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Keywords = M. Longissimus dorsi

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19 pages, 1894 KiB  
Article
Utility of Infrared Thermography for Monitoring of Surface Temperature Changes During Horses’ Work on Water Treadmill with an Artificial River System
by Urszula Sikorska, Małgorzata Maśko, Barbara Rey and Małgorzata Domino
Animals 2025, 15(15), 2266; https://doi.org/10.3390/ani15152266 - 1 Aug 2025
Viewed by 155
Abstract
Water treadmill (WT) exercise is used for horses’ rehabilitation and training. Given that each training needs to be individualized for each horse, the goal is to assess whether infrared thermography (IRT) can serve as a non-invasive tool for daily monitoring of individual training [...] Read more.
Water treadmill (WT) exercise is used for horses’ rehabilitation and training. Given that each training needs to be individualized for each horse, the goal is to assess whether infrared thermography (IRT) can serve as a non-invasive tool for daily monitoring of individual training and rehabilitation progress in horses undergoing WT exercise. Fifteen Polish Warmblood school horses were subjected to five WT sessions: dry treadmill, fetlock-depth water, fetlock-depth water with artificial river (AR), carpal-depth water, and carpal-depth water with AR. IRT images, collected pre- and post-exercise, were analyzed for the mean temperature (Tmean) and maximal temperature (Tmax) across 14 regions of interest (ROIs) representing the body surface overlying specific superficial muscles. While on a dry treadmill, Tmean and Tmax increased post-exercise in all ROIs; wetting of the hair coat limited surface temperature analysis in ROIs annotated on limbs. Tmax over the m. brachiocephalicus, m. trapezius pars cervicalis, m. triceps brachii, and m. semitendinosus increased during walking in carpal-depth water, which therefore may be suggested as an indirect indicator of increased activity related to forelimb protraction and flexion–extension of the limb joints. Tmax over the m. latissimus dorsi and m. longissimus increased during carpal-depth WT exercise with active AR mode, which may be suggested as an indicator of increased workload including vertical displacement of the trunk. Full article
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14 pages, 1299 KiB  
Article
Post-Slaughter Age Classification and Sex Determination in Deboned Beef Using Lipofuscin Autofluorescence and Amelogenin Gene Analysis
by Büşra Cumhur, Mustafa Yenal Akkurt, Tuğçe Anteplioğlu, Oğuz Kul, Ufuk Kaya and Bengi Çınar
Vet. Sci. 2025, 12(6), 593; https://doi.org/10.3390/vetsci12060593 - 17 Jun 2025
Viewed by 2210
Abstract
Beef meat quality and value are influenced by the breed, sex, and age of slaughtered animals. This study aimed to evaluate lipofuscin pigment autofluorescence as a method for age classification in beef meat samples and to determine the sex of market-obtained meat using [...] Read more.
Beef meat quality and value are influenced by the breed, sex, and age of slaughtered animals. This study aimed to evaluate lipofuscin pigment autofluorescence as a method for age classification in beef meat samples and to determine the sex of market-obtained meat using PCR-based amelogenin gene amplification. Deboned beef meat samples from M. longissimus dorsi and M. biceps femoris were collected from 67 slaughtered cows with known age and sex. Additionally, 48 market samples were tested for sex identification and age classification using the same methods. Lipofuscin deposition was first observed at 1.5 years, and autofluorescence analysis effectively distinguished between meat from younger animals (1.5–2.2 years) and older ones (3–13 years), with a statistically significant difference (p < 0.001). Lipofuscin levels and excitation intensity increased with age, and no differences were found between the two muscles analyzed. The sex determination results were fully consistent with the records, and 55.2% of animals aged 3 years and older were identified as female. These findings demonstrate the reliability of lipofuscin autofluorescence for binary age determination in beef and support the potential of combining age and sex classification to identify meat derived from older dairy cows in the marketplace. Full article
(This article belongs to the Special Issue Advancements in Livestock Histology and Morphology)
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13 pages, 354 KiB  
Article
Effects of Feed Supplemented with Fermented Pine Needles (Pinus ponderosa) on Carcass Quality, Meat Quality, and Antioxidant Capacity of Growing–Finishing Pigs
by Wenfeng Ma, Zhuo Ma, Pei Mao, Xiaoli Zhang, Xiaohong Wu, Mengmeng Gao and Qiujue Wu
Foods 2025, 14(12), 2046; https://doi.org/10.3390/foods14122046 - 10 Jun 2025
Viewed by 588
Abstract
The purpose of this study was to investigate the effects of fermented pine needles on the carcass traits, meat quality, and antioxidant capacity of finishing pigs. In total, 80 Duroc × (Landrace × Large white) crossbred pigs of approximately 4 months of age, [...] Read more.
