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18 pages, 2018 KiB  
Article
Engineered Glibenclamide-Loaded Nanovectors Hamper Inflammasome Activation in an Ex Vivo Alzheimer’s Disease Model—A Novel Potential Therapy for Neuroinflammation: A Pilot Study
by Francesca La Rosa, Simone Agostini, Elisabetta Bolognesi, Ivana Marventano, Roberta Mancuso, Franca Rosa Guerini, Ambra Hernis, Lorenzo Agostino Citterio, Federica Piancone, Pietro Davide Trimarchi, Jorge Navarro, Federica Rossetto, Arianna Amenta, Pierfausto Seneci, Silvia Sesana, Francesca Re, Mario Clerici and Marina Saresella
Biomolecules 2025, 15(8), 1074; https://doi.org/10.3390/biom15081074 - 24 Jul 2025
Viewed by 224
Abstract
Background: Inflammasomes regulate the activation of caspases resulting in inflammation; inflammasome activation is dysregulated in Alzheimer’s disease (AD) and plays a role in the pathogenesis of this condition. Glibenclamide, an anti-inflammatory drug, could be an interesting way to down-modulate neuroinflammation. Methods: In this [...] Read more.
Background: Inflammasomes regulate the activation of caspases resulting in inflammation; inflammasome activation is dysregulated in Alzheimer’s disease (AD) and plays a role in the pathogenesis of this condition. Glibenclamide, an anti-inflammatory drug, could be an interesting way to down-modulate neuroinflammation. Methods: In this pilot study we verified with ex vivo experiments whether a glibenclamide-loaded nanovector (GNV) could reduce the NLRP3-inflammasome cascade in cells of AD patients. Monocytes isolated from healthy controls (HC) and AD patients were cultured in medium, alone or stimulated with LPS + nigericin in presence/absence of GNV. ASC-speck positive cells and inflammasome-related genes, proteins, and miRNAs expressions were measured. The polymorphisms of ApoE (Apolipoprotein E), specifically rs7412 and rs429358, as well as those of NLRP3, namely rs35829419, rs10733113, and rs4925663, were also investigated. Results: Results showed that ASC-speck+ cells and Caspase-1, IL-1β, and IL-18 production was significantly reduced (p < 0.005 in all cases) by GNV in LPS + nigericin-stimulated cells of both AD and HC. Notably, the NLRP3 rs10733113 AG genotype was associated with excessive inflammasome-related gene and protein expression. GNV significantly down-regulates inflammasome activation in primary monocytes, at least at protein levels, and its efficacy seems to partially depend on the presence of the NLRP3 rs10733113 genotype. Conclusions: All together, these results showed that GNV is able to dampen inflammation and NLRP-3 inflammasome activation in an ex vivo monocyte model, suggesting a possible role for GNV in controlling AD-associated neuroinflammation. Full article
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21 pages, 2094 KiB  
Article
Dysregulated Neuroimmune and Anhedonia-like Behavioral Response Following Peripheral Immune Challenge in Mice Carrying the Val66Met Brain-Derived Neurotrophic Factor Polymorphism
by Mustafa N. Mithaiwala, Allison M. Dugan, Miguel A. de la Flor, Sandeep K. Subramanian, Ashley Acheson and Jason C. O’Connor
Psychiatry Int. 2025, 6(3), 87; https://doi.org/10.3390/psychiatryint6030087 - 21 Jul 2025
Viewed by 294
Abstract
Dysregulated inflammatory processes contribute to depression, and gene–environment interactions may influence an individual’s risk and resilience. Reduced brain-derived neurotrophic factor (BDNF) expression increases susceptibility for developing depressive symptoms, and the Val66Met (rs6265) single-nucleotide polymorphism (SNP) on the BDNF gene is linked to mood [...] Read more.
