Search Results (54)

Giant clams are ecologically important coral reef animals, with many species facing imminent local extinction. While many regions have undertaken recent assessments of their biodiversity assets, persistent gaps remain even in otherwise well-surveyed areas. This study sought to understand the geographic distribution of smaller-bodied and morphologically similar giant clams, specifically Tridacna maxima and T. noae, in the eastern Indian Ocean. Due to the difficulties in reliably identifying these species using morphological characters, we confirmed species identity and investigated intraspecific variation using sequence data from the mitochondrial cytochrome C oxidase subunit I gene (COI). Seventy whole animal vouchers were newly sampled from a 1500 km span of remote northwestern Australian coastline over a decade, as part of an ongoing coral reef survey expedition of the Western Australian Museum and partners. Tridacna maxima had a limited distribution and was only genotyped from offshore oceanic reefs in the Rowley Shoals and Cocos Keeling Islands. In contrast, T. noae was well established beyond Ningaloo Reef, and was abundant at inshore sites throughout the Pilbara and Kimberley, and even offshore to Ashmore Reef. Phylogeographically, T. maxima did not group with conspecifics from the Western Pacific Ocean, including the east coast of Australia, but instead clustered with individuals from Malaysia, China, Taiwan, and Indonesia; T. noae exhibited a similar pattern. The affinity of Western Australian individuals with representatives from the Indo-Malay region and not eastern Australia will be an important consideration for these commercially important species. Novel haplotypes in both tested species occur in Western Australia. Continued sampling of eastern and central Indian Ocean giant clams, especially to continue to document the range of T. noae, is encouraged to understand connectivity in this basin. Together, these findings contribute to an improved baseline for conservation initiatives of these iconic coral reef animals in Western Australia. Full article

A significant body of controlled laboratory research suggests different biological mechanisms by which the low-cost co-culture of seaweed and shrimp could improve sustainability whilst increasing income for the many poor pond farmers of South-East Asia. However, at the pond level, production and cost–benefit assessments remain largely lacking. Here, we studied the extensive co-culture of Gracilariopsis longissima seaweed and Penaeus monodon shrimp on pond production output, nutrient concentrations, and farm income on the north coast of Java, Indonesia. Co-culture showed 18% higher seaweed production during the first cycle (2261.0 ± 348.0 kg·ha⁻¹) and 27% higher production during the second (2,361.0 ± 127.3 kg·ha⁻¹) compared to monoculture. Shrimp production per cycle was 53.8% higher in co-culture (264.4 ± 47.6 kg·ha⁻¹) than in single-species cultivation (171.7 ± 10.4 kg·ha⁻¹). Seaweed agar content and gel strength did not differ between treatments, and neither did shrimp bacterial or heavy metals concentrations. The profit of co-culture was, respectively, 156% and 318% compared to single-species seaweed and shrimp cultivation. Co-cultivation lowered nutrient loading in the pond water and in the sediment and is argued to be a low-investment and environmentally friendly option for poor pond farmers to improve their income and financial resilience through product diversification. Full article

Temporary permeable structures of bamboo and brushwood have been implemented for mangrove restoration along retreating coastlines worldwide. However, deriving lessons from previous studies is inhibited by their lack of morphodynamic context, with missing bathymetric data or control comparisons. In this paper, we present a low-tech, low-cost, data collection methodology to support morphodynamic system understanding and modeling of mangrove coastlines. This method was applied to monitor a mangrove restoration project featuring temporary permeable structures of bamboo and PVC, installed in late 2021 on the subsiding muddy coast of Demak, Indonesia. Seabed level changes were regularly tracked with bathymetric surveys and monitoring poles across structures and at a nearby control site. Structures were positioned landward of a chenier, at −0.7 m to −0.9 m relative to mean sea level (MSL), and 30–70 m seaward of the mangrove fringe. Measurements from August 2021 to December 2022 revealed seabed erosion (−0.33 m to −0.4 m) seaward of the structures, with mixed responses landward: two sections eroded (−0.04 m to −0.05 m), one remained stable, and a creek-adjacent section eroded by −0.43 m. At the nearby control site, chenier migration and vertical growth promoted landward accretion, though elevations remained below MSL and thus unsuitable for mangrove colonization. The bathymetric and monitoring pole measurements presented in this study constitute valuable datasets for modeling studies aiming to unravel the dominant processes driving morphodynamic changes. Such models could also inform integrated approaches to mangrove restoration in subsiding coastlines, considering sediment supply, subsidence management, and structure integrity. Full article

