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Keywords = Sus scrofa domestica

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11 pages, 1188 KiB  
Article
Assessment of Body Morphometry to Classify Two Colombian Creole Pigs Using Statistical and Machine Learning Methods
by Arcesio Salamanca-Carreño, Mauricio Vélez-Terranova, Pere M. Parés-Casanova, Paula A. Toalombo-Vargas, David E. Rangel-Pachón and Andrés F. Castillo-Pérez
Life 2025, 15(5), 693; https://doi.org/10.3390/life15050693 - 24 Apr 2025
Viewed by 972
Abstract
Creole pigs (Sus scrofa domestica), descendants of Iberian breeds, possess significant genetic and cultural importance but are under-researched and at risk due to the dominance of improved breeds for commercial production. The aim of this study was to identify the most [...] Read more.
Creole pigs (Sus scrofa domestica), descendants of Iberian breeds, possess significant genetic and cultural importance but are under-researched and at risk due to the dominance of improved breeds for commercial production. The aim of this study was to identify the most representative body morphometric measurements for the differentiation of two Creole pig breeds, using statistical and machine learning methods. A sample of “Casco de Mula” (n = 54) and San Pedreño (n = 30) Creole pigs, aged between 2 and 6 months, belonging to seven traditional farms located in the department of Meta (Colombia), was studied. A total of 14 morphometric variables were recorded, as well as the animal’s sex. Four algorithms—linear discriminant analysis, quadratic discriminant analysis, logistic regression, and classification trees—were used to classify the breeds. The results indicated that head width, height at the withers, and right ear length measurements could be used to differentiate the “Casco de Mula” and San Pedreño Creole pigs. The decision tree was the most accurate algorithm (accuracy = 92%, sensitivity = 96%, specificity = 83%, and Matthews correlation coefficient = 0.82), and its performance can be improved by increasing the number of animals. Non-parametric supervised learning methods like decision trees can be used to morphometrically differentiate Creole pigs raised in the same or different environments in order to characterize animal genetic resources. Full article
(This article belongs to the Special Issue Feature Papers in Animal Science: 4th Edition)
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26 pages, 3246 KiB  
Article
Morphological, Histological and Morphometrical Aspects of Auditory Ossicles in Pig Fetuses (Sus scrofa domestica)
by Cristian Olimpiu Martonos, Pompei Bolfa, Andras-Laszlo Nagy, David Hilchie, William Brady Little, Cristian Constantin Dezdrobitu and Alexandru Ion Gudea
Animals 2025, 15(8), 1129; https://doi.org/10.3390/ani15081129 - 14 Apr 2025
Viewed by 1824
Abstract
The detailed study of the morphology and morphometrics of the auditory ossicles in swine became a topic for investigation due to their resemblance to the human ear. The methods used in this study cover the typical macroscopical investigation of gross morphology: a detailed [...] Read more.
The detailed study of the morphology and morphometrics of the auditory ossicles in swine became a topic for investigation due to their resemblance to the human ear. The methods used in this study cover the typical macroscopical investigation of gross morphology: a detailed metrical and histological assessment through H&E standard protocol on auditory ossicles originating from eight pig fetuses originating from four distinctive sows. The ossicular assembly in the malleus, incus and stapes present in 66-day fetuses shows all the features generally described in swine. The malleus comprises two uneven laminae of mineralized hyaline cartilage and a medullary cavity. The areas of the head and neck show a high degree of vascularization. The incus has two similar cortical fascicles separated by a compartmentalized medullary cavity, with the highest degree of mineralization found at the distal part of the long process. Stapes show an early degree of mineralization at the level of the crura, lacking medullary cavities. The ossicular chain shows typical morphological elements, similar to adults, and from a dimensional perspective, our investigations point to an uneven degree of development of the ossicles, according to gestational age: the malleus and stapes reach almost 80% and the incus about 50–60% of their adult sizes. Full article
(This article belongs to the Section Mammals)
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30 pages, 1208 KiB  
Review
Native Pig Breeds as a Source of Biodiversity—Breeding and Economic Aspects
by Anna Kasprzyk and Alina Walenia
Agriculture 2023, 13(8), 1528; https://doi.org/10.3390/agriculture13081528 - 31 Jul 2023
Cited by 14 | Viewed by 7662
Abstract
The purpose of this paper is to summarize the available important information on local pig breeds maintained in Europe. Genetic erosion has prompted national and international bodies to take organized action aimed at the minimization of further losses of biodiversity. Since the genetic [...] Read more.
