extrusional and contractional events may indicate a deeper level of exhumation for layers related to copper deposits in the field sites. A new tectonic evolution model is presented, considering the hypothesis of vertical principal stress changes while the two horizontal principal stresses remain relatively constant during copper mineralization affected by the Western Congo Orogen. The application of the nine codes facilitates the determination of interrelations between different tectonic regimes. Full article

A synthesis of the evolution of the Neoproterozoic belts or orogens surrounding the São Francisco craton (SFC) in northeastern and southeastern Brazil is presented. Emphasis is placed on recognizing the superposition of sedimentary basins, from rift to passive margin to retroarc and foreland, as well as identifying three diachronic continental collisions in the formation of the SFC. The Tonian passive margin occurs in the southern Brasília Belt with the Vazante, Canastra, and Araxá Groups. During the Tonian, island magmatic arcs and basins developed in front and behind these arcs (fore- and back-arcs). Subsequently, in the Cryogenian–Ediacaran, a retroarc foreland basin developed with part of the Araxá Group and the Ibiá Group, and finally, a foreland basin developed, which was filled by the Bambuí Group. A tectonic structure of superimposed nappes, with subhorizontal S_1–2 foliation, formed between 650 and 610 Ma, is striking. In the northern Brasília Belt, there is the Stenian passive margin of the Paranoá Group, the Tonian intrusion of the Mafic–Ultramafic Complexes, and the Mara Rosa Island magmatic arc, active since the Tonian, with limited volcanic–sedimentary basins associated with the arc. A thrust–fold belt structure is prominent, with S1 foliation and late transcurrent, transpressive tectonics characterized by the Transbrasiliano (TB) lineament. The Cryogenian–Ediacaran collision between the Paranapanema and São Francisco cratons is the first collisional orogenic event to the west. In the Rio Preto belt, on the northwestern margin of the São Francisco craton, the Cryogenian–Ediacaran Canabravinha rift basin is prominent, with gravitational sediments that represent the intracontinental termination of the passive margin that occurs further northeast. The rift basin was intensely deformed at the Ediacaran–Cambrian boundary, as was the Bambuí Group. On the northern and northeastern margins of the São Francisco craton, the Riacho do Pontal and Sergipano orogens stand out, showing a comparable evolution with Tonian and Cryogenian rifts (Brejo Seco, Miaba, and Canindé); Cryogenian–Ediacaran passive margin, where the Monte Orebe ophiolite is located; and Cordilleran magmatic arcs, which developed between 620 and 610 Ma. In the Sergipano fold belt, with a better-preserved outer domain, gravitational sedimentation occurs with glacial influence. A continental collision between the SFC and the PEAL (Pernambuco-Alagoas Massif) occurred between 610 and 540 Ma, with intense deformation of nappes and thrusts, with vergence to the south and accommodation by dextral transcurrent shear zones, such as the Pernambuco Lineament (PE). The Araçuaí belt or orogen was formed at the southeastern limit of the SFC by a Tonian intracontinental rift, later superimposed by a Cryogenian–Ediacaran rift–passive margin of the Macaúbas Group, with gravitational sedimentation and glacial influence, and distally by oceanic crust. It is overlain by a retroarc basin with syn-orogenic sedimentation of the Salinas Formation, partly derived from the Rio Doce cordilleran magmatic arc and associated basins, such as the Rio Doce and Nova Venécia Groups. A third continental collision event (SF and Congo cratons), at the end of the Ediacaran (580–530 Ma), developed a thrust–fold belt that deforms the sediments of the Araçuaí Belt and penetrates the Paramirim Corridor, transitioning to the south to a dextral strike-slip shear zone that characterizes the Ribeira Belt. Full article

In African countries where mpox (monkeypox) is endemic, infection is caused by two genetically related clades—Clade I (formerly Congo Basin), and Clade IIa (formerly West Africa), both of which are potentially life-threatening infections. Prior to the 2022–2023 global outbreak, mpox infections among pregnant women caused by Clade I were reported to have a 75% perinatal case fatality rate in the Democratic Republic of Congo, including the only documented case of placental infection and stillbirth from the Congenital Mpox Syndrome, and the Clade IIa mpox infection was associated with stillbirths in Nigeria. The 2022–2023 global mpox outbreak, caused by a genetically distinct strain, Clade IIb, has focused attention on the effects of mpox on pregnant women and fetal outcomes. There have been at least 58 cases of mpox infection occurring in pregnant women during the 2022–2023 outbreak. No confirmed cases of adverse perinatal outcome, including stillbirth, have been reported. The absence of perinatal morbidity and mortality from Clade IIb corresponds to the overall case fatality rate among non-pregnant women of <0.1%, as this clade has been demonstrated to produce a less-severe disease than the mpox Clade I or IIa variants. Thus, there are apparently important differences between mpox clades affecting pregnant women and perinatal outcomes. Full article