Dysregulated inflammatory processes contribute to depression, and gene–environment interactions may influence an individual’s risk and resilience. Reduced brain-derived neurotrophic factor (BDNF) expression increases susceptibility for developing depressive symptoms, and the Val66Met (rs6265) single-nucleotide polymorphism (SNP) on the BDNF gene is linked to mood disorders. However, whether Val66Met confers increased vulnerability to inflammation-induced depressive tendencies is unknown. Here, we tested the hypothesis that the Val66Met SNP increases vulnerability to inflammation-induced depressive symptoms in a mouse model of lipopolysaccharide (LPS)-induced depression-like behavior. Behavior and neuroinflammation, following a 24 h LPS challenge, were measured in mice expressing the human BDNF Val66Met gene variant or Val66Val littermates (control). The Val66Met genotype did not affect the peripheral inflammatory response, acute neuroinflammation, or the acute sickness behavior response. Val66Met mice exhibited anhedonia-like behavioral responses following LPS challenge, and we found increased mRNA expression of IL-1β and TNFα in the cerebrum compared to controls. The mRNA expression of IL-1β and TNFα in the hippocampus and the nucleus accumbens of Val66Met mice was increased following LPS, and a significant genotype × LPS interaction was detected for CD68 expression in the nucleus accumbens. In summary, these data suggest that immune activation in Val66Met mice increased susceptibility to anhedonic behavior and dysregulated negative regulation of inflammation. Full article
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16 pages, 3066 KiB  
Article
TLR4 Asp299Gly SNP (rs4986790) Protects from Periodontal Inflammatory Destruction by Altering TLR4 Susceptibility to LPS Stimulation
by Franco Cavalla, Claudia C. Biguetti, Ariadne Letra, Renato M. Silva, Alexandre R. Vieira, Franz J. Strauss and Gustavo P. Garlet
Biology 2025, 14(7), 894; https://doi.org/10.3390/biology14070894 - 21 Jul 2025
Viewed by 225
Abstract
Periodontitis is a multifactorial disease linked to host immune response and genetic predisposition. The TLR4 Asp299Gly single-nucleotide polymorphism (SNP, rs4986790) has been associated with altered responses to bacterial lipopolysaccharide (LPS) and may influence susceptibility to inflammatory diseases. Given the central role of TLR4 [...] Read more.
Periodontitis is a multifactorial disease linked to host immune response and genetic predisposition. The TLR4 Asp299Gly single-nucleotide polymorphism (SNP, rs4986790) has been associated with altered responses to bacterial lipopolysaccharide (LPS) and may influence susceptibility to inflammatory diseases. Given the central role of TLR4 in innate immune recognition of periodontal pathogens, this study investigates the role of rs4986790 in modulating susceptibility to periodontal inflammatory destruction. A total of 1410 individuals from four populations were genotyped, with findings indicating a significant protective effect of the polymorphic allele. Functional assays demonstrated enhanced IL-8 secretion and increased sensitivity to CD14 inhibition in cells expressing the variant receptor. These results suggest that rs4986790 modifies the LPS response via TLR4, potentially offering protection against periodontal breakdown. Full article
(This article belongs to the Section Genetics and Genomics)
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12 pages, 1408 KiB  
Article
Association of Lipoprotein A rs10455872 Polymorphism with Childhood Obesity and Obesity-Related Outcomes
by Ayşen Haksayar, Mustafa Metin Donma, Bahadır Batar, Buse Tepe, Birol Topçu and Orkide Donma
Diagnostics 2025, 15(14), 1809; https://doi.org/10.3390/diagnostics15141809 - 18 Jul 2025
Viewed by 323
Abstract
Background/Objectives: Obesity is associated with cardiovascular disease worldwide. An increased lipoprotein A (LpA) level is an independent risk factor for cardiovascular disease in children. Genetic polymorphisms of the LPA gene may play an important role in susceptibility to obesity. The aim of this [...] Read more.