The purpose of this paper is to summarize the available important information on local pig breeds maintained in Europe. Genetic erosion has prompted national and international bodies to take organized action aimed at the minimization of further losses of biodiversity. Since the genetic resources of livestock ensure both food security and the sustainable development of rural areas, genetic diversity is indispensable for sufficient flexibility of future animal husbandry to adapt to changing consumer demands and climatic conditions. Therefore, the problem of biodiversity has recently become an essential part of the comprehensive international program of the World Conservation Strategy and the global idea of the so-called sustainable development. The issue of biodiversity protection occupies an important place in the provisions of the EU Common Agricultural Policy. The successive financial perspectives assume an increase in relevant expenditure from the EU and national budgets. With regard to the protection of native pig breeds, a particularly large increase in funding was recorded in 2014–2020. Full article
(This article belongs to the Special Issue Research Progress in Pig Genetics, Breeding and Reproduction)
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9 pages, 1347 KiB  
Article
Potential of Bacterial Cellulose in Reconstructive Surgery of Body Integumentary System: Preliminary Studies in Animals
by Agata Błażyńska-Spychalska, Martyna Kur, Tomasz Brzeski, Wacław Zając, Teresa Pankiewicz, Stanisław Bielecki, Jarosław Woliński and Jerzy Jankau
J. Funct. Biomater. 2023, 14(8), 397; https://doi.org/10.3390/jfb14080397 - 26 Jul 2023
Cited by 3 | Viewed by 1674
Abstract
The aim of the study is to present the preliminary results of the in vivo application of Komagataeibacter xylinum E25 bacterial cellulose (BC) as a replacement material for produced defects during operations. Three pigs (sus scrofa domestica) had the same defects in the [...] Read more.
The aim of the study is to present the preliminary results of the in vivo application of Komagataeibacter xylinum E25 bacterial cellulose (BC) as a replacement material for produced defects during operations. Three pigs (sus scrofa domestica) had the same defects in the ear cartilage (4 × 4 cm) and in the rectus abdominis muscle (6 × 10 cm) with BC membranes implanted into them. The time of observation of the condition of the animals was 3 months. Implantation sites did not show clinical signs of complications in the form of inflammation or necrosis. Histologically, a normal scar was produced as a result of the material healing into the host’s body. In one case, no residual implant material was found at the site of implantation, and the remodeled scar confirmed healing. No systemic inflammatory reaction was observed in any of the animals. The host organism’s reaction to the bacterial cellulose allows us to believe that it meets the expectations as a material that can be widely used in reconstructive surgery. Nevertheless, this requires further research on a larger group and also using other foreign bodies. The next step would be an experiment on a group consisting of people. Full article
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18 pages, 4186 KiB  
Article
Effect of Er:YAG Laser Exposure on the Amorphous Smear Layer in the Marginal Zone of the Osteotomy Site for Placement of Dental Screw Implants: A Histomorphological Study
by Nikolay Kanazirski, Diyana Vladova, Deyan Neychev, Ralitsa Raycheva and Petya Kanazirska
J. Funct. Biomater. 2023, 14(7), 376; https://doi.org/10.3390/jfb14070376 - 18 Jul 2023
Cited by 8 | Viewed by 2977
Abstract
The placement of dental screw implants typically involves the use of rotary techniques and drills to create a bone bed. This study explores the potential benefits of combining this method with an Er:YAG laser. Split osteotomies were performed on 10 jaws of euthanized [...] Read more.
