Search Results (92)

The soil-borne fungi, Setophoma terrestris and Fusarium spp., are often associated with pink root, although the etiology of the disease remains doubtful. While recognized as the primary inoculum, studies show conflicting views on the formation of chlamydospores and microsclerotia in Setophoma. Therefore, this study aims to clarify the etiology of the pink root of garlic and onion and the formation of chlamydospores and microsclerotia in Setophoma. The isolates were obtained from symptomatic tissues of garlic, leeks, brachiaria, onions, chives, and maize collected from seven different states in Brazil. Representative isolates were selected for pathogenicity tests. Sequence comparison of the tubulin gene showed Setophoma (n = 50) and Fusarium clades (n = 25). Garlic and onion plants inoculated with Setophoma showed pink root symptoms, while plants inoculated with different Fusarium isolates remained asymptomatic. Multigene analysis of pathogenic isolates confirms that only Setophoma terrestris causes pink root in garlic and onion. In addition, brachiaria, chives, and leeks are newly identified hosts of this pathogen in Brazil. To our knowledge, the main sources of primary inoculum of the disease are chlamydospores, pycnidia, colonized roots of garlic, onion, and plant debris of susceptible crops. The new information obtained in this study will be fundamental for researchers in the development of genotypes that are resistant to pink root and will help the efficient management of the disease. Full article

Soilborne diseases cause losses of 45–70% in faba bean in Ethiopia. Studies were undertaken to define soilborne pathogens and their complexes in Ethiopia. First, the severity of root rot was assessed in 150 field sites across seven Ethiopian regions. Soil samples were collected, and the DNA of 29 pests and pathogens was quantified using a commercial quantitative PCR (qPCR) soil testing service. There was a very high incidence rate of Macrophomina phaseolina, as well as Pythium clades F and I. The other detected species in order of incidence included Fusarium redolens, Rhizoctonia solani, Aphanomyces euteiches, Phytophthora megasperma, Sclerotinia sclerotiorum and S. minor, and Verticillium dahliae, as well as low levels of Thielaviopsis basicola. Five anastomosis groups (AG) of R. solani, namely AG2.1, AG2.2, AG3, AG4, and AG5, were detected, of which AG2.2 and AG4 were most prevalent. We believe this is the first report of occurrence for Ethiopia of A. euteiches, Ph. megasperma, T. basicola, and the five AGs for R. solani. There were very high incidence rates of the foliar pathogens Botrytis cinerea, B. fabae, Didymella pinodes, and Phoma pinodella and of the nematode Pratylenchus thornei, followed by P. neglectus and P. penetrans. The root rot severity and distribution varied significantly across regions, as well as with soil types, soil pH, and soil drainage. Subsequently, metabarcoding of the soil DNA was undertaken using three primer pairs targeting fungi (ITS2), Fusarium species (TEF1 α), and Oomycetes (ITS1Oo). The ITS2 and TEF1α primers emphasized F. oxysporum as the most abundant soilborne fungal pathogen and highlighted F. ananatum, F. brachygibbosum, F. brevicaudatum, F. clavum, F. flagelliforme, F. keratoplasticum, F. napiforme, F. nelsonii, F. neocosmosporiellum, F. torulosum, and F. vanettenii as first reports of occurrence for Ethiopia. The ITS1Oo primer confirmed Pythium spp. as the most prevalent of all Oomycetes. Full article

Grapevine (Vitis vinifera) is a key crop in Mediterranean agriculture, now increasingly threatened by Xylella fastidiosa subsp. Fastidiosa (Xff), the causal agent of Pierce’s disease. This study investigated: (1) the diversity of culturable fungal endophytes in the xylem sap of naturally Xff-infected grapevines, and (2) the interaction between Xff and the pathogenic fungus Sclerotinia sclerotiorum identified in the sap. The xylem sap was collected from Cabernet Sauvignon vines in Mallorca, Spain, and fungal communities were characterized using culture-dependent methods. Both beneficial fungi (e.g., Aureobasidium pullulans, Rhodotorula mucilaginosa) and pathogenic species (e.g., S. sclerotiorum, Cladosporium sp., Alternaria alternata, and the Phoma complex) were isolated from both Xff-positive and Xff-negative plants, indicating similar community profiles. Although limited by small sample size, these findings offer preliminary evidence of complex ecological interactions between Xff and the xylem-associated mycobiota, with potential implications for grapevine health and disease development under varying environmental and management conditions. Further experiments under controlled conditions revealed that grapevines co-inoculated with Xff and S. sclerotiorum showed increased disease severity, suggesting a synergistic interaction. These preliminary results highlight the complex interplay between Xff and the fungal endophytic microbiome, which may modulate grapevine susceptibility depending on environmental and management conditions. Full article