Background/Objectives: Obesity is associated with cardiovascular disease worldwide. An increased lipoprotein A (LpA) level is an independent risk factor for cardiovascular disease in children. Genetic polymorphisms of the LPA gene may play an important role in susceptibility to obesity. The aim of this study was to investigate the association of LPA rs10455872 polymorphism with the risk and clinical phenotypes of childhood obesity. Methods: This study included 103 children with obesity and 77 healthy controls. Genotyping of the LPA rs10455872 polymorphism was performed using real-time PCR. Results: The genotype distributions of the LPA rs10455872 polymorphism did not differ significantly between children with obesity and healthy children (p = 0.563). A marked difference in insulin levels was observed between children with obesity carrying the AG (16.90 IU/mL) and AA (25.57 IU/mL) genotypes. A marked difference was also observed in CRP levels between children with obesity with the AG (2.31 mg/L) and AA (4.25 mg/L) genotypes. After correcting for multiple comparisons using the false discovery rate (FDR), significant differences were found between AG and AA genotypes in vitamin B12 (adjusted p = 0.024). Serum iron showed a borderline association (adjusted p = 0.072). A statistically significant correlation was found between the metabolic syndrome index and body fat ratio among children with obesity with the AA genotype (p = 0.028). Conclusions: Although limited by the small number of children with obesity with the AG genotype, some differences were noted between the AG and AA genotypes. These exploratory findings require further investigation in adequately powered studies. In children with obesity with the AA genotype, the metabolic syndrome index increases as the body fat ratio increases. Full article
(This article belongs to the Special Issue Advances in Laboratory Markers of Human Disease)
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10 pages, 1189 KiB  
Communication
Oxidative Stress and Low-Grade Endotoxemia in Pediatric Acute-Onset Neuropsychiatric Syndrome (PANS) and Paediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections (PANDAS): Insights from a Cross-Sectional Study
by Chiara Maria Totè, Martina Capponi, Francesca Salvatori, Anna Maria Zicari, Cristiana Alessia Guido, Giulia Brindisi, Laura Iantorno, Simona Bartimoccia, Francesco Baratta, Maurizio Forte, Vittorio Picchio, Mariaelena Malvasi, Simone Aloisio, Elena Pacella, Pasquale Pignatelli, Francesco Violi, Roberto Carnevale, Alberto Spalice and Lorenzo Loffredo
Int. J. Mol. Sci. 2025, 26(13), 6336; https://doi.org/10.3390/ijms26136336 - 1 Jul 2025
Viewed by 461
Abstract
Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections (PANDAS), unlike pediatric acute-onset neuropsychiatric syndrome (PANS), is triggered by infections. This study aimed to assess the differences in low-grade endotoxemia and oxidative stress between these conditions. A cross-sectional study compared serum levels of soluble [...] Read more.
Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections (PANDAS), unlike pediatric acute-onset neuropsychiatric syndrome (PANS), is triggered by infections. This study aimed to assess the differences in low-grade endotoxemia and oxidative stress between these conditions. A cross-sectional study compared serum levels of soluble NOX2-dp (sNOX-2-dp), isoprostanes, lipopolysaccharide (LPS), and zonulin in 30 PANDAS, 21 PANS, and 30 control (CT) children matched for age and gender. Zonulin was used to assess gut permeability. Patients with PANDAS showed significantly higher serum levels of sNOX2-dp, isoprostanes, LPS, and zonulin than PANS and controls, while no significant differences were found between PANS and controls. sNOX2-dp correlated with isoprostanes (Rs = 0.708; p < 0.001), LPS (Rs = 0.584; p < 0.001), and zonulin (Rs = 0.662; p < 0.001). Multiple regression identified isoprostanes (β = 0.599; p < 0.001) and zonulin (β = 0.295; p = 0.01) as independent predictors of sNOX2-dp (R2 = 81%). PANDAS and PANS showed distinct profiles of LPS, zonulin, NOX2, and isoprostanes. Future research should explore therapies targeting endotoxemia and oxidative stress for potential clinical benefits. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
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15 pages, 1459 KiB  
Article
Effects of Selective α7 Nicotinic Acetylcholine Receptor Stimulation in Oligodendrocytes: Putative Implication in Neuroinflammation
by Claudia Guerriero, Giulia Puliatti, Tamara Di Marino, Giulia Scanavino, Carlo Matera, Clelia Dallanoce and Ada Maria Tata
Cells 2025, 14(13), 948; https://doi.org/10.3390/cells14130948 - 20 Jun 2025
Viewed by 618
Abstract
α7 nAChRs are known to modulate several physiological and pathological functions in glial cells, and their selective activation might have anti-inflammatory effects in the central and peripheral nervous system. OL progenitors (OPCs) respond to cholinergic stimuli via muscarinic receptors that are mainly involved [...] Read more.