The purpose of this study was to investigate the effects of fermented pine needles on the carcass traits, meat quality, and antioxidant capacity of finishing pigs. In total, 80 Duroc × (Landrace × Large white) crossbred pigs of approximately 4 months of age, with an initial body weight of 60.5 ± 2.5 kg, were randomly assigned to four experimental treatments, which were then denoted as the control treatment (basal diet), the fermented pine needle (FR) 1 treatment, the FR2 treatment, and the FR3 treatment (the pigs were fed the basal diet supplemented with 1.0, 2.0, and 3.0% fermented pine needles, respectively) for 55 d. The obtained results showed that, compared with the CON group, the fermented pine needle treatments increased the lean meat percentage, total antioxidative capacity, and superoxide dismutase activity in the serum and longissimus dorsi muscle. In addition, the treatments increased the mRNA expression levels of SOD1, catalase, and Nrf2 in the muscle and decreased the malondialdehyde activity in the serum and longissimus dorsi muscle and the Keap1 mRNA expression level. Compared with the CON and FR1 treatment, the FR2 and FR3 treatments increased springiness, serum GSH-Px activity, and longissimus dorsi muscle CAT activity, and decreased hardness, chewiness, gumminess, and cohesiveness. Moreover, compared with the CON treatment and other fermented pine needle treatments, the FR2 treatment not only significantly elevated the carcass weight, dressing percentage, pH24h, a* value (redness), and marbling scores of the finishing pigs, but also remarkably reduced the L* value (lightness), b* value (yellowness), and shear force in the meat quality. In conclusion, the experiment indicated that the addition of fermented pine needles to the diet has no negative impact on the carcass characteristics of finishing pigs and could improve the tenderness and freshness of the meat, as evidenced by the modified antioxidant enzyme activity and mRNA expression levels of antioxidant genes in the muscles of finishing pigs. Full article
(This article belongs to the Section Meat)
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20 pages, 11248 KiB  
Article
Integrated Analysis of DNA Methylome and Transcriptome Reveals Regulatory Mechanism in the Longissimus Dorsi of Duroc Pigs
by Shiyin Li, Yarui Gao, Lixia Ma, Wei Chen, Zhao Ma, Zhanchi Ren, Yunzhou Wang and Yongqing Zeng
Cells 2025, 14(11), 786; https://doi.org/10.3390/cells14110786 - 27 May 2025
Viewed by 597
Abstract
DNA methylation plays a pivotal role in the epigenetic regulation of gene expression and holds promise for enhancing livestock meat production. In this study, we analyzed the DNA methylome and transcriptome of the longissimus dorsi muscle (LDM) in Duroc pigs with varying growth [...] Read more.
DNA methylation plays a pivotal role in the epigenetic regulation of gene expression and holds promise for enhancing livestock meat production. In this study, we analyzed the DNA methylome and transcriptome of the longissimus dorsi muscle (LDM) in Duroc pigs with varying growth rates. Our results reveal that DNA methylation suppressed the expression of key muscle development markers (MYOD, MYOG, MHC1) and proliferation markers (PI67, PCNA), as well as the protein expression and phosphorylation of PI3K and AKT (p < 0.05). Dual-luciferase reporter assays and EMSA showed that SP1 overexpression enhanced the luciferase activity of the wild-type LPAR1 promoter, an effect amplified by the demethylating agent 5-AZA (p < 0.05). The EMSA further demonstrates the relationship between SP1 and the LPAR1 promoter region. Overexpression of SP1 upregulated LPAR1 expression at both the mRNA and protein levels (p < 0.05). Knockdown of LPAR1 reduced muscle marker gene expression and delayed myotube formation, while silencing SP1 disrupted the expression of LPAR1, MEF2C, and MHC1 (p < 0.05), and the demethylation induced by 5-AZA partially reversed these effects. These findings suggest that the DNA methylation/SP1/LPAR1 axis is critical for skeletal muscle growth and development, underscoring the regulatory role of DNA methylation in muscle formation. Full article
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15 pages, 10244 KiB  
Article
Yeast Culture Supplementation Improves Meat Quality by Enhancing Immune Response and Purine Metabolism of Small-Tail Han Sheep (Ovis aries)
by Xiaobo Bai, Liwei Wang, Hua Sun, Lvhui Sun, Jianghong An, Shaoyin Fu, Mengran Zhao, Fang Liu, Xiaoqi Ren, Zheng Liu, Jiangfeng He and Yongbin Liu
Int. J. Mol. Sci. 2025, 26(10), 4512; https://doi.org/10.3390/ijms26104512 - 9 May 2025
Viewed by 506
Abstract
Yeast culture is widely used in ruminants to improve gut health, immunity, and productivity; however, its impact on meat quality remains unclear. This study aimed to investigate the effects of yeast culture supplementation in the basic diet on meat quality of Small-tail Han [...] Read more.