The placement of dental screw implants typically involves the use of rotary techniques and drills to create a bone bed. This study explores the potential benefits of combining this method with an Er:YAG laser. Split osteotomies were performed on 10 jaws of euthanized domestic pigs (Sus scrofa domestica), with 12 mandibular implant osteotomies in each jaw, divided into 4 groups. In order to make a comprehensive assessment of the effect of Er:YAG lasers, histomorphological techniques were used to measure the reduction in amorphous layer thickness after Er:YAG laser treatment, both with and without the placement of dental screw implants from different manufacturers. Following bone decalcification and staining, the thickness of the amorphous layer was measured in four groups: Group A—osteotomy performed without Er:YAG laser treatment—had amorphous layer thicknesses ranging from 21.813 to 222.13 µm; Group B—osteotomy performed with Er:YAG laser treatment—had amorphous layer thicknesses ranging from 6.08 to 64.64 µm; Group C—an implant placed in the bone without laser treatment—had amorphous layer thicknesses of 5.90 to 54.52 µm; and Group D—an implant placed after bone treatment with Er:YAG laser—had amorphous layer thicknesses of 1.29 to 7.98 µm. The examination and photomicrodocumentation was performed using a LEICA DM1000 LED microscope (Germany) and LAS V 4.8 software (Leica Application Suite V4, Leica Microsystems, Germany). When comparing group A to group B and group C to D, statistically significant differences were indicated (p-value = 0.000, p < 0.05). The study demonstrates the synergistic effects and the possibility of integrating lasers into the conventional implantation protocol. By applying our own method of biomodification, the smear layer formed during rotary osteotomy can be reduced using Er:YAG lasers. This reduction leads to a narrower peri-implant space and improved bone-to-implant contact, facilitating accelerated osseointegration. Full article
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38 pages, 10478 KiB  
Article
Adaptation of the Porcine Pituitary Transcriptome, Spliceosome and Editome during Early Pregnancy
by Karol G. Makowczenko, Jan P. Jastrzebski, Marta Kiezun, Lukasz Paukszto, Kamil Dobrzyn, Nina Smolinska and Tadeusz Kaminski
Int. J. Mol. Sci. 2023, 24(6), 5946; https://doi.org/10.3390/ijms24065946 - 21 Mar 2023
Cited by 4 | Viewed by 3495
Abstract
The physiological mechanisms of the porcine reproduction are relatively well-known. However, transcriptomic changes and the mechanisms accompanying transcription and translation processes in various reproductive organs, as well as their dependence on hormonal status, are still poorly understood. The aim of this study was [...] Read more.
The physiological mechanisms of the porcine reproduction are relatively well-known. However, transcriptomic changes and the mechanisms accompanying transcription and translation processes in various reproductive organs, as well as their dependence on hormonal status, are still poorly understood. The aim of this study was to gain a principal understanding of alterations within the transcriptome, spliceosome and editome occurring in the pituitary of the domestic pig (Sus scrofa domestica L.), which controls basic physiological processes in the reproductive system. In this investigation, we performed extensive analyses of data obtained by high-throughput sequencing of RNA from the gilts’ pituitary anterior lobes during embryo implantation and the mid-luteal phase of the estrous cycle. During analyses, we obtained detailed information on expression changes of 147 genes and 43 long noncoding RNAs, observed 784 alternative splicing events and also found the occurrence of 8729 allele-specific expression sites and 122 RNA editing events. The expression profiles of the selected 16 phenomena were confirmed by PCR or qPCR techniques. As a final result of functional meta-analysis, we acquired knowledge regarding intracellular pathways that induce changes in the processes accompanying transcription and translation regulation, which may induce modifications in the secretory activity of the porcine adenohypophyseal cells. Full article
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18 pages, 3127 KiB  
Article
A Biocultural Study on Gaoligongshan Pig (Sus scrofa domesticus), an Important Hog Landrace, in Nujiang Prefecture of China
by Yanan Chu, Chen Lin, Zhuo Cheng, Xingcen Zhao, Yanxiao Fan, Binsheng Luo and Chunlin Long
Biology 2022, 11(11), 1603; https://doi.org/10.3390/biology11111603 - 2 Nov 2022
Cited by 4 | Viewed by 2411
Abstract
Over 80% proteins consumed by the local people in Nujiang Prefecture of Southwest China, a remote and mountainous area in the Eastern Himalayas, are from pork, or Gaoligongshan pig (a landrace of Sus scrofa domestica Brisson). Previous research on the Gaoligongshan pig has [...] Read more.