α7 nAChRs are known to modulate several physiological and pathological functions in glial cells, and their selective activation might have anti-inflammatory effects in the central and peripheral nervous system. OL progenitors (OPCs) respond to cholinergic stimuli via muscarinic receptors that are mainly involved in the modulation of their proliferation. Conversely, the role of nicotinic receptors, particularly α7 nAChRs, has been poorly investigated. In this study, we evaluated the expression of α7 nAChRs in a model of OPCs (Oli neu) and the potential effects mediated by their selective activation. Methods: Oli neu cells were used as a murine immortalized OPCs model. The effects of α7 nAChRs stimulation on cell proliferation and survival were assessed by the MTT assay. RT-PCR and Western blot analysis were used to analyze the expression of α7 nAChRs and proliferative and differentiative markers (PCNA, MBP). LPS exposure was used to induce the environment in which the antioxidant and anti-inflammatory properties of α7 nAChRs were analyzed, evaluating NFR2 and TNF-α expression, ROS levels through DCFDA staining while Oil Red O staining was used for the analysis of lipid droplet content as a marker of cellular inflammation response. Results: The α7 nAChR is expressed both in OPCs and OLs, and its stimulation by the selective agonist ICH3 increases cell proliferation without modifying the OLs’ differentiation capability. Moreover, ICH3 showed anti-inflammatory and antioxidant effects against LPS exposure. Conclusions: The results herein obtained confirm the role of α7 nAChR in the modulation of neuroinflammatory processes as well as their protective effects on OLs. Full article
(This article belongs to the Special Issue Unveiling Axon-Glia Communication in Health and Disease)
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24 pages, 12263 KiB  
Article
Efficient Weight Ranking in Multi-Criteria Decision Support Systems
by Sebastian Lakmayer and Mats Danielson
Electronics 2025, 14(7), 1237; https://doi.org/10.3390/electronics14071237 - 21 Mar 2025
Cited by 2 | Viewed by 770
Abstract
There are well-known issues in conjunction with eliciting probabilities, utilities, and criteria weights in real-life decision analysis. This article explores various computationally efficient methods for generating weights in multi-criteria decision support systems. Therefore, it constitutes an aid for MCDA modellers and tool designers [...] Read more.
There are well-known issues in conjunction with eliciting probabilities, utilities, and criteria weights in real-life decision analysis. This article explores various computationally efficient methods for generating weights in multi-criteria decision support systems. Therefore, it constitutes an aid for MCDA modellers and tool designers in selecting surrogate methods for criteria weights. Given the challenges in eliciting precise criteria weights from decision-makers, this study evaluates a range of techniques for automatically generating surrogate weights, focusing on both ordinal and cardinal ranking approaches. With a thorough inquiry methodology never before used, we examine automatic multi-criteria weight-generating algorithms in this article. The methods tested include traditional rank-based models such as rank sum (RS), rank reciprocal (RR), and rank order centroid (ROC), alongside newer approaches like the sum reciprocal (SR) and cardinal sum reciprocal (CSR). The results show that the SR approach for the ordinal case and the CSR method for the cardinal case perform better in terms of robustness than other methods, even including the promising new geometric class of methods. It is also shown that linear programming (LP) performs poorly when compared to surrogate weight models. Additionally, as expected, the cardinal models perform better than the ordinal models. Unexpectedly, though, the well-established LP model’s performance is worse than previously thought. Full article
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14 pages, 2885 KiB  
Article
New Eye Drop Formulation Based on Desonide and Xanthan Gum in Dry Eye Disease: Nonclinical Studies
by Santa Viola, Luca Rosario La Rosa, Giuseppe De Pasquale, Manuela Santonocito, Donato Spina, Ilenia Abbate, Francesco Giuliano, Maria Cristina Curatolo, Maria Grazia Mazzone and Cristina Zappulla
Pharmaceutics 2025, 17(2), 235; https://doi.org/10.3390/pharmaceutics17020235 - 12 Feb 2025
Cited by 1 | Viewed by 1099
Abstract
Background/Objectives: A novel ophthalmic formulation, XanterDES, containing 0.2% xanthan gum and 0.025% desonide sodium phosphate (DES), was developed to alleviate ocular surface discomfort and irritation. This study aimed to evaluate its pharmacodynamic properties and to characterize its rheological behavior and mucoadhesive characteristics, compared [...] Read more.