Recently, the ecological awareness of society and the need to take care of the natural environment have increased significantly. There is also an urgent problem of searching for new, environmentally friendly, and safe for people plant protection techniques using biological preparations, which reduce the intensive and cause significant health problems chemical protection. The study was conducted in a foil tunnel on the ‘Red House’ cultivar roses grown using an adapted method with shoot bending. Maintaining their health under tunnel conditions is often problematic. The study determined the effect of biopreparations on plant health (disease index), photosynthesis parameters, and gas exchange, as well as the species composition of fungi inhabiting roses. The preparations used did not negatively affect the process of photosynthesis and gas exchange. Among the 25 species of fungi obtained from its organs, the polyphagous species Botrytis cinerea dominated; the organs were very often colonized by fungi from the genera Fusarium, Phoma, and Alternaria alternata. The highest concentration of the Biosept 33 SL biopreparation shows a protective effect similar to that of the preparations used in chemical protection, and the degree of leaf blade infection shows a similar level. Full article

Phytopathogenic fungi and bacteria pose a serious threat to global agriculture, leading to significant economic losses and potential health risks. Consequently, the search for natural alternatives to synthetic agrochemicals has garnered increasing scientific attention, with plant extracts emerging as promising environmentally friendly solutions. In this context, the surface extract of Salvia discolor, obtained using dichloromethane, was analyzed for its bioactive potential. Chemical profiling revealed a rich composition of terpenoids and flavonoids. The antimicrobial potential of the ground extract was evaluated against nine phytopathogenic fungi (Alternaria solani, Botrytis cinerea, Colletotrichum lindemuthianum, Fusarium solani, Fusarium oxysporum f. sp. lactucae race 1, Phoma betae, Phaeomoniella chlamydospora, Pythium dissotocum, and Stemphylium sp.), and two phytopathogenic bacteria (Clavibacter michiganesis subsp. michiganesis and Pectobacterium carotovorum subsp. carotovorum), selected from common pathogens of agricultural interest. Complete inhibition of P. chlamydospora at 1000 µg mL⁻¹ and strong activity against P. dissotocum, F. solani and B. cinerea was observed, and low inhibition (<40%) against C. lindemuthianum and F. oxysporum f. sp. lactucae race 1. However, the extract showed promising results in the post-harvest protection of tomatoes against gray mold. Moderate antibacterial activity was seen against C. michiganensis subsp. michiganensis. These findings indicate that S. discolor extract has the potential to serve as an effective natural crop protection agent, though further optimization may be needed for broader application. Full article

Weeds are a significant challenge to global agricultural production, significantly impacting crop yields. The evolution of resistance to synthetic herbicides, along with their adverse environmental effects, underscores the need for alternative control strategies. This study reports the production, purification, and evaluation of the herbicidal activity of a metabolite produced by Phoma dimorpha (NRRL 43879) via submerged fermentation. To the best of our knowledge, this is the first report on the evaluation of the herbicidal potential of metabolites isolated from the cultivation of this microorganism. Metabolites extracted with ethyl acetate were fractionated into three fractions, with only one showing herbicidal activity. Fraction 1 controlled 96.25% of Amaranthus retroflexus plants in a leaf puncture bioassay at 2 mg mL⁻¹ and 96.67% when applied to the aerial parts at 600 µg mL⁻¹ with 0.1% Tween 80. The purified compound was also tested on Raphanus sativus seed germination, reducing rates by 80% and 26% at 24.5 mg mL⁻¹ and 12.25 mg mL⁻¹, respectively. Seedling length decreased by 80% and 31% under the same treatments. These results highlight the potential of this metabolite as a sustainable alternative for weed management, supporting the development of novel bioherbicides. Full article