Background: Monkeypox virus (MPXV) is a double-stranded DNA virus belonging to the orthopoxvirus genus in the family Poxviridae. Distinct clades are identified: the clade I belonging to the Central African (or Congo Basin) clade and the subclades IIa and IIb belonging to the West African clade. Here, a commercial droplet digital PCR (ddPCR) assay was evaluated for the quantification of the MPXV West Africa clade in clinical samples. Methods: The ddPCR reaction was assessed as a duplex assay using RPP30 as an internal amplification control. A total of 60 clinical specimens were tested, 40 positives (skin lesions, n=10; rectal swabs, n = 10; pharyngeal swabs, n = 10; and whole blood, n = 10), and 20 negatives (n = 5 for each biological matrix) were found at the routine molecular diagnostics (orthopoxvirus qPCR followed by confirmation with Sanger sequencing). To evaluate the analytical sensitivity, the ddPCR reaction was first analyzed on serial dilutions of synthetic DNA spiked in water and in negative biological matrices, achieving a limit of detection of 3.5 copy/µL. Results: Regarding the clinical samples, compared to routine molecular diagnostics, the ddPCR duplex assay showed 100% of specificity for all biological matrices and 100% sensitivity (10/10) for lesions, 100% (10/10) for rectal swabs, 90% (9/10) for pharyngeal swabs, and 60% (6/10) for whole blood. Conclusion: Overall, our data showed that the commercial ddPCR assay allowed the DNA detection of MPXV in 87.5% (35/40) of our cohort, highlighting useful technical indications for the different specimens with a potential greatest performance for skin lesions and rectal swabs. Full article

The pre- to post-Late Neoproterozoic geological histories in the south to southwestern part of Mamfe Basin (SW Cameroon) were reported following analysis of the zircon crystals from their host rocks. A genetic model was developed for the zircon host rocks’ formation conditions, and the registered post-emplacement events were presented. The obtained ages were correlated with the data available for rocks in the Cameroon Mobile Belt, SE Nigeria, and the Borborema Province of NE Brazil. Separated zircons from Araru black to whitish gneiss, Araru whitish-grey gneiss, and Mboifong migmatite were analyzed for their morphology and texture U-Th-Pb composition, and U-Pb ages. Published U-Pb zircon ages for Otu granitic pegmatite, Babi mica schist, and Nkogho I-type anatectic granite were updated. Zircon ages in Araru black to whitish gneiss; Araru whitish-grey, Mboifong migmatite, Babi mica schist, Nkogho I-type anatectic granite, and Otu granitic pegmatite date the Eburnean tectono-magmatic/metamorphic event in Cameroon and SE Nigeria. The Late Paleoproterozoic to Early Mesoproterozoic ages record extensional (continental rift) settings and anorogenic magmatism in the Borborema Province in the NE of Brazil. These ages date collisional phases between the São Francisco–Congo and West African cratons and the Saharan metacraton with metamorphism and magmatism in Cameroon. They also date the Kibarian tectono-magmatic/metamorphism and PanAfrican tectono-magmatic/metamorphism in SE Nigeria. The Late Paleoproterozoic to Early Mesoproterozoic ages date the Cariris Velhos orogeny in the Borborema Province in NE Brazil, with Early Tonian crustal rifting, magmatism, and metamorphism and the collisional phase of the Brasiliano orogeny with syn-collisional plutons and extensive shear zoning and post-collisional granite intrusions. Full article

The present study is the first modeling effort at a global scale to predict habitat suitability of fall armyworm (FAW), Spodoptera frugiperda and its key parasitoids, namely Chelonus insularis, Cotesia marginiventris,Eiphosoma laphygmae,Telenomus remus and Trichogramma pretiosum, to be considered for biological control. An adjusted procedure of a machine-learning algorithm, the maximum entropy (Maxent), was applied for the modeling experiments. Model predictions showed particularly high establishment potential of the five hymenopteran parasitoids in areas that are heavily affected by FAW (like the coastal belt of West Africa from Côte d’Ivoire (Ivory Coast) to Nigeria, the Congo basin to Eastern Africa, Eastern, Southern and Southeastern Asia and some portions of Eastern Australia) and those of potential invasion risks (western & southern Europe). These habitats can be priority sites for scaling FAW biocontrol efforts. In the context of global warming and the event of accidental FAW introduction, warmer parts of Europe are at high risk. The effect of winter on the survival and life cycle of the pest in Europe and other temperate regions of the world are discussed in this paper. Overall, the models provide pioneering information to guide decision making for biological-based medium and long-term management of FAW across the globe. Full article