Background/Objectives: A novel ophthalmic formulation, XanterDES, containing 0.2% xanthan gum and 0.025% desonide sodium phosphate (DES), was developed to alleviate ocular surface discomfort and irritation. This study aimed to evaluate its pharmacodynamic properties and to characterize its rheological behavior and mucoadhesive characteristics, compared to another formulation containing 0.2% hyaluronic acid and 0.001% hydrocortisone (HYD). Methods: A rabbit (New Zealand White) model of LPS-induced uveitis was used to test different concentrations of DES on ocular markers of inflammation. The efficacy of XanterDES and HYD on induced dry eye was evaluated by assessing tear volume and corneal damage in C57BL/6 mice exposed to a controlled environmental chamber. The rheological and mucoadhesive properties of XanterDES and HYD were assessed using a HAAKE RheoStress RS600 rheometer and a TA-XT2 texture analyzer, respectively. Results: In the uveitis model, unlike DES 0.25%, a low concentration of 0.025% DES showed a significant inhibitory activity localized to the eye surface and effectively reduced corneal edema. In the dry eye model, XanterDES demonstrated superior efficacy compared to HYD, effectively preventing both tear volume reduction and corneal damage. XanterDES also demonstrated pseudoplastic and enhanced mucoadhesive properties compared to HYD. Conclusions: The ancillary anti-inflammatory effects of a low dose of DES combined with the biophysical properties of xanthan gum are supportive of a favorable therapeutic profile, promoting the maintenance or restoration of ocular surface homeostasis while minimizing the risk of adverse effects typically associated with standard-dose corticosteroids. The comparison with another low-dose corticosteroid highlights the superiority of XanterDES in pharmacodynamic and biophysical performance. Full article
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13 pages, 813 KiB  
Article
Association of rs3798220 Polymorphism with Cardiovascular Incidents in Individuals with Elevated Lp(a)
by Dunja Leskovar Lemešić, Livija Šimičević, Lana Ganoci, Andrea Gelemanović, Nediljko Šućur and Ivan Pećin
Diagnostics 2025, 15(4), 404; https://doi.org/10.3390/diagnostics15040404 - 7 Feb 2025
Viewed by 1531
Abstract
Background/Objectives: Lipoprotein (a) [Lp(a)] plays a significant role in atherosclerosis and cardiovascular disease (CVD). Genetic regulation of Lp(a) involves variations in the apo(a) LPA gene, as specific polymorphisms like rs10455872 and rs3798220, both linked to higher Lp(a) levels and CVD. CVD remains [...] Read more.
Background/Objectives: Lipoprotein (a) [Lp(a)] plays a significant role in atherosclerosis and cardiovascular disease (CVD). Genetic regulation of Lp(a) involves variations in the apo(a) LPA gene, as specific polymorphisms like rs10455872 and rs3798220, both linked to higher Lp(a) levels and CVD. CVD remains the leading global cause of death, with high Lp(a) levels increasingly recognized as a significant factor in younger patients with no other CVD risk factors. We aimed to evaluate the association of LPA genetic variations with Lp(a) levels and its effect on cardiovascular risk as there are existing inconsistent findings. Methods: This case–control study included 251 subjects with a median age of 52 years (interquartile range, IQR = 17) and elevated Lp(a) levels. Cases were subjects who experienced early cardiovascular incidents (women < 65, men < 55 years old), and the control group included subjects without such history. Genotyping of LPA gene polymorphisms (rs10455872 and rs3798220) was performed, and demographic data with Lp(a) levels were collected. To evaluate the association between the LPA genotypes and the risk of cardiovascular incidents (CVI), several logistic regression models were performed. The cut-off points for Lp(a) levels were determined using diagnostic test accuracy measures. Results: The rs3798220-C allele was associated with higher Lp(a) levels (288 ± 166 nmol/L in cases vs. 189 ± 102 nmol/L in controls, p < 0.001) and myocardial infarction (53% in cases vs. 36% in controls, p = 0.036). Among cases, 28.9% carried the rs3798220-C allele, compared to 18.7% in controls. The rs10455872-G allele was slightly more prevalent in controls (34.15% vs. 29.69%) but without further significant associations. In this study, the cut-off Lp(a) value of 151 nmol/L, for patients with a positive family history of early CVD, is associated with a higher chance of developing CVI. Conclusions: This study demonstrates an association between the LPA rs3798220-C allele and higher Lp(a) levels, as well as an increased risk of early onset myocardial infarction. However, the obtained association should further be evaluated at a much larger scale. Full article
(This article belongs to the Special Issue Exploring the Role of Diagnostic Biochemistry)
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21 pages, 6973 KiB  
Article
Comprehensive Characterization and Impact Analysis of Interlayers on CO2 Flooding in Low-Permeability Sandstone Reservoirs
by Taskyn Abitkazy, Lin Yan, Khaled Albriki, Bahedaer Baletabieke, Dawei Yuan, Yingfu He and Akhan Sarbayev
Energies 2025, 18(3), 593; https://doi.org/10.3390/en18030593 - 27 Jan 2025
Cited by 1 | Viewed by 858
Abstract
In low-permeability sandstone reservoirs (LPSR), impermeable interlayers significantly challenge carbon capture, utilization, and storage (CCUS) and enhance oil recovery (CO2-EOR) processes by creating complex, discontinuous flow units. This study aims to address these challenges through a comprehensive multi-faceted approach integrating geological [...] Read more.