Over 80% proteins consumed by the local people in Nujiang Prefecture of Southwest China, a remote and mountainous area in the Eastern Himalayas, are from pork, or Gaoligongshan pig (a landrace of Sus scrofa domestica Brisson). Previous research on the Gaoligongshan pig has focused on nutritional composition, production performance, and genetic resource characteristics, but neglected the reasons behind the local people’s practice. From 2019 to 2022, we have used ethnobiological research methods to comprehensively document the traditional rearing and management patterns and the traditional culture associated with Gaoligongshan pigs. The results show that Gaoligongshan pigs graze in mixed herds with cattle and sheep during the day and prefer to eat 23 wild plant species, in which 17 species have medicinal values. At night, the pigs are artificially fed and rest in the pigsty. The local Bai and Lisu people have developed a creative food culture, rituals, and festivals culture associated with Gaoligongshan pigs. Overall, the biocultural diversity of Gaoligongshan pig contributes to the in situ conservation of genetic diversity of this important hog landrace, and supports rural development in this remote area. Full article
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9 pages, 664 KiB  
Article
Trichinella Outbreaks on Pig Farms in Poland in 2012–2020
by Ewa Bilska-Zając, Mirosław Różycki, Weronika Korpysa-Dzirba, Aneta Bełcik, Anna Ziętek-Barszcz, Magdalena Włodarczyk-Ramus, Aneta Gontarczyk and Tomasz Cencek
Pathogens 2021, 10(11), 1504; https://doi.org/10.3390/pathogens10111504 - 18 Nov 2021
Cited by 11 | Viewed by 3705
Abstract
Trichinella nematodes continue to circulate in various hosts both in the domestic and sylvatic cycles. In the majority of countries in Europe, wild boars have been noticed as a primary source of Trichinella spp. infections in humans. However, in some regions, the meat [...] Read more.
Trichinella nematodes continue to circulate in various hosts both in the domestic and sylvatic cycles. In the majority of countries in Europe, wild boars have been noticed as a primary source of Trichinella spp. infections in humans. However, in some regions, the meat of pigs containing Trichinella spp. larvae can still be a cause of trichinellosis. Therefore, in the present study, we aimed to determine and present actual data on the occurrence of Trichinella spp. on pig farms (Sus scrofa f. domestica) in Poland. In this study, over 194 million pigs, slaughtered for commercial and personal purposes between 2012 and 2020, were tested with a digestion method according to the official rules for Trichinella control. Positive results were noticed in 172 pigs which gives an overall prevalence of 0.000088%. On seven farms, rats (Rattus norvegicus) infected with Trichinella spp. were also discovered. The species identification showed pigs were infected with Trichinella spiralis on 26 farms, and on four farms pigs with Trichinella britovi infections were found. Therefore, it is important to constantly monitor pigs for the presence of these parasites, especially in view of the growing interest in organic meat originated from ecological farms. Full article
(This article belongs to the Section Parasitic Pathogens)
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19 pages, 3989 KiB  
Article
Impact of Housing Condition on Welfare and Behavior of Immunocastrated Fattening Pigs (Sus scrofa domestica)
by Linda Steybe, Kevin Kress, Sonja Schmucker and Volker Stefanski
Animals 2021, 11(3), 618; https://doi.org/10.3390/ani11030618 - 26 Feb 2021
Cited by 4 | Viewed by 2932
Abstract
The aim of this study was to investigate whether the well-known positive effects of immunocastration on the behavior and welfare of pigs persist under varying environments. One hundred forty-four male pigs were studied with regard to their sex category (EM: entire males, IC: [...] Read more.
