Search Results (14)

Water quality indicator algorithms often separate marine and freshwater systems, introducing artificial boundaries and artifacts in the freshwater to ocean continuum. Building upon the Ocean Colour- (OC) and Lakes Climate Change Initiative (CCI) projects, we propose an improved tool to assess the interactions across river–sea transition zones. Fuzzy clustering methods are used to generate optical water types (OWT) representing spectrally distinct water reflectance classes, occurring within a given region and period (here 2016–2021), which are then utilized to assign membership values to every OWT class for each pixel and seamlessly blend optimal in-water algorithms across the region. This allows a more flexible representation of water provinces across transition zones than classic hard clustering techniques. Improvements deal with expanded sensor spectral band-sets, such as Sentinel-3 OLCI, and increased spatial resolution with Sentinel-2 MSI high-resolution data. Regional clustering was found to be necessary to capture site-specific characteristics, and a method was developed to compare and merge regional cluster sets into a pan-regional representative OWT set. Fuzzy clustering OWT timeseries data allow unique insights into optical regime changes within a lagoon, estuary, or delta system, and can be used as a basis to improve WQ algorithm performance. Full article

This study analyses land use changes in the Sado Estuary (West-Central Portugal) based on a multi-temporal analysis of 19th century cartographic data and 21st century remote sensing land use maps, updated by fieldwork. A GIS plot of land use evolution is summarized in a quantitative table. The comparison shows the changes in land use, with increasing occupation by human economic activities, including extensive agriculture and forestry, as well as localized urbanization and industrialization. The main elements of the landscape impacted by anthropogenic uses were (i) hydrography—river dams affected the flow dynamics and sedimentary processes in the estuary; (ii) vegetation—increasing agriculture and forestry reduced the area of native vegetation, which is now mostly occupied by vineyards, pine forests and cork oaks; (iii) wetlands—tidal and alluvial plains are being occupied by rice cultivation, aquaculture, industries, and ports; (iv) coastal dunes—new developments are occupying large areas of Holocene coastal dunes; and (v) natural environment—mining and dredging have affected some habitats and biodiversity. This analysis is intended to help the territorial organization of present and future economic activities, as well as to reduce environmental and social problems, thus promoting the long-term sustainability of this rapidly evolving region. Full article

Halophyte plants and seaweed are described in the literature as rich sources of antioxidant compounds that can be used in the pharmaceutical and food industries. In this work, we studied the antioxidant composition of five species of halophytic plants (Suaeda vera Forssk, Halimione portulacoides L., Inula crithmoides L., Salicornia ramosissima (Hook.f.) J. Woods and Sarcocornia perennis (Mill.) A.J.Scott) and three seaweeds (Gracilaria gracilis (Stackhouse) Steentoft, L.Irvine and Farnham, Fucus spiralis L. and Ulva rigida C. Agardh) collected in Sado Estuary, Portugal. In the case of the plants, different parts of the plant were also assessed. Various extraction procedures were also performed to understand which methods were most suitable for extracting the various antioxidant compounds. Therefore, the aim of this study was to characterize the antioxidant compounds in halophytes and seaweed using various methods (ABTS, DPPH and FRAP), as well as the phenolic (TPC) and flavonoid (TFC) contents in the different extracts obtained. The amount of soluble protein in each extract was also determined. The results show that methanolic extracts generally have a higher antioxidant capacity, while the highest soluble protein content was observed in aqueous extracts. The seaweed Fucus Spiralis showed the highest antioxidant content, while in halophytic plants the highest antioxidant content was detected in the leaves. In general, this work confirms the potential of halophytes and seaweed as sources of antioxidant compounds for use in the food and pharmaceutical industries. Full article

Aquaculture located in urban river estuaries, where other anthropogenic activities may occur, has an impact on and may be affected by the environment where they are inserted, namely by the exchange of antimicrobial resistance genes. The latter may ultimately, through the food chain, represent a source of resistance genes to the human resistome. In an exploratory study of the presence of resistance genes in aquaculture sediments located in urban river estuaries, two machine learning models were applied to predict the source of 34 resistome observations in the aquaculture sediments of oysters and gilt-head sea bream, located in the estuaries of the Sado and Lima Rivers and in the Aveiro Lagoon, as well as in the sediments of the Tejo River estuary, where Japanese clams and mussels are collected. The first model included all 34 resistomes, amounting to 53 different antimicrobial resistance genes used as source predictors. The most important antimicrobial genes for source attribution were tetracycline resistance genes tet(51) and tet(L); aminoglycoside resistance gene aadA6; beta-lactam resistance gene blaBRO-2; and amphenicol resistance gene cmx_1. The second model included only oyster sediment resistomes, amounting to 30 antimicrobial resistance genes as predictors. The most important antimicrobial genes for source attribution were the aminoglycoside resistance gene aadA6, followed by the tetracycline genes tet(L) and tet(33). This exploratory study provides the first information about antimicrobial resistance genes in intensive and semi-intensive aquaculture in Portugal, helping to recognize the importance of environmental control to maintain the integrity and the sustainability of aquaculture farms. Full article