In low-permeability sandstone reservoirs (LPSR), impermeable interlayers significantly challenge carbon capture, utilization, and storage (CCUS) and enhance oil recovery (CO2-EOR) processes by creating complex, discontinuous flow units. This study aims to address these challenges through a comprehensive multi-faceted approach integrating geological and microscopic analyses, including core analysis, reservoir petrography, field emission-scanning electron microscopy (FE-SEM), energy dispersive spectroscopy (EDS), and well-logging response analysis, and utilizing three-dimensional (3D) geological modeling. The current comprehensive investigation systematically characterizes interlayer types, petrophysical properties, thickness, connectivity, and their spatial distribution in the reservoir unit. Numerical simulations were conducted to assess the sealing efficiency and the impact of various interlayer materials on CO2 flooding over a 10-year period. Results indicate the presence of petrophysical and argillaceous interlayers, with optimal sealing occurring in petrophysical barriers ≥ 4 m and argillaceous barriers ≥ 1.5 m thick. CO2 leakage occurs through preferential pathways that emerge in a side-to-middle and bottom-to-top direction in interbeds, with multidirectional pathways showing greater leakage at the bottom compared to the upper side within barriers. Increased interlayer thickness constraints CO2 breakthrough but reduces vertical flooding area and production ratio compared to homogeneous reservoirs. Augmented interbed thickness and area mitigate CO2 breakthrough time while constraining gravity override and dispersion effects, enhancing horizontal oil displacement. These novel findings provide crucial insights for optimizing CCUS-EOR strategies in LPSR, offering a robust theoretical foundation for future applications and serving as a key reference for CO2 utilization in challenging geological settings of LPSR worldwide. Full article
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11 pages, 1721 KiB  
Article
Disruptions of rpiAB Genes Encoding Ribose-5-Phosphate Isomerases in E. coli Increases Sensitivity of Bacteria to Antibiotics
by Tatyana A. Seregina, Rustem S. Shakulov, Svetlana A. Sklyarova and Alexander S. Mironov
Cells 2024, 13(22), 1915; https://doi.org/10.3390/cells13221915 - 19 Nov 2024
Viewed by 1253
Abstract
In Escherichia coli cells, the main enzymes involved in pentose interconversion are ribose-5-phosphate isomerases RpiA and RpiB and ribulose-5-phosphate epimerase Rpe. The inactivation of rpiAB limits ribose-5-phosphate (R5P) synthesis via the oxidative branch of the pentose phosphate pathway (PPP) and unexpectedly results in [...] Read more.
In Escherichia coli cells, the main enzymes involved in pentose interconversion are ribose-5-phosphate isomerases RpiA and RpiB and ribulose-5-phosphate epimerase Rpe. The inactivation of rpiAB limits ribose-5-phosphate (R5P) synthesis via the oxidative branch of the pentose phosphate pathway (PPP) and unexpectedly results in antibiotic supersensitivity. This type of metabolism is accompanied by significant changes in the level of reducing equivalents of NADPH and glutathione, as well as a sharp drop in the ATP pool. However, this redox and energy imbalance does not lead to the activation of the soxRS oxidative stress defense system but the increased sensitivity to oxidants paraquat and H2O2. The deletion of rpiAB leads to a significant increase in the activity of transketalase (Tkt), a key enzyme of the nonoxidative branch of the PPP and increased sensitivity to ribose added in the growth medium. The phenotype of supersensitivity of rpiAB to antibiotics and ribose can be suppressed by activating the utilization of sedoheptulose-7-phosphate, which originates from R5P, to LPS synthesis or limitation of nucleoside catabolism by the inactivation of the DeoB enzyme, responsible for conversion of ribose-1-phospate to R5P. Our results indicate that the induction of unidirectional synthesis of R5P is the cause of supersensitivity to antibiotics in rpiAB mutant. Full article
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21 pages, 9751 KiB  
Article
Strain-Specific Infection of Phage AP1 to Rice Bacterial Brown Stripe Pathogen Acidovorax oryzae
by Mengju Liu, Yang Zhang, Chunyan Gu, Jinyan Luo, Ying Shen, Xuefang Huang, Xinyan Xu, Temoor Ahmed, Hissah Abdulrahman Alodaini, Ashraf Atef Hatamleh, Yanli Wang and Bin Li
Plants 2024, 13(22), 3182; https://doi.org/10.3390/plants13223182 - 13 Nov 2024
Viewed by 1235
Abstract
Bacteriophage (phage) AP1 has been reported to effectively lyse Acidovorax oryzae, the causative agent of bacterial brown stripe in rice. However, phage AP1 exhibits strain-specific lysis patterns. In order to enhance the potential of phages for biological control of rice bacterial brown [...] Read more.