Coffee cultivation is vital to the global economy, but faces significant challenges with diseases such as rust, miner, phoma, and cercospora, which impact production and sustainable crop management. In this scenario, deep learning techniques have shown promise for the early identification of these diseases, enabling more efficient monitoring. This paper proposes an approach for detecting diseases and pests on coffee leaves using an efficient single-shot object-detection algorithm. The experiments were conducted using the YOLOv8, YOLOv9, YOLOv10 and YOLOv11 versions, including their variations. The BRACOL dataset, annotated by an expert, was used in the experiments to guarantee the quality of the annotations and the reliability of the trained models. The evaluation of the models included quantitative and qualitative analyses, considering the mAP, F1-Score, and recall metrics. In the analyses, YOLOv8s stands out as the most effective, with a mAP of 54.5%, an inference time of 11.4 ms and the best qualitative predictions, making it ideal for real-time applications. Full article

Thiamine, crucial for energy metabolism, is associated with various human diseases when deficient. We studied how variations in the SLC19A3 gene, encoding THTR2, a thiamine transporter, may influence type 2 diabetes (T2DM) and gout (arthritis urica, AU). We characterized the SLC19A3 gene variants using bioinformatics and analyzed DNA samples from controls, T2DM, and gout patients to explore associations with physical/laboratory parameters. In human cells, we used a luciferase reporter assay to assess how these variants affect gene expression. We examined four large haplotypes (H1–4) in this gene, identified lead SNPs for the minor variants (MV), and explored potential transcription factor binding sites. We found that in T2DM patients, H3-MV correlated significantly with impaired glucose metabolism (pHOMA = 0.0189, pHbA1c% = 0.0102), while H4-MV correlated with altered uric acid (p = 0.0008) and white blood cell levels (p = 0.0272). In AU patients, H3-MV correlated with increased basophil granulocyte levels (p = 0.0273). In model cell lines, H3-MV presence increased gene expression (p = 0.0351), influencing responses to thiamine depletion and metformin (p = 0.0016). Although H4-MV did not directly affect luciferase expression, thiamine and fedratinib co-treatment significantly enhanced gene expression in thiamine-depleted cells (p = 0.04854). Our results suggest a connection between selected SLC19A3 variants and the severity of metabolic diseases or their response to treatment. Full article

Three new eremophilane sesquiterpenoids (1–3), together with six known analogues, were isolated from the marine-derived fungus Phoma sp. DXH009. Their structures were elucidated through detailed NMR and MS spectroscopic analysis, and the absolute configurations of 1–4 were determined by conformational analysis and quantum chemical TDDFT-ECD calculation. Their anti-neuroinflammatory activities were evaluated using the lipopolysaccharide (LPS)-induced BV2 microglial cells. The results indicated that compound 5 (dihydrosporogen AO-1) exhibited significant inhibitory effects on the production of nitric oxide (NO) levels (EC₅₀ = 3.11 μM) with less cytotoxicity, leading to a reversal effect in inducing microphage polarization in LPS-treated BV2 microglial cells. These were correlated with suppressions of the canonical NF-κB pathway as well as the expression levels of key neuroinflammatory markers, including COX2, TNF-α, IL-6, and IL-1β. Correspondingly, treating 5 in LPS-induced mice efficiently ameliorated neuroinflammation in the tissues of the cortex and hippocampus. These findings suggest that eremophilane sesquiterpenoid 5 could be a potential candidate for the development of anti-neuroinflammatory drugs. Full article

The bulbs of the lily plant Fritillaria thunbergii Miq. possess substantial medicinal properties for relieving coughs and clearing the lungs. However, excessive pursuit of yield during cultivation has led to a decrease in medicinal ingredients. Therefore, we aimed to investigate the effects of two single-factor treatments, shading (SK0) and potassium application (S0K), and their coupling treatment (SK) on bulb biomass and medicinal substance content, along with the role of rhizosphere microorganisms. Shading increased the content of active ingredients in bulbs by approximately 11.7% while decreasing bulb biomass by approximately 11.3%. SK treatment mitigated the biomass reduction caused by SK0 treatment while enhancing the accumulation of active ingredients in F. thunbergii, up to 1.2 times higher than that of SK0 treatment. In rhizosphere soil, Allorhizobium–Neorhizobium–Pararhizobium–Rhizobium (ANPR), Chryseobacterium, Brevundimonas, and Phoma exhibited significant positive correlations with medicinal components, among which ANPR, Brevundimonas, Chryseobacterium, and Phoma were responsive to SK treatments. Also, Burkholderia–Caballeronia–Paraburkholderia (BCP) and Brevundimonas responded to changes at different growth stages of F. thunbergii. The relative abundance of these microorganisms was associated with the alterations of soil factors resulting from shading or K application. Our results indicate that these microorganisms are beneficial to the growth of bulbs and the synthesis of active components in F. thunbergii. The combination of shading and K application may regulate the accumulation of medicinal substances in F. thunbergii by modulating the structure of the soil microbial community. Our results serve as a reference for soil improvement for medicinal plant cultivation. Full article