The Sado basin (~8000 km²) is an area where intensive agriculture occurs. However, this region still has few data about the water levels of priority pesticides such as fungicides, herbicides, and insecticides. Therefore, water samples were collected every two months at nine sites along the Sado River Estuary and analyzed by GC-MS/MS to determine the influx of pesticides in that ecosystem. More than 87% of the pesticides were quantified, and 42% and 72% were above the maximum totals established by the European Directives 98/83/EC and 2013/39/EU, respectively. Fungicides (91%), herbicides (87%), and insecticides (85%) attained average annual amounts of ≈3.2 µg/L, ≈1.0 µg/L, and ≈12.8 µg/L, respectively. A mathematical approach was used to evaluate the hazard of the pesticide mixture at the maximum concentrations found in this area. The assessment identified invertebrates as the most at-risk trophic level and identified two chemicals (chlorpyriphos and cyfluthrin) as the primary culprits. This assumption was supported by acute in vivo assays using Daphnia magna. These observations, and the high concentrations of phosphates, indicate that the status of the Sado waters poses environmental and potential human health risks. Full article

Marine bacteria are a significant source of bioactive compounds for various biotechnological applications. Among these, actinomycetes have been found to produce a wide range of secondary metabolites of interest. Saccharopolyspora is one of the genera of actinomycetes that has been recognized as a potential source of these compounds. This study reports the characterization and genomic analysis of Saccharopolyspora sp. NFXS83, a marine bacterium isolated from seawater from the Sado estuary in Portugal. The NFXS83 strain produced multiple functional and stable extracellular enzymes under high-salt conditions, showed the ability to synthesize auxins such as indole-3-acetic acid, and produced diffusible secondary metabolites capable of inhibiting the growth of Staphylococcus aureus. Furthermore, when Phaeodactylum tricornutum was co-cultivated with strain NFXS83 a significant increase in microalgae cell count, cell size, auto-fluorescence, and fucoxanthin content was observed. Detailed analysis revealed the presence of clusters involved in the production of various secondary metabolites, including extracellular enzymes, antimicrobial compounds, terpenes, and carotenoids in the genome of strain NFXS83. Ultimately, these findings indicate that Saccharopolyspora sp. NFXS83 has a significant potential for a wide range of marine biotechnological applications. Full article

It is recognized that the spread of antibiotic resistance (AR) genes among aquatic environments, including aquaculture and the human environment, can have detrimental effects on human and animal health and the ecosystem. Thus, when transmitted to the human microbiome or pathogens, resistance genes risk human health by compromising the eventual treatment of infections with antibiotic therapy. This study aimed to define the resistance profile of aquaculture farms and their potential risk for spreading. Twenty-four sediments from oyster and gilthead sea bream aquaculture farms located in three Portuguese river estuaries (17 sediments from Sado, 4 from Aveiro, and 3 from Lima) were studied by comparative metagenomic analysis. The computation of the diversity of genes conferring resistance per antibiotic class revealed a significant increase in aminoglycosides, beta-lactams, disinfectants, quinolones, and tetracyclines counts. In all geographic locations under study, the most diverse AR genes confer resistance to the macrolides, tetracyclines and oxazolidinones classes, all of which are medically important for human and animal therapies, as well as resistance to disinfectants. The diversity of mobile genetic elements correlated with the number of AR genes such as tetracyclines, suggesting that AR could be easily mobilized among bacterial genomes and microbiomes. Full article