Bacteriophage (phage) AP1 has been reported to effectively lyse Acidovorax oryzae, the causative agent of bacterial brown stripe in rice. However, phage AP1 exhibits strain-specific lysis patterns. In order to enhance the potential of phages for biological control of rice bacterial brown stripe, this study investigated the possible mechanism of strain-specific infection by characterizing phage AP1 and its susceptible (RS-2) and resistant (RS-1) strains. Based on the current classification standards and available database information, phage AP1 was classified into the class Caudoviricetes, and it is a kind of podophage. Comparative analysis of the susceptible and resistant strains showed no significant differences in growth kinetics, motility, biofilm formation, or effector Hcp production. Interestingly, the resistant strain demonstrated enhanced virulence compared to the susceptible strain. Prokaryotic expression studies indicated that six putative structural proteins of phage AP1 exhibited varying degrees of binding affinity (1.90–9.15%) to lipopolysaccharide (LPS). However, pull-down assays and bacterial two-hybrid analyses revealed that only gp66 can interact with four host proteins, which were identified as glycosyltransferase, RcnB, ClpB, and ImpB through immunoprecipitation and mass spectrometry analyses. The role of LPS in the specific infection mechanism of phage AP1 was further elucidated through the construction of knockout mutant strains and complementary strains targeting a unique gene cluster (wbzB, wbzC, wbzE, and wbzF) involved in LPS precursor biosynthesis. These findings provide novel insights into the mechanisms of phage-host specificity, which are crucial for the effective application of phage AP1 in controlling rice bacterial brown stripe. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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12 pages, 271 KiB  
Article
A Conformal η-Ricci Soliton on a Four-Dimensional Lorentzian Para-Sasakian Manifold
by Yanlin Li, Arup Kumar Mallick, Arindam Bhattacharyya and Mića S. Stanković
Axioms 2024, 13(11), 753; https://doi.org/10.3390/axioms13110753 - 31 Oct 2024
Cited by 11 | Viewed by 859
Abstract
This paper focuses on some geometrical and physical properties of a conformal η-Ricci soliton (Cη-RS) on a four-dimension Lorentzian Para-Sasakian (LP-S) manifold. The first section presents an introduction to Cη-RS on LP-S manifolds, followed by a discussion of [...] Read more.
This paper focuses on some geometrical and physical properties of a conformal η-Ricci soliton (Cη-RS) on a four-dimension Lorentzian Para-Sasakian (LP-S) manifold. The first section presents an introduction to Cη-RS on LP-S manifolds, followed by a discussion of preliminary ideas about the LP-Sasakian manifold. In the subsequent sections, we establish several results pertaining to four-dimension LP-S manifolds that exhibit Cη-RS. Additionally, we consider certain conditions associated with Cη-RS on four-dimension LP-S manifolds. Besides these geometrical points of view, we consider this soliton in a perfect fluid spacetime and obtain some interesting physical properties. Finally, we present a case study of a Cη-RS on a four-dimension LP-S manifold. Full article
(This article belongs to the Special Issue Advances in Differential Geometry and Mathematical Physics)
13 pages, 1253 KiB  
Article
α4 Nicotinic Acetylcholine Receptors in Lipopolysaccharide-Related Lung Inflammation
by Jeffrey D. Ritzenthaler, Walter H. Watson and Jesse Roman
Int. J. Mol. Sci. 2024, 25(20), 11305; https://doi.org/10.3390/ijms252011305 - 21 Oct 2024
Viewed by 1488
Abstract
Sepsis remains an important healthcare challenge. The lungs are often affected in sepsis, resulting in acute lung injury characterized by inflammation. Mechanisms involving lipopolysaccharide (LPS) stimulation of toll-like receptor (TLR) signaling with induction of proinflammatory pathways have been implicated in this process. To [...] Read more.