The 2018 Sulawesi Earthquake and Tsunami serves as a backdrop for this work, which employs simple and straightforward remote sensing techniques to determine the extent of the destruction and indirectly evaluate the region’s vulnerability to such catastrophic events. Documenting damage from tsunamis is only meaningful shortly after the disaster has occurred because governmental agencies clean up debris and start the recovery process within a few hours after the destruction has occurred, deeming impact estimates unreliable. Sentinel-2 and Maxar WorldView-3 satellite images were used to calculate well-known environmental indices to delineate the tsunami-affected areas in Palu, Indonesia. The use of NDVI, NDSI, and NDWI indices has allowed for a quantifiable measure of the changes in vegetation, soil moisture, and water bodies, providing a clear demarcation of the tsunami’s impact on land cover. The final tsunami inundation map indicates that the areas most affected by the tsunami are found in the urban center, low-lying regions, and along the coast. This work charts the aftermath of one of Indonesia’s recent tsunamis but may also lay the groundwork for an easy, handy, and low-cost approach to quickly identify tsunami-affected zones. While previous studies have used high-resolution remote sensing methods such as LiDAR or SAR, our study emphasizes accessibility and simplicity, making it more feasible for resource-constrained regions or rapid disaster response. The scientific novelty lies in the integration of widely used environmental indices (dNDVI, dNDWI, and dNDSI) with threshold-based Decision Tree classification to delineate tsunami-affected areas. Unlike many studies that rely on advanced or proprietary tools, we demonstrate that comparable results can be achieved with cost-effective open-source data and straightforward methodologies. Additionally, we address the challenge of differentiating tsunami impacts from other phenomena (et, liquefaction) through index-based thresholds and propose a framework that is adaptable to other vulnerable coastal regions. Full article

In the context of planning and construction of the new capital city of Indonesia, referred to as Ibu Kota Negara (IKN), this article addresses the spatial risks and opportunities of rainwater resources in the area where IKN is planned. The article relies on an inventory of various physical data, which were used to derive a flood susceptibility map, as well as rainfall data derived from public and open sources. The geospatial study drew on geospatial software (ArcGIS Pro, 2.1.) and the Google Earth Engine platform (GEE). After this analysis, we followed a management design, which took IPCC climate change scenarios into account. The results demonstrated that the southern coast has higher precipitation than the northern coast in the IKN area. To enhance the efficacy of rainwater management planning, a grid is proposed to mitigate the flood risk and to harvest rainwater. Although rainwater varies throughout the IKN area, and may vary even more with different climate change predictions, it is possible to capture rainwater and create a system to reduce reliance on traditional water sources, alleviate stormwater runoff and mitigate the impact of urban flooding. While IKN will be developed by both regulated planning and other population-driven developments, monitoring and reflecting on existing plans will still be necessary to make IKN sufficiently resilient and sustainable. Full article

Rembang Regency is located on the north coast of Java Island, Central Java Province, Indonesia, which has many beaches ideal for tourism activities. Even though it has the charm of beaches, natural tourist destinations are still the primary choice compared to cultural and artificial sites. However, limited studies exist regarding standard indicators for assessing natural tourism potential in Rembang Regency, which is essential for identifying potential tourist locations. This research focuses on grouping indicators of natural tourism potential based on six main aspects: attractions, amenities, accommodation, activity, accessibility, and ancillary services, environment in tourist areas, and human resources considerations. A taxonomic model will be utilized to develop a procedure for determining natural tourism potential, including indicator weighing via a hierarchical analysis. The findings will yield a taxonomy model aiding information and knowledge management, fostering information sharing and utilization. Moreover, the established procedures will facilitate an accurate and efficient determination of natural tourism potential. This research aims to contribute to sustainable natural tourism management in Rembang Regency, preserving nature while enhancing the tourist experience. Full article

The genus Dichichthys was resurrected for five species previously allocated to the genus Parmaturus in the family Pentanchidae. Supraorbital crests on the chondrocranium distinguish Dichichthys from Parmaturus and other members of the family Pentanchidae. A new family, Dichichthyidae, has been proposed to contain Dichichthys. The sequence of the NADH2 mitochondrial gene confirms the placement of Dichichthys outside of the Pentanchidae family, as well as separate from the Atelomycteridae and Scyliorhinidae families. Dichichthys albimarginatus was described using a holotype collected off the coast of New Caledonia. A second juvenile specimen collected off the coast of Papua New Guinea was tentatively assigned as D. cf. albimarginatus. Dichichthys bigus is known from the holotype collected in the Coral Sea off the coast of Queensland, Australia. A new, parasite-afflicted underwater observation was reported further north of Queensland. The type species Dichichthys melanobranchus, previously only known from juvenile specimens, was redescribed based on adult specimens. Dichichthys nigripalatum is known from the holotype collected off Sumbawa, Indonesia, and a tentatively identified photo record from West Java. Dichichthys satoi n. sp. is described from the West Norfolk Ridge and off the North Island of New Zealand. Members of the genus Dichichthys have unique curved egg cases which have pliable ridges made up of numerous fibres and long coiled tendrils on the posterior end. Full article

The southern coast of Central Java Province is one of Indonesia’s largest eels (Anguilla spp.) fishing grounds. The annual eel catches in this region showed an increasing trend in 2011–2014 but then plummeted in 2019–2021. However, studies on stock status are lacking to provide an effective management plan to prevent the collapse of eel fisheries. Therefore, this study assessed the state of freshwater eels in Southern Central Java using a data-limited method, catch-based maximum sustainable yield (CMSY). The analysis revealed a swift stock depletion, shifting from a healthy state in 2011 to a concerning red zone in 2015–2018. Subsequently, the stock began a recovery phase in 2019, but the recent trajectory raised concerns as it approached the red zone again, signaling the urgency of implementing a rebuilding plan. The simulation of several rebuilding scenarios suggests that reducing fishing mortality to 80% of the F_MSY (maximum sustainable fishing mortality) can balance production and conservation objectives, achieving the quickest stock rebuilding with minimal catch loss. This study showed that eel stock could be rebuilt by reducing fishing pressure to preserve a surplus of individuals who can complete their migration and spawning cycles. Full article

In the paper, we analyze laser strainmeter data for the period from 2014 to 2022 to identify deformation anomalies that led to the generation of tsunamis in the area of the Japanese Islands. It is impossible to determine the main characteristics of a tsunami from the deformation anomaly registered by the laser strainmeter, but it is possible to calculate the seabed displacement in the epicenter of a tsunami formation, which causes the tsunami. We have established that the relationship between the registered deformation anomalies and the seabed displacement in the tsunami source in the area of the Japanese Islands is similar to the same relationships found in other regions of the Earth (Indonesia, Latin America, and the West Coast of North America). This result allows us to assert that such a relationship should be typical of any region of the Earth. The obtained results are aimed at solving the problem of reliable short-term tsunami forecasting, which allows for the avoidance of false alarms that lead to significant socio-economic damage. Full article

This paper investigates the wind wave deformations above two isolated shallow seamounts using a phase-resolved wave model simulation using the HAWASSI-AB software. The first seamount is located some 8 km from the south coast of Jawa, Indonesia, near Glagah, with its top area about 2 m from the water level, while the second is the Socotra Rock, in the East China Sea, which has a top 4.6 m under the sea surface. The simulations found that isolated shallow bathymetry may generate a crossing sea region endangering ships. In both domains