Palm trees (Arecaceae) are among the most popular ornamental plants worldwide. Despite extensive research on the fungi associated with Arecaceae, the diversity and ecological dynamics of fungi affecting ornamental palms remain poorly studied, although they have significant impact on palm health and economic value. Furthermore, while research on palm fungal diversity has traditionally focused on tropical assemblages, ornamental palms in temperate climates offer a unique opportunity to explore the diversity of palm fungi in non-native habitats. The present study conducted a preliminary assessment of the diversity and ecology of potential phytopathogenic fungi associated with foliar lesions on various ornamental palm host species in Portugal, combining morphological examination, PCR-based genomic fingerprinting, and biodiversity data analysis. The examination of 134 foliar lesions sampled from 100 palm trees resulted in a collection of 2064 palm leaf spotting fungi (PLSF), representing a diverse fungal assemblage of 320 molecular operational taxonomic units (MOTUs) across 97 genera. The overall fungal community composition revealed a distinct assemblage dominated by Neosetophoma, Alternaria, Phoma, and Cladosporium, with a profusion of infrequent and rare taxa consistent with a logseries distribution. Significantly positive co-occurrence (CO) patterns among prevalent and uncommon taxa suggest potential synergistic interactions enhancing fungal colonisation, persistence, and pathogenicity. The taxonomic structures of the PLSF contrasted markedly from tropical palm fungi, especially in the prevalence of pleosporalean coelomycetes of the Didymellaceae and Phaeosphaeriaceae, including recently introduced or not previously documented genera on Arecaceae. This novel assemblage suggests that climatic constraints shape the structure of palm fungal communities, resulting in distinctive temperate and tropical assemblages. In addition, the fungal assemblages varied significantly across palm host species, with temperate-native palms hosting more diverse, coelomycete-enriched communities. The present findings highlight foliar lesions as hyperdiverse microhabitats harbouring fungal communities with intricate interactions and a complex interplay of climatic, host, and ecological factors. With climate change altering environmental conditions, the identification of fungi thriving in or inhabiting these microhabitats becomes crucial for predicting shifts in pathogen dynamics and mitigating future fungal disease outbreaks. Understanding these complex ecological dynamics is essential for identifying potential phytopathogenic threats and developing effective management strategies for the health and sustainability of ornamental plants. Full article

High-grade B-cell lymphoma with 11q aberration (HGBCL-11q) is a rare germi-nal centre lymphoma characterised by a typical gain/loss pattern on chromo-some 11q but without MYC translocation. It shares some features with Burkitt lymphoma (BL), HGBCLs and germinal centre-derived diffuse large B-cell lym-phoma, not otherwise specified (GCB-DLBCL-NOS). Since microRNA expression in HGBCL-11q remains unknown, we aimed to identify and compare the mi-croRNA expression profiles in HGBCL-11q, BL and in GCB-DLBCL-NOS. Next-generation sequencing (NGS)-based microRNA profiling of HGBCL-11q (n = 6), BL (n = 8), and GCB-DLBCL-NOS without (n = 3) and with MYC rearrange-ment (MYC-R) (n = 7) was performed. We identified sets of 39, 64, and 49 mi-croRNAs differentiating HGBCL-11q from BL, and from GCB-DLBCL-NOS without MYC-R, respectively. The expression levels of miR-223-3p, miR-193b-3p, miR-29b-3p, and miR-146a-5p consistently differentiated HGBCL-11q from both BL, GCB-DLBCL-NOS without MYC-R. In addition, HGBCL-11q presented greater heterogeneity in microRNA expression than BL. The expression profile of MYC-regulated microRNAs differed in HGBCL-11q and in BL, while also clearly distinguishing HGBCL-11q and BL from GCB-DLBCL-NOS. The microRNA pro-file of HGBCL-11q differs from those of BL and GCB-DLBCL-NOS, exhibiting greater heterogeneity compared to BL. The microRNA profile further supports that HGBCL-11q is a distinct subtype of B-cell lymphoma. Full article