Sepsis remains an important healthcare challenge. The lungs are often affected in sepsis, resulting in acute lung injury characterized by inflammation. Mechanisms involving lipopolysaccharide (LPS) stimulation of toll-like receptor (TLR) signaling with induction of proinflammatory pathways have been implicated in this process. To date, however, studies targeting these pathways have failed to improve outcomes. We have found that LPS may also promote lung injury through the activation of α4 nicotinic acetylcholine receptors (α4 nAChRs) in immune cells. We observed increased expression of α4 nAChRs in human THP-1 monocytic cells exposed to LPS (100 ng/mL, 24 h). We also observed that LPS stimulated the expression of other relevant genes, including tumor necrosis factor-α, interleukin-1β, plasminogen activator inhibitor-1, the solute carrier family 7 member 11, extracellular superoxide dismutase, and transforming growth factor-β1. Of interest, dihydro-β-erythroidine hydrobromide (DHβE), a specific chemical inhibitor of α4 nAChRs, inhibited the LPS-induced expression of these genes. We generated mice with a global knockout mutation of the α4 nAChR subunit in the C57BL/6 background using CRISPR/Cas9 technology. The lungs of these LPS-treated animals demonstrated a reduction in the expression of the above-mentioned genes when compared with the lungs of wild-type animals. In support of the role of oxidative stress, we observed that LPS induced expression of the cystine transporter Slc7a11 in both THP-1 cells and in wild-type mouse lungs. The effects of LPS on THP-1 cells were blocked by the thiol antioxidant N-acetylcysteine and mimicked by redox stress. Importantly, the induction of IL-1β by redox stress was inhibited by the α4 nAChR inhibitor DHβE. Finally, we showed that LPS stimulated calcium influx in THP-1 cells, which was blocked by the α4 nAChR inhibitor. Our observations suggest that LPS promotes lung injury by stimulating redox stress, which activates α4 nAChR signaling and drives proinflammatory cytokine expression. Full article
(This article belongs to the Special Issue Signaling in Respiratory Diseases)
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11 pages, 2054 KiB  
Article
Variants rs3804099 and rs3804100 in the TLR2 Gene Induce Different Profiles of TLR-2 Expression and Cytokines in Response to Spike of SARS-CoV-2
by Julio Flores-González, Zurisadai Monroy-Rodríguez, Ramcés Falfán-Valencia, Ivette Buendía-Roldán, Ingrid Fricke-Galindo, Rafael Hernández-Zenteno, Ricardo Herrera-Sicairos, Leslie Chávez-Galán and Gloria Pérez-Rubio
Int. J. Mol. Sci. 2024, 25(20), 11063; https://doi.org/10.3390/ijms252011063 - 15 Oct 2024
Cited by 2 | Viewed by 1575
Abstract
The present study aimed to identify in patients with severe COVID-19 and acute respiratory distress syndrome (ARDS) the association between rs3804099 and rs3804100 (TLR2) and evaluate the expression of TLR-2 on the cell surface of innate and adaptive cells of patients’ [...] Read more.
The present study aimed to identify in patients with severe COVID-19 and acute respiratory distress syndrome (ARDS) the association between rs3804099 and rs3804100 (TLR2) and evaluate the expression of TLR-2 on the cell surface of innate and adaptive cells of patients’ carriers of C allele in at least one genetic variant. We genotyped 1018 patients with COVID-19 and ARDS. According to genotype, a subgroup of 12 patients was selected to stimulate peripheral blood mononuclear cells (PBMCs) with spike and LPS + spike. We evaluated soluble molecules in cell culture supernatants. The C allele in TLR2 (rs3804099, rs3804100) is not associated with a risk of severe COVID-19; however, the presence of the C allele (rs3804099 or rs3804100) affects the TLR-2 ability to respond to a spike of SARS-CoV-2 correctly. The reference group (genotype TT) downregulated the frequency of non-switched TLR-2+ B cells in response to spike stimulus; however, the allele’s C carriers group is unable to induce this regulation, but they produce high levels of IL-10, IL-6, and TNF-α by an independent pathway of TLR-2. Findings showed that TT genotypes (rs3804099 and rs3804100) affect the non-switched TLR-2+ B cell distribution. Genotype TT (rs3804099 and rs3804100) affects the TLR-2’s ability to respond to a spike of SARS-CoV-2. However, the C allele had increased IL-10, IL-6, and TNF-α by stimulation with spike and LPS. Full article
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