Climate change is causing a northward shift of fish species and the tropicalisation of temperate zones. In this context, the toadfish Halobatrachus didactylus was found for the first time in 2018 in Galician waters (NW Spain), where a total of 39 specimens have been recorded so far in the southernmost part of those known as Rías Baixas. Preliminary analyses of the specimens showed a diet based mainly on crustaceans and molluscs. The length composition varied between 17 and 40 cm TL, and the estimated ages of seven individuals, with sizes ranging from 18 to 35 cm TL, ranged from 3 to 7 years. Histological reproductive analysis of 17 specimens showed an unbalanced sex ratio 2.4:1, favourable to males. Out of 12 males found, 2 (17%) were immature, ranging in size between 18 and 26.6 cm TL, whereas the other 10 (83%) were mature and greater than 25.8 cm TL. Furthermore, six of them were in the active spawning phase. Only five females were found, one (20%) being in the developing phase, and the remaining four (80%) in the spawning capable phase, with oocytes in the advanced vitellogenesis stage but without evidence of imminent spawning. These results suggest that this species is reproductively active in Galician waters. From a molecular point of view, this population has been compared with others along the Portuguese coast using the nucleotide sequences of a putative fragment of the mitochondrial control region and of the first intron of the ribosomal protein S7 gene. In the first case, a single haplotype is detected, which is the same as that occurring in all individuals captured further south in the Tagus and Sado estuaries. In the case of the S7 intron, no trend towards lower genetic diversity that could indicate lineage selection was detected. These data seem to support a very recent colonisation event. Full article

Weakfish (Cynoscion regalis) has been present in Iberian waters since at least 2011, when it was first recorded in the Guadalquivir estuary. Little is known about the preferences and feeding strategies of weakfish outside of its native range; therefore, in this work, we carried out a comprehensive study between March 2021 and September 2021 to elucidate these matters. In total, the stomach contents of 300 fish were examined. The fish were collected in spring and summer in the Gulf of Cadiz (Spain), with individuals caught ranging from 185 to 590 mm in total length. Due to the sampling period and size range of individuals, ontogenic and seasonal (spring–summer) variations in the diet were also explored. Overall, fish and crustaceans were the dominant groups consumed by weakfish. The European anchovy (Engraulis encrasicolus) and caramote prawn (Penaeus kerathurus) were the most abundant prey in each group. While no differences were found in the percentage of occurrence of fish in the non-empty stomachs analyzed in spring and summer (83%), a small increase was found in the percentage of occurrence of crustaceans from spring (20%) to summer (29%). In addition, the analysis of the results also suggested that weakfish of smaller sizes feed more on crustaceans, while bigger individuals feed mainly on fish. Our findings indicate that weakfish is a fully carnivorous species with a preference for fish. All this is in line with the diet and strategy that weakfish exhibits in its native area and with the first assessment made with the existing population in the Sado Estuary (Portugal). In recent years, due to the appearance of non-native species, there is increasing concern among local fishermen and the local authorities about the reduction in captures of certain species such as Penaeus kerathurus; therefore, this study could help researchers to understand the role of weakfish concerning this matter. The present study contributes to the ecological knowledge about this species in the Iberian Peninsula and the Gulf of Cadiz, helping the local authorities to establish, if needed, an appropriate management program to cope with this recently introduced species. Full article

Bivalve mollusks are an important resource due to their socioeconomic value and to the historical and genetic value of some species. Two nationally important oyster species-Portuguese oyster (Crassostrea angulata) and Japanese oyster (Crassostrea gigas) from distinctive areas in Portugal were studied to evaluate their sanitary status. Oysters were sampled from four different sites in Portugal. Oysters collected from Japanese oyster populations were cultivated in a strong ocean-influenced environment and Portuguese oyster populations were cultivated in wild-beds. The histopathological examination of both oyster species revealed the presence of parasites in gills, mantle epithelium, digestive gland tubules and connective tissue, with a moderate prevalence. In both populations was observed hemocytosis in the connective tissue, edema and metaplasia in the digestive gland and tissues necrosis. In wild populations from Sado and Mira estuaries the prevalence of mud blisters and gill lesions were higher than from populations produced on 0.50 m tables from mudflats. Biosecurity measures and diagnostic techniques are fundamental to control pathogenic agents, including the identification of pathogens at an early stage in their life cycles. This will prevent diseases and improve pathogen reduction on transport of animals from different countries and regions to new production areas to avoid the transmission of diseases. Full article