Agro-industrial oil palm plantations are becoming increasingly established in the Congo Basin (West Equatorial Africa) for mainly economic reasons. Knowledge of oil palm capacity to sequester carbon requires biomass estimates. This study implemented local and regional methods for estimating palm biomass in a mature plantation, using destructive sampling. Eighteen 35-year-old oil palms with breast height diameters (DBH) between 48 and 58 cm were felled and sectioned in a plantation located in Makouké, central Gabon. Field and laboratory measurements determined the biomasses of different tree compartments (fruits, leaflets, petioles, rachises, stems). Fruits and leaflets contributed an average of 6% to total aboveground palm biomass, which petioles accounted for 8%, rachises for 13% and the stem, 73%. The best allometric equation for estimating stem biomass was obtained with a composite variable, formulated as DBH² × stem height, weighted by tissue infra-density. For leaf biomass (fruits + leaflets + petioles + rachises), the equation was of a similar form, but included the leaf number instead of infra-density. The allometric model combining the stem and leaf biomass yielded the best estimates of the total aboveground oil palm biomass (coefficient of determination (r²) = 0.972, p < 0.0001, relative root mean square error (RMSE) = 5%). Yet, the model was difficult to implement in practice, given the limited availability of variables such as the leaf number. The total aboveground biomass could be estimated with comparable results using DBH² × stem height, weighted by the infra-density (r² = 0.961, p < 0.0001, relative RMSE (%RMSE) = 5.7%). A simpler model excluding infra-density did not severely compromise results (R² = 0.939, p < 0.0003, %RMSE = 8.2%). We also examined existing allometric models, established elsewhere in the world, for estimating aboveground oil palm biomass in our study area. These models exhibited performances inferior to the best local allometric equations that were developed. Full article

Annotated whole genome sequences of three isolates of the Akhmeta virus (AKMV), a novel species of orthopoxvirus (OPXV), isolated from the Akhmeta and Vani regions of the country Georgia, are presented and discussed. The AKMV genome is similar in genomic content and structure to that of the cowpox virus (CPXV), but a lower sequence identity was found between AKMV and Old World OPXVs than between other known species of Old World OPXVs. Phylogenetic analysis showed that AKMV diverged prior to other Old World OPXV. AKMV isolates formed a monophyletic clade in the OPXV phylogeny, yet the sequence variability between AKMV isolates was higher than between the monkeypox virus strains in the Congo basin and West Africa. An AKMV isolate from Vani contained approximately six kb sequence in the left terminal region that shared a higher similarity with CPXV than with other AKMV isolates, whereas the rest of the genome was most similar to AKMV, suggesting recombination between AKMV and CPXV in a region containing several host range and virulence genes. Full article

The zoonosis human monkeypox (MPX) was discovered in 1970, twelve years after the discovery of monkeypox virus (MPXV) in a Danish laboratory in 1958. Historically confined to West Africa (WA) and the Congo basin (CB), new epidemics in Sudan and the United States of America (USA) have fuelled new research highlighting environmental factors contributing to the expanded geographical spread of monkeypox virus (MPXV). A systematic literature review was conducted in MEDLINE^® (Ovid), MEDLINE^® (PubMed) and Google Scholar databases using the search terms: monkeypox, MPXV and “human monkeypox”. The literature revealed MPX has classic prodromal symptoms followed by a total body rash. The sole distinguishing clinical characteristic from other pox-like illnesses is the profound lymphadenopathy. Laboratory diagnosis of MPX is essential, a suitable test for endemic areas is under development but not yet available. For the time being anti-poxvirus antibodies in an unvaccinated individual with a history of severe illness and rash can suggest MPX infection. The reservoir host remains elusive yet the rope squirrel and Gambian pouched rat appear to be the most likely candidates. Transmission includes fomite, droplet, direct contact with infected humans or animals and consumption of infected meat. Though smallpox vaccination is protective against MPXV, new non-immune generations contribute to increasing incidence. Environmental factors are increasing the frequency of contact with potential hosts, thus increasing the risk of animal-to-human transmission. Increased risk of transmission through globalisation, conflict and environmental influences makes MPX a more realistic threat to previously unaffected countries. Health worker training and further development and accessibility of suitable diagnostic tests, vaccinations and anti-viral treatment is becoming increasingly necessary. Full article

Monkeypox is a zoonotic disease caused by a virus member of the genus Orthopoxvirus and is endemic to Central and Western African countries. Previous work has identified two geographically disjuct clades of monkeypox virus based on the analysis of a few genomes coupled with epidemiological and clinical analyses; however, environmental and geographic causes of this differentiation have not been explored. Here, we expand previous phylogenetic studies by analyzing a larger set of monkeypox virus genomes originating throughout Sub-Saharan Africa to identify possible biogeographic barriers associated with genetic differentiation; and projected ecological niche models onto environmental conditions at three periods in the past to explore the potential role of climate oscillations in the evolution of the two primary clades. Analyses supported the separation of the Congo Basin and West Africa clades; the Congo Basin clade shows much shorter branches, which likely indicate a more recent diversification of isolates within this clade. The area between the Sanaga and Cross Rivers divides the two clades and the Dahomey Gap seems to have also served as a barrier within the West African clade. Contraction of areas with suitable environments for monkeypox virus during the Last Glacial Maximum, suggests that the Congo Basin clade of monkeypox virus experienced a severe bottleneck and has since expanded its geographic range. Full article