The aim of this study was to investigate whether the well-known positive effects of immunocastration on the behavior and welfare of pigs persist under varying environments. One hundred forty-four male pigs were studied with regard to their sex category (EM: entire males, IC: immunocastrates, BA: barrows) and housing environment (ENR: enriched, STD: standard, MIX: repeated social mixing). The vaccination of immunocastrates included two injections at the age of 12 and 22 weeks. Regardless of the housing conditions, frequencies of sexual and fighting behavior expressed by immunocastrates shifted from boar-like to barrow-like behavior after the second immunocastration vaccination (Mixed model analysis, p < 0.05). Penis biting decreased in IC after the second vaccination (Wilcoxon signed-rank tests, p = 0.036) and penile injuries were lower in IC animals compared to EM (Mixed model analysis, p < 0.001). Housing-dependent effects on behavior could also be observed in the animals at a relatively young age. Enriched housing showed a beneficial effect on play behavior (Chi-square test, p < 0.001) and the social mixing environment reduced the number of social nosing events (Mixed model analysis, p < 0.05). The positive effects of immunocastration thus are robust to all housing conditions assessed in this study. Full article
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12 pages, 1179 KiB  
Article
Seroprevalence of Hepatitis E Virus in Moose (Alces alces), Reindeer (Rangifer tarandus), Red Deer (Cervus elaphus), Roe Deer (Capreolus capreolus), and Muskoxen (Ovibos moschatus) from Norway
by Carlos Sacristán, Knut Madslien, Irene Sacristán, Siv Klevar and Carlos G. das Neves
Viruses 2021, 13(2), 224; https://doi.org/10.3390/v13020224 - 1 Feb 2021
Cited by 16 | Viewed by 6003
Abstract
Hepatitis E virus (HEV), a major cause of viral hepatitis worldwide, is considered an emerging foodborne zoonosis in Europe. Pigs (Sus scrofa domestica) and wild boars (S. scrofa) are recognized as important HEV reservoirs. Additionally, HEV infection and exposure [...] Read more.
Hepatitis E virus (HEV), a major cause of viral hepatitis worldwide, is considered an emerging foodborne zoonosis in Europe. Pigs (Sus scrofa domestica) and wild boars (S. scrofa) are recognized as important HEV reservoirs. Additionally, HEV infection and exposure have been described in cervids. In Norway, HEV has been identified in pigs and humans; however, little is known regarding its presence in wild ungulates in the country. We used a species-independent double-antigen sandwich ELISA to detect antibodies against HEV in the sera of 715 wild ungulates from Norway, including 164 moose (Alces alces), 186 wild Eurasian tundra reindeer (Rangifer tarandus tarandus), 177 red deer (Cervus elaphus), 86 European roe deer (Capreolus capreolus), and 102 muskoxen (Ovibos moschatus). The overall seroprevalence was 12.3% (88/715). Wild reindeer had the highest seropositivity (23.1%, 43/186), followed by moose (19.5%, 32/164), muskoxen (5.9%, 6/102), and red deer (4%, 7/177). All roe deer were negative. According to our results, HEV is circulating in wild ungulates in Norway. The high seroprevalence observed in wild reindeer and moose indicates that these species may be potential reservoirs of HEV. To the authors’ knowledge, this is the first report of HEV exposure in reindeer from Europe and in muskoxen worldwide. Full article
(This article belongs to the Special Issue Animal and Wildlife Viruses)
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12 pages, 3520 KiB  
Article
Clinical and Histological Differences between Guided Tissue Regeneration with Acellular Dermal Matrix of Porcine Origin and Autologous Connective Tissue: An Animal Study
by Javier Aragoneses, Ana Suárez, Cinthia Rodríguez and Juan Manuel Aragoneses
Materials 2021, 14(2), 272; https://doi.org/10.3390/ma14020272 - 7 Jan 2021
Cited by 4 | Viewed by 2538
Abstract
This research aims to evaluate the clinical and histological parametric differences concerning keratinized tissue that result from two regeneration techniques, the subepithelial autologous connective tissue graft (ACTG) and the acellular dermal matrix (MD) of porcine origin, performed on surgical beds on edentulous spaces [...] Read more.