Yeast culture is widely used in ruminants to improve gut health, immunity, and productivity; however, its impact on meat quality remains unclear. This study aimed to investigate the effects of yeast culture supplementation in the basic diet on meat quality of Small-tail Han sheep. A total of 40 Small-tail Han sheep (17.5 ± 1.2 kg) were randomly assigned to two treatment groups, with 20 sheep in each group. The sheep were fed either a basic diet (CON) or the basic diet supplemented with 1% yeast culture (YSD) for 90 days. At the end of the trial, the Longissimus dorsi muscle (LOD) of the sheep was collected for meat quality evaluation, as well as transcriptome and metabolome analyses. Meat quality data were analyzed using t-tests, while transcriptome and metabolome data were analyzed using bioinformatics tools. The results showed that YSD supplementation significantly reduced carcass fat content (p < 0.05) and increased the pH values (p < 0.05) of LOD compared to the CON group. Multi-omics analysis revealed significant changes in the levels of 349 transcripts and 149 metabolites (p < 0.05) in the YSD group relative to the CON group. These changes were primarily associated with immune response pathways and purine metabolism. Further integrated transcriptomics and metabolomics analysis identified significant alterations in the expression of adenylate kinase 4 (AK4) and ribonucleotide reductase M2 (RRM2), which influenced purine metabolites, such as ADP, GMP, 3′-AMP, 3′-GMP, dGDP, adenine, guanosine, and guanine. These metabolites were markedly upregulated in the LOD of the sheep supplemented with yeast culture. In conclusion, yeast culture supplementation improved the meat quality of Small-tail Han sheep, potentially through the enhancement of immune response and purine metabolism. These findings offer valuable insights into the molecular mechanisms underlying the effects of yeast culture on animal health and meat quality. Full article
(This article belongs to the Section Bioactives and Nutraceuticals)
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19 pages, 11997 KiB  
Article
Age-Related Meat Flavor Precursors of Naturally Grazed Sunit Sheep: Metabolomics and Transcriptomics Approaches
by Yajuan Huang, Xige He, Yunfei Han, Lu Chen, Xueting Yu, Jin Li, Xueyan Yun, Rina Sha and Gerelt Borjigin
Foods 2025, 14(9), 1616; https://doi.org/10.3390/foods14091616 - 2 May 2025
Viewed by 619
Abstract
This study elucidated the regulatory mechanisms of age-related meat flavor precursors in naturally grazed Sunit sheep of different ages (6, 18, and 30 months) by analyzing their metabolite and mRNA profiles. The longissimus dorsi muscle was sampled from each group and subjected to [...] Read more.