The production of cupped oysters is an important component of European aquaculture. Most of the production relies on the cultivation of the Pacific oyster Crassostrea gigas, although the Portuguese oyster Crassostrea angulata represents a valuable product with both cultural and economic relevance, especially in Portugal. The authors of the present study investigated the genetic diversity of Portuguese oyster populations of the Sado estuary, both from natural oyster beds and aquaculture facilities, through cox1 gene fragment sequencing. Then, a comparison with a wide dataset of cupped oyster sequences obtained from GenBank (up to now the widest available dataset in literature for the Portuguese oyster) was performed. Genetic data obtained from this work confirmed that the Pacific oyster does not occur in the natural oyster beds of the Sado estuary but showed that the species occasionally occurs in the oyster hatcheries. Moreover, the results showed that despite the founder effect and the bottleneck events that the Sado populations have experienced, they still exhibit high haplotype diversity. Risks are arising for the conservation of the Portuguese oyster reference populations of the Sado estuary due to the occurrence of the Pacific oyster in the local hatcheries. Therefore, researchers, local authorities, and oyster producers should work together to avoid the loss of this valuable resource. Full article

Monitoring water quality parameters and their ecological effects in transitional waters is usually performed through in situ sampling programs. These are expensive and time-consuming, and often do not represent the total area of interest. Remote sensing techniques offer enormous advantages by providing cost-effective systematic observations of a large water system. This study evaluates the potential of water quality monitoring using Sentinel-2 observations for the period 2018–2020 for the Sado estuary (Portugal), through an algorithm intercomparison exercise and time-series analysis of different water quality parameters (i.e., colored dissolved organic matter (CDOM), chlorophyll-a (Chl-a), suspended particulate matter (SPM), and turbidity). Results suggest that Sentinel-2 is useful for monitoring these parameters in a highly dynamic system, however, with challenges in retrieving accurate data for some of the variables, such as Chl-a. Spatio-temporal variability results were consistent with historical data, presenting the highest values of CDOM, Chl-a, SPM and turbidity during Spring and Summer. This work is the first study providing annual and seasonal coverage with high spatial resolution (10 m) for the Sado estuary, being a key contribution for the definition of effective monitoring programs. Moreover, the potential of remote sensing methodologies for continuous water quality monitoring in transitional systems under the scope of the European Water Framework Directive is briefly discussed. Full article

The circulation in estuaries promotes the transport of organisms, nutrients, oxygen and sediments. Simultaneously, the mixture of fresh and salt water leads to variations of the physicochemical and biological components of the region. Therefore, it is important to further understand the hydrodynamic patterns of an estuary as one of the bases to understand the whole dynamic of these systems, ecologically important regions that must be preserved. However, little is known about the hydrodynamics of some estuarine systems. In order to bridge the knowledge gap about the Sado estuary, sampling was conducted with the purpose of evaluating some circulation patterns of the estuary and classifying it according to the stratification of the water column. The campaigns were conducted to collect monthly data on the intensity and direction of the currents, and on the temperature and salinity of the water column, between September 2018 and September 2019. The data indicated that water circulation in the Sado estuary, occurred through the two main navigation channels (North and South), according to the tidal regime. Both the temperature and the salinity were homogeneous along the water column, revealing little stratification. The analysis suggests possible hydrodynamic changes of the estuary in the past years. Full article

New information on weakfish introduction vectors, its invasive status, distribution, and use as a fishing resource arose after the publication of “The transatlantic introduction of weakfish Cynoscion regalis (Bloch & Schneider, 1801) (Sciaenidae, Pisces) into Europe” by Morais and Teodósio (2016). Currently, the first known report of weakfish in Europe dates back to September 2009, with a specimen captured in the Schelde estuary (Belgium/The Netherlands). This fact suggests that weakfish could have been introduced into Europe via multiple and independent ballast water introduction events, and not through a point-source introduction event with subsequent dispersion as previously hypothesized. It is also unlikely that Schelde weakfish migrated southwards to colonize Iberian aquatic ecosystems. Weakfish have established a population in the Gulf of Cádiz region and have already reached an invasive status in the Sado estuary (Portugal). Weakfish were also captured in several other locations along the Portuguese coast, including the Tagus and Mira estuaries at least since 2013 or 2014, and the Ria Formosa lagoon in 2017. Tagus anglers caught weakfish specimens of ~1 kg and ~40 cm in November 2016, which corresponds to fish of 3+ years of age in the native range. The presence of weakfish in the Tagus estuary is still fairly unknown to local anglers. Sado weakfish has already been sold in local fish markets in southern Portugal for 3 to 10 € kg⁻¹. However, we consider that the weakfish sale price is underrated in comparison with other wild species (e.g., meagre, seabass, gilthead seabream). Increasing sale price will convince fishers to use weakfish as a new fishing resource; however, it is necessary to promote the species among consumers and evaluate consumers’ preference in respect to other species. A putative biological threat might turn into a new valuable fishing resource by implementing adequate management solutions. Full article