This research aims to evaluate the clinical and histological parametric differences concerning keratinized tissue that result from two regeneration techniques, the subepithelial autologous connective tissue graft (ACTG) and the acellular dermal matrix (MD) of porcine origin, performed on surgical beds on edentulous spaces in an animal model. The parameters of the MD and ACTG groups were compared with samples of the control group (CG) after 15, 45, and 90 days. Nine female white pigs (Sus scrofa domestica) were used, and each animal provided 20 study areas (12 MD and 8 ACTG). At 15 days, the keratin layer thickness in the MD group was greater than those of the ACTG (25.27 vs. 19.95 μm) and the CG (21.2 μm). After 45 days, the MD and ACTG thickness values decreased but were higher than the CG. At 90 days, MD (19.46 μm) obtained a value close to that of CG, and the ACTG decreased to CG (15.53 μm, p < 0.001). The use of an MD may be a viable alternative to the ACTG because of its ability to provide increased keratinized tissue in comparison to the ACTG. Full article
(This article belongs to the Section Biomaterials)
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15 pages, 1410 KiB  
Article
Evaluation of the CRISPR/Cas9 Genetic Constructs in Efficient Disruption of Porcine Genes for Xenotransplantation Purposes Along with an Assessment of the Off-Target Mutation Formation
by Natalia Ryczek, Magdalena Hryhorowicz, Daniel Lipiński, Joanna Zeyland and Ryszard Słomski
Genes 2020, 11(6), 713; https://doi.org/10.3390/genes11060713 - 26 Jun 2020
Cited by 8 | Viewed by 4736
Abstract
The increasing life expectancy of humans has led to an increase in the number of patients with chronic diseases and organ failure. However, the imbalance between the supply and the demand for human organs is a serious problem in modern transplantology. One of [...] Read more.
The increasing life expectancy of humans has led to an increase in the number of patients with chronic diseases and organ failure. However, the imbalance between the supply and the demand for human organs is a serious problem in modern transplantology. One of many solutions to overcome this problem is the use of xenotransplantation. The domestic pig (Sus scrofa domestica) is currently considered as the most suitable for human organ procurement. However, there are discrepancies between pigs and humans that lead to the creation of immunological barriers preventing the direct xenograft. The introduction of appropriate modifications to the pig genome to prevent xenograft rejection is crucial in xenotransplantation studies. In this study, porcine GGTA1, CMAH, β4GalNT2, vWF, ASGR1 genes were selected to introduce genetic modifications. The evaluation of three selected gRNAs within each gene was obtained, which enabled the selection of the best site for efficient introduction of changes. Modifications were examined after nucleofection of porcine primary kidney fibroblasts with CRISPR/Cas9 system genetic constructs, followed by the tracking of indels by decomposition (TIDE) analysis. In addition, off-target analysis was carried out for selected best gRNAs using the TIDE tool, which is new in the research conducted so far and shows the utility of this tool in these studies. Full article
(This article belongs to the Special Issue Pig Genomics and Genetics)
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22 pages, 820 KiB  
Review
Application of Genetically Engineered Pigs in Biomedical Research
by Magdalena Hryhorowicz, Daniel Lipiński, Szymon Hryhorowicz, Agnieszka Nowak-Terpiłowska, Natalia Ryczek and Joanna Zeyland
Genes 2020, 11(6), 670; https://doi.org/10.3390/genes11060670 - 19 Jun 2020
Cited by 46 | Viewed by 15447
Abstract
Progress in genetic engineering over the past few decades has made it possible to develop methods that have led to the production of transgenic animals. The development of transgenesis has created new directions in research and possibilities for its practical application. Generating transgenic [...] Read more.
Progress in genetic engineering over the past few decades has made it possible to develop methods that have led to the production of transgenic animals. The development of transgenesis has created new directions in research and possibilities for its practical application. Generating transgenic animal species is not only aimed towards accelerating traditional breeding programs and improving animal health and the quality of animal products for consumption but can also be used in biomedicine. Animal studies are conducted to develop models used in gene function and regulation research and the genetic determinants of certain human diseases. Another direction of research, described in this review, focuses on the use of transgenic animals as a source of high-quality biopharmaceuticals, such as recombinant proteins. The further aspect discussed is the use of genetically modified animals as a source of cells, tissues, and organs for transplantation into human recipients, i.e., xenotransplantation. Numerous studies have shown that the pig (Sus scrofa domestica) is the most suitable species both as a research model for human diseases and as an optimal organ donor for xenotransplantation. Short pregnancy, short generation interval, and high litter size make the production of transgenic pigs less time-consuming in comparison with other livestock species This review describes genetically modified pigs used for biomedical research and the future challenges and perspectives for the use of the swine animal models. Full article
(This article belongs to the Special Issue Pig Genomics and Genetics)
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15 pages, 5073 KiB  
Article
Comparative Quantitative Analysis of Porcine Optic Nerve Head and Retina Subproteomes
by Sebastian Funke, Carsten Schmelter, Sascha D. Markowitsch, Natarajan Perumal, Janis C. Heyne, Katharina Bell, Norbert Pfeiffer and Franz H. Grus
Int. J. Mol. Sci. 2019, 20(17), 4229; https://doi.org/10.3390/ijms20174229 - 29 Aug 2019
Cited by 6 | Viewed by 3238
Abstract
Optic nerve head (ONH) and retina (RET) are the main sites of damage in neurodegenerative optic neuropathies including glaucoma. Up to date, little is known about the molecular interplay between these two adjoining ocular components in terms of proteomics. To close this gap, [...] Read more.
Optic nerve head (ONH) and retina (RET) are the main sites of damage in neurodegenerative optic neuropathies including glaucoma. Up to date, little is known about the molecular interplay between these two adjoining ocular components in terms of proteomics. To close this gap, we investigated ONH and RET protein extracts derived from porcine eyes (n = 12) (Sus scrofa domestica Linnaeus 1758) using semi-quantitative mass spectrometry (MS)-based proteomics comprising bottom-up LC–ESI MS/MS and targeted SPE-MALDI-TOF MS analysis. In summary, more than 1600 proteins could be identified from the ONH/RET tissue complex. Moreover, ONH and RET displayed tissue-specific characteristics regarding their qualitative and semi-quantitative protein compositions. Gene ontology (GO)-based functional and protein–protein interaction analyses supported a close functional connection between the metabolic-related RET and the structural-associated ONH subproteomes, which could be affected under disease conditions. Inferred from the MS findings, stress-associated proteins including clusterin, ceruloplasmin, and endoplasmin can be proposed as extracellular mediators of the ONH/ RET proteome interface. In conclusion, ONH and RET show obvious proteomic differences reflecting characteristic functional features which have to be considered for future protein biomarker profiling studies. Full article
(This article belongs to the Section Molecular Biology)
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20 pages, 2648 KiB  
Article
Synthetic Polyclonal-Derived CDR Peptides as an Innovative Strategy in Glaucoma Therapy
by Carsten Schmelter, Kristian Nzogang Fomo, Natarajan Perumal, Caroline Manicam, Katharina Bell, Norbert Pfeiffer and Franz H. Grus
J. Clin. Med. 2019, 8(8), 1222; https://doi.org/10.3390/jcm8081222 - 15 Aug 2019
Cited by 13 | Viewed by 4465
Abstract
The pathogenesis of glaucoma is strongly associated with the occurrence of autoimmune-mediated loss of retinal ganglion cells (RGCs) and additionally, recent evidence shows that specific antibody-derived signature peptides are significantly differentially expressed in sera of primary-open angle glaucoma patients (POAG) compared to healthy [...] Read more.
The pathogenesis of glaucoma is strongly associated with the occurrence of autoimmune-mediated loss of retinal ganglion cells (RGCs) and additionally, recent evidence shows that specific antibody-derived signature peptides are significantly differentially expressed in sera of primary-open angle glaucoma patients (POAG) compared to healthy controls. Synthetically antibody-derived peptides can modulate various effector functions of the immune system and act as antimicrobial or antiviral molecules. In an ex vivo adolescent glaucoma model, this study, for the first time, demonstrates that polyclonal-derived complementarity-determining regions (CDRs) can significantly increase the survival rate of RGCs (p = 0.013). We subsequently performed affinity capture experiments that verified the mitochondrial serine protease HTRA2 (gene name: HTRA2) as a high-affinity retinal epitope target of CDR1 sequence motif ASGYTFTNYGLSWVR. Quantitative proteomic analysis of the CDR-treated retinal explants revealed increased expression of various anti-apoptotic and anti-oxidative proteins (e.g., VDAC2 and TXN) compared to untreated controls (p < 0.05) as well as decreased expression levels of cellular stress response markers (e.g., HSPE1 and HSP90AA1). Mitochondrial dysfunction, the protein ubiquitination pathway and oxidative phosphorylation were annotated as the most significantly affected signaling pathways and possibly can be traced back to the CDR-induced inhibition or modulation of the master regulator HTRA2. These findings emphasize the great potential of synthetic polyclonal-derived CDR peptides as therapeutic agents in future glaucoma therapy and provide an excellent basis for affinity-based biomarker discovery purposes. Full article
(This article belongs to the Section Ophthalmology)
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