This study elucidated the regulatory mechanisms of age-related meat flavor precursors in naturally grazed Sunit sheep of different ages (6, 18, and 30 months) by analyzing their metabolite and mRNA profiles. The longissimus dorsi muscle was sampled from each group and subjected to metabolomics and transcriptomics analyses. A total of 395 differential metabolites (DMs) and 1482 differentially expressed genes (DEGs) were detected across the age groups. As the age increased, the expression levels of GOT1 and GLUL increased, activating arginine biosynthesis and alanine, aspartate, and glutamate metabolism pathways, which promoted the accumulation of umami compounds (L-glutamate and L-glutamine). Meanwhile, the expression level of LPIN1 increased with age, promoting glycerophospholipid metabolism and contributing to the development of lipid-related aroma. FADS1 and FADS2 expressed the highest levels at age Mth_18. This pattern influenced the unsaturated fatty acid biosynthesis pathway and consequently had a regulatory effect on the DHA levels. An amino acid metabolic regulatory network that involved arginine biosynthesis, alanine, aspartate and glutamate metabolisms, and arginine and proline metabolisms was established. This study provided insights into the variations in meat flavor precursors among sheep of different ages and elucidated the underlying regulatory mechanisms. Full article
(This article belongs to the Special Issue Factors Impacting Meat Product Quality: From Farm to Table)
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16 pages, 1492 KiB  
Article
Residual Black Wolfberry Fruit Improves Meat Quality of Sheep by Enhancing Immune and Antioxidant Capacity
by Pingping Duan, Yuxia Yang, Liangzhong Hou, Ying Wu, Jinlong Li, Congbin Xu and Tongjun Guo
Vet. Sci. 2025, 12(4), 324; https://doi.org/10.3390/vetsci12040324 - 1 Apr 2025
Viewed by 568
Abstract
The residual black wolfberry fruit (RBWF), rich in nutrients and active substances, has the potential to serve as an antibiotic alternative. This study evaluated the concentration-dependent effects of RBWF on serum biochemistry, immunity, antioxidant capacity, and meat quality of fattening sheep. Forty 3-month-old [...] Read more.
The residual black wolfberry fruit (RBWF), rich in nutrients and active substances, has the potential to serve as an antibiotic alternative. This study evaluated the concentration-dependent effects of RBWF on serum biochemistry, immunity, antioxidant capacity, and meat quality of fattening sheep. Forty 3-month-old sheep were randomly assigned into four groups with 10 replicates in each group and fed experimental RBWF-supplemented diets (0%, 2%, 5%, and 8%). The results showed that RBWF supplementation significantly increased the serum levels of TP, BUN, ALT, AST, IgA, IgM, T-AOC, SOD, and GSH-Px in sheep (p < 0.05), while significantly decreasing the levels of LDH, TG, LDL-c, IgG, and MDA (p < 0.05). Furthermore, dietary RBWF significantly increased the VB1 and IMP levels in the longissimus dorsi muscle of sheep (p < 0.05) and significantly decreased the contents of fat and cholesterol (p < 0.05). Finally, RBWF increased the contents of C20:4 and Glu (p < 0.05). In conclusion, dietary supplementation with RBWF can improve the immune and antioxidant capacity of sheep and has a certain effect on improving the flavor of meat, of which 5% is the best. Full article
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17 pages, 12831 KiB  
Article
The Development of Prenatal Muscle Satellite Cells (MuSCs) and Their Epigenetic Modifications During Skeletal Muscle Development in Yak Fetus
by Guoxiong Nan, Wei Peng, Shangrong Xu, Guowen Wang and Jun Zhang
Biology 2024, 13(12), 1091; https://doi.org/10.3390/biology13121091 - 23 Dec 2024
Viewed by 977
Abstract
To investigate prenatal muscle satellite cell (MuSC) development and the associated epigenetic modifications in yak. Here, we conducted morphological and protein co-localization analyses of fetal longissimus dorsi muscle at various developmental stages using histology and immunofluorescence staining methods. Our study observed that primary [...] Read more.