The paper investigates for the first time the impact of a novel sprayable, biodegradable polyester-urethane-urea (PEUU) mulch on the microbial community composition of an agricultural soil. In this study changes to the composition of the soil microbial community and in soil enzyme activity involved in nutrient cycling were monitored on tomato plants grown under controlled greenhouse conditions. Particular attention was given to impacts on the relative changes in abundance of soil microbes. The PEUU mulch reduced the abundance of a small number of soil microbe taxa, but also provided an environment in which some taxa, which were comparatively rare in initial and unmulched soils, thrived. Importantly, the relative abundances of Azospirillum, Noviherbaspirillum, Exophiala, Phoma, Chaetomium and Clonostachys species all increased in soils treated with PEUU mulch. Principal coordinates analysis revealed the microbial community composition on PEUU films alone and in PEUU treated soil were most similar, while the PEUU films’ microbial community differed the most from the initial soil’s microbial community. These results indicate that from an agricultural productivity and an environmental safety standpoint the use of PEUU mulch may be preferable to PE and could provide additional plant growth benefits by increasing the abundance of soil microbes. Full article

Peanut web blotch is an important leaf disease caused by Phoma arachidicola, which seriously affects the quality and yield of peanuts. However, the molecular mechanisms of peanut resistance to peanut web blotch are not well understood. In this study, a transcriptome analysis of the interaction between peanut (Arachis hypogaea) and P. arachidicola revealed that total 2989 (779 up- and 2210 down-regulated) genes were all differentially expressed in peanut leaves infected by P. arachidicola at 7, 14, 21 days post inoculation. The pathways that were strongly differentially expressed were the flavone or isoflavone biosynthesis pathways. In addition, two 2-hydroxy isoflavanone synthase genes, IFS1 and IFS2, were strongly induced by P. arachidicola infection. Overexpression of the two genes enhanced resistance to Phytophthora parasitica in Nicotiana benthamiana. Knockout of AhIFS genes in peanut reduced disease resistance to P. arachidicola. These findings demonstrated that AhIFS genes play key roles in peanut resistance to P. arachidicola infection. Promoter analysis of the two AhIFS genes showed several defense-related cis-elements distributed in the promoter region. This study improves our understanding of the molecular mechanisms behind resistance of peanut infection by P. arachidicola, and provides important information that could be used to undertake greater detailed characterization of web blotch resistance genes in peanut. Full article

Rapeseed, weeds, and pathogens interact with each other. However, these interactions are not well understood. The aim of our work was to describe the relationships between weed vegetation and pathogen manifestations in rapeseed stands. Results from the four seasons show that different rapeseed stand structures produce different weed and pathogen responses. Eighteen weed species were identified in the rapeseed stands. The selected characteristics of rapeseed stands, pathogens, and weed manifestations were evaluated using redundancy analysis. Rapeseed stands with the highest levels of pathogens present (Alternaria brassiceae (Berk.) Sacc., Botrytis cinerea (De Bary) Whetzel, Sclerotinia sclerotiorum (Lib.) de Bary, Verticilium longisporum (C.Stark) Karapapa, Bainbr & Heale) had the lowest seed yield. There, the weeds Cirsium arvense (L.) Scop., Tripleurospermum inodorum (L.) Sch. Bip., Sonchus arvensis L. were more abundant in dense stands, and Phoma lingam (telomorph: Leptosphaeria maculans Ces. & De Not.) was more common. Mutual positive interactions may also include the relationship between weed species of the Asteraceae family and increased manifestations of Phoma lingam. A similar relationship can be expected for the weeds Capsella bursa-pastoris (L.) Medik., Descurainia sophia (L.) Prantl and Sclerotinia sclerotiorum symptoms. Full article