To investigate prenatal muscle satellite cell (MuSC) development and the associated epigenetic modifications in yak. Here, we conducted morphological and protein co-localization analyses of fetal longissimus dorsi muscle at various developmental stages using histology and immunofluorescence staining methods. Our study observed that primary muscle fibers began forming at 40 days of gestation, fully developed by 11 weeks, and secondary muscle fibers were predominantly formed by around 105 days. Throughout development, MuSCs were mainly located between the muscle fiber membrane and the basement membrane, acting as a reserve for the stem cell pool. MuSCs appeared within myotubes only during critical phases of primary and secondary muscle fiber formation. The proliferation of MuSCs gradually decreases until birth. MuSCs with 5mC modification show a trend of increasing first and then decreasing. MuSCs with 5hmC modification also present a dynamic change trend. The 41st day and 11th week are the critical periods for the changes of both. From the 11th week to around the 110th day of gestation, the modification effect of histone H3K4me3 is crucial for MuSCs during the development of the fetal longissimus dorsi muscle. Combined, our data identify key time points for yak fetal skeletal muscle growth and development and demonstrate that DNA methylation and histone modifications in MuSCs are closely related to this process, offering a valuable basis for future research into the molecular mechanisms underlying yak muscle development. Full article
(This article belongs to the Section Cell Biology)
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20 pages, 14962 KiB  
Article
Analysis of lncRNAs and Their Regulatory Network in Skeletal Muscle Development of the Yangtze River Delta White Goat
by Wenjun Tang, Jiahao Sun, Rahmani Mohammad Malyar and Fangxiong Shi
Animals 2024, 14(21), 3125; https://doi.org/10.3390/ani14213125 - 30 Oct 2024
Viewed by 1112
Abstract
lncRNA (long non-coding RNA) has been confirmed to be associated with growth, development, cell proliferation, and other biological processes. This study explored the potential role and dynamic change process of lncRNAs and related ceRNA (competitive endogenous RNA) networks in skeletal muscle development of [...] Read more.
lncRNA (long non-coding RNA) has been confirmed to be associated with growth, development, cell proliferation, and other biological processes. This study explored the potential role and dynamic change process of lncRNAs and related ceRNA (competitive endogenous RNA) networks in skeletal muscle development of the Yangtze River Delta White (YDW) goat, and to analyze the differences in muscle fiber characteristics and meat quality levels of goats at different growth stages. In this study, we compared the expression profiles of lncRNAs in the M. Longissimus dorsi of the YDW goats at different stages of growth and development by RNA sequencing. The results revealed that, in terms of muscle fiber characteristics, muscle fiber diameter and muscle fiber area were significantly larger in 6-month-old and 10-month-old goats than those in 2-month-old goats (p < 0.01). In terms of muscle quality, a* and b* values of 6-month-old goats were significantly higher than those of 2-month-old goats (p < 0.01). Additionally, the a*, b*, and L* values of 6-month-old goats were significantly higher than those of 10-month-old goats (p < 0.01). The pH at 45 min post-mortem (pH45min) in 10-month-old goats was significantly higher than that in 2-month-old goats (p = 0.006). However, the pH at 24 h post-mortem (pH24h) in 10-month-old goats was significantly lower than that in both 2-month-old and 6-month-old goats (p < 0.01). Shear force increased gradually with age (p < 0.05), while there was no significant difference in drip loss among the different age groups (p > 0.05). Among the identified lncRNA expression profiles, a total of 3073 lncRNAs were found, including 2676 known lncRNAs and 397 novel lncRNAs. Of these, 110, 93, and 99 lncRNAs were specifically expressed in 2-month-old, 6-month-old, and 10-month-old goats, respectively. The lncRNA target gene enrichment analysis showed that they were mainly involved in actin binding, the actin cytoskeleton, the myocardin complex, as well as the AMPK, FoxO, and GnRH signaling pathways. When constructing the lncRNA–miRNA–mRNA ceRNA network, it was found that the ceRNA networks centered on chi-miR-758 and chi-miR-127-5p were involved in muscle development across all three periods, suggesting that they may play an important role in goat muscle growth and development. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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18 pages, 1192 KiB  
Article
Effects of Acorns on Meat Quality and Lipid Metabolism-Related Gene Expression in Muscle Tissues of Yuxi Black Pigs
by Zhe Sun, Yadi Chang, Luyao Huang, Siyuan An, Dongyang Liu, Jinzhou Zhang and Zhiguo Miao
Metabolites 2024, 14(11), 578; https://doi.org/10.3390/metabo14110578 - 26 Oct 2024
Cited by 2 | Viewed by 1240
Abstract
Objectives: The aim of this study was to investigate the effects of acorn diets on the composition of fatty acid (FA) and the intramuscular fat (IMF) content in Yuxi black pigs. Methods: Ninety Yuxi black pigs with similar body weight (99.60 ± 2.32 [...] Read more.
Objectives: The aim of this study was to investigate the effects of acorn diets on the composition of fatty acid (FA) and the intramuscular fat (IMF) content in Yuxi black pigs. Methods: Ninety Yuxi black pigs with similar body weight (99.60 ± 2.32 kg) were randomly divided into five groups. The control group was fed a basal diet, and the AD20, AD30, AD40, and AD50 groups were fed experimental diets which contained 20%, 30%, 40%, and 50% acorns, respectively. The feeding experiment lasted for 120 days. Results: The results showed that compared with the control group, the content of SFA in longissimus dorsi and biceps femoris tissues in the AD30 group decreased by 8.57% and 20.10%, and the content of MUFA increased by 5.40% and 15.83%, respectively, while the PUFA content of biceps femoris increased by 5.40% (p < 0.05). Meanwhile, the IMF content of the AD30 group was significantly higher than that of the control group in the longissimus dorsi and biceps femoris. In addition, the mRNA expression levels of the ATGL, PPARγ, and FABP4 genes in longissimus dorsi (p < 0.05) were up-regulated, and HSL were down-regulated (p < 0.05) in the AD30 group. In the biceps femoris of the AD30 group, it was observed that the expression levels of the ACC and FAS genes were up-regulated (p < 0.05), while HSL and ATGL genes were down-regulated (p < 0.05). Conclusions: These results demonstrated that the addition of appropriate amounts of acorn to the diet (a 30% acorn diet) could improve the nutritional value of pork. Full article
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14 pages, 2683 KiB  
Article
Two-Stage Multimodal Method for Predicting Intramuscular Fat in Pigs
by Wenzheng Liu, Tonghai Liu, Jianxun Zhang and Fanzhen Wang
Agriculture 2024, 14(10), 1843; https://doi.org/10.3390/agriculture14101843 - 18 Oct 2024
Cited by 1 | Viewed by 1554 | Correction
Abstract
Intramuscular fat (IMF) content significantly influences pork tenderness, flavor, and juiciness. Maintaining an optimal IMF range not only enhances nutritional value but also improves the taste of pork products. However, traditional IMF measurement methods are often invasive and time-consuming. Ultrasound imaging technology offers [...] Read more.
Intramuscular fat (IMF) content significantly influences pork tenderness, flavor, and juiciness. Maintaining an optimal IMF range not only enhances nutritional value but also improves the taste of pork products. However, traditional IMF measurement methods are often invasive and time-consuming. Ultrasound imaging technology offers a non-destructive solution capable of predicting IMF content and assessing backfat thickness as well as longissimus dorsi muscle area size. A two-stage multimodal network model was developed in this study. First, using B-mode ultrasound images, we employed the UNetPlus segmentation network to accurately delineate the longissimus dorsi muscle area. Subsequently, we integrated data on backfat thickness and longissimus dorsi muscle area to create a multimodal input for IMF content prediction using our model. The results indicate that UNetPlus achieves a 94.17% mean Intersection over Union (mIoU) for precise longissimus dorsi muscle area segmentation. The multimodal network achieves an R2 of 0.9503 for IMF content prediction, with Spearman and Pearson correlation coefficients of 0.9683 and 0.9756, respectively, all within a compact model size of 4.96 MB. This study underscores the efficacy of combining segmented longissimus dorsi muscle images with data on backfat thickness and muscle area in a two-stage multimodal approach for predicting IMF content. Full article
(This article belongs to the Section Farm Animal Production)
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21 pages, 8143 KiB  
Article
microRNA Temporal-Specific Expression Profiles Reveal longissimus dorsi Muscle Development in Tianzhu White Yak
by Bingang Shi, Chune Zhu, Xiangyan Wang, Youpeng Qi, Jiang Hu, Xiu Liu, Jiqing Wang, Zhiyun Hao, Zhidong Zhao and Xiaolan Zhang
Int. J. Mol. Sci. 2024, 25(18), 10151; https://doi.org/10.3390/ijms251810151 - 21 Sep 2024
Viewed by 1622
Abstract
As a class of regulatory factors, microRNAs (miRNAs) play an important role in regulating normal muscle development and fat deposition. Muscle and adipose tissues, as major components of the animal organism, are also economically important traits in livestock production. However, the effect of [...] Read more.
As a class of regulatory factors, microRNAs (miRNAs) play an important role in regulating normal muscle development and fat deposition. Muscle and adipose tissues, as major components of the animal organism, are also economically important traits in livestock production. However, the effect of miRNA expression profiles on the development of muscle and adipose tissues in yak is currently unknown. In this study, we performed RNA sequencing (RNA-Seq) on Tianzhu white yak longissimus dorsi muscle tissue obtained from calves (6 months of age, M6, n = 6) and young (30 months of age, M30, n = 6) and adult yak (54 months of age, M54, n = 6) to identify which miRNAs are differentially expressed and to investigate their temporal expression profiles, establishing a regulatory network of miRNAs associated with the development of muscle and adipose. The results showed that 1191 miRNAs and 22061 mRNAs were screened across the three stages, of which the numbers of differentially expressed miRNAs (DE miRNAs) and differentially expressed mRNAs (DE mRNAs) were 225 and 450, respectively. The expression levels of the nine DE miRNAs were confirmed using a reverse transcription quantitative PCR (RT-qPCR) assay, and the trend of the assay results was generally consistent with the trend of the transcriptome profiles. Based on the expression trend, DE miRNAs were categorized into eight different expression patterns. Regarding the expression of DE miRNAs in sub-trends Profile 1 and Profile 2 (p < 0.05), the gene expression patterns were upregulated (87 DE miRNAs). Gene ontology (GO) and Kyoto Encyclopedia of Genes Genomes (KEGG) analyses showed that the identified DE miRNAs and DE mRNAs were enriched in pathway entries associated with muscle and intramuscular fat (IMF) growth and development. On this basis, we constructed a DE miRNA–mRNA interaction network. We found that some DE mRNAs of interest overlapped with miRNA target genes, such as ACSL3, FOXO3, FBXO30, FGFBP4, TSKU, MYH10 (muscle development), ACOX1, FADS2, EIF4E2, SCD1, EL0VL5, and ACACB (intramuscular fat deposition). These results provide a valuable resource for further studies on the molecular mechanisms of muscle tissue development in yak and also lay a foundation for investigating the interactions between genes and miRNAs. Full article
(This article belongs to the Section Molecular Biology)
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10 pages, 3500 KiB  
Article
One Copy Number Variation within the Angiopoietin-1 Gene Is Associated with Leizhou Black Goat Meat Quality
by Qun Wu, Xiaotao Han, Yuelang Zhang, Hu Liu, Hanlin Zhou, Ke Wang and Jiancheng Han
Animals 2024, 14(18), 2682; https://doi.org/10.3390/ani14182682 - 14 Sep 2024
Cited by 1 | Viewed by 1057
Abstract
The ANGPT1 gene plays a crucial role in the regulation of angiogenesis and muscle growth, with previous studies identifying copy number variations (CNVs) within this gene among Leizhou black goats. In this study, we investigated three ANGPT1 CNVs in 417 individuals of LZBG [...] Read more.
The ANGPT1 gene plays a crucial role in the regulation of angiogenesis and muscle growth, with previous studies identifying copy number variations (CNVs) within this gene among Leizhou black goats. In this study, we investigated three ANGPT1 CNVs in 417 individuals of LZBG using quantitative PCR (qPCR), examining the impact of different CNV types on the ANGPT1 gene expression and their associations with growth and meat quality traits. Notably, the ANGPT1 CNV-1 (ARS1_chr14:24950001-24953600) overlaps with protein-coding regions and conserved domains; its gain-of-copies genotype (copies ≥ 3) was significantly correlated with ANGPT1 mRNA expression in muscle tissue (p < 0.01). Furthermore, the gain-of-copies genotype of CNV-1 demonstrated significant correlations with various phenotypic traits, including carcass weight, body weight, shear stress, chest circumference, and cross-sectional area of longissimus dorsi muscle. These findings indicate that the CNV-1 gain-of-copies genotype in the ANGPT1 gene may serve as a valuable marker for selecting Leizhou black goats exhibiting enhanced growth and muscular development characteristics, thereby holding potential applications in targeted breeding programs aimed at improving meat quality. Full article
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16 pages, 4797 KiB  
Article
Fat Mass- and Obesity-Associated Protein (FTO) Promotes the Proliferation of Goat Skeletal Muscle Satellite Cells by Stabilizing DAG1 mRNA in an IGF2BP1-Related m6A Manner
by Jiangzhen Yao, Liang Xu, Zihao Zhao, Dinghui Dai, Siyuan Zhan, Jiaxue Cao, Jiazhong Guo, Tao Zhong, Linjie Wang, Li Li and Hongping Zhang
Int. J. Mol. Sci. 2024, 25(18), 9804; https://doi.org/10.3390/ijms25189804 - 11 Sep 2024
Cited by 1 | Viewed by 1426
Abstract
Skeletal muscle development is spotlighted in mammals since it closely relates to animal health and economic benefits to the breeding industry. Researchers have successfully unveiled many regulatory factors and mechanisms involving myogenesis. However, the effect of N6-methyladenosine (m6A) modification, [...] Read more.
Skeletal muscle development is spotlighted in mammals since it closely relates to animal health and economic benefits to the breeding industry. Researchers have successfully unveiled many regulatory factors and mechanisms involving myogenesis. However, the effect of N6-methyladenosine (m6A) modification, especially demethylase and its regulated genes, on muscle development remains to be further explored. Here, we found that the typical demethylase FTO (fat mass- and obesity-associated protein) was highly enriched in goats’ longissimus dorsi (LD) muscles. In addition, the level of m6A modification on transcripts was negatively regulated by FTO during the proliferation of goat skeletal muscle satellite cells (MuSCs). Moreover, a deficiency of FTO in MuSCs significantly retarded their proliferation and promoted the expression of dystrophin-associated protein 1 (DAG1). m6A modifications of DAG1 mRNA were efficiently altered by FTO. Intriguingly, the results of DAG1 levels and its m6A enrichment from FB23-2 (FTO demethylase inhibitor)-treated cells were consistent with those of the FTO knockdown, indicating that the regulation of FTO on DAG1 depended on m6A modification. Further experiments showed that interfering FTO improved m6A modification at site DAG1-122, recognized by Insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) and consequently stabilized DAG1 transcripts. Our study suggests that FTO promotes the proliferation of MuSCs by regulating the expression of DAG1 through m6A modification. This will extend our knowledge of the m6A-related mechanism of skeletal muscle development in animals. Full article
(This article belongs to the Section Molecular Biology)
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18 pages, 7167 KiB  
Article
Screening for Genes Related to Meat Production Traits in Duroc × Bama Xiang Crossbred Pigs by Whole Transcriptome Sequencing
by Yupei Xu, Hui Wang, Feng Cheng, Kuirong Chen, Guofeng Lei, Zhongrong Deng, Xiaoxiao Wu, Cong Liu, Jinglei Si and Jing Liang
Animals 2024, 14(16), 2347; https://doi.org/10.3390/ani14162347 - 14 Aug 2024
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Abstract
The meat production traits of pigs are influenced by the expression regulation of multiple gene types, including mRNAs, miRNAs, and lncRNAs. To study the differences in meat production traits at the transcriptional level among individuals with different growth rates, the longissimus dorsi samples [...] Read more.
The meat production traits of pigs are influenced by the expression regulation of multiple gene types, including mRNAs, miRNAs, and lncRNAs. To study the differences in meat production traits at the transcriptional level among individuals with different growth rates, the longissimus dorsi samples from eight Duroc × Bama Xiang F2 crossbred pigs with a fast growth rate (high gTroup) or a slow growth rate (low group) were selected to perform whole transcriptome sequencing and ceRNA regulatory network construction. This study first analyzed the differences in physiological and biochemical indicators, muscle histological characteristics, and muscle fiber types. A total of 248 mRNAs, 25 miRNAs, and 432 lncRNAs were identified as differentially expressed by whole transcriptome sequencing. Key genes that may influence meat production traits include MTMR14, PPP1R3A, PYGM, PGAM2, MYH1, and MYH7. The ceRNA regulatory network map showed that ENSSSCG00000042061-ssc-mir-208b-MYH7, ENSSSCG00000042223-ssc-mir-146a-MTMR14, ENSSSCG00000045539-ssc-mir-9-3-MYH1, and ENSSSCG00000047852-ssc-mir-103-1-PPP1R3A may be the key factors affecting meat production traits through their regulatory relationships. This study provides valuable insights into the molecular mechanisms underlying porcine muscle development and can aid in improving meat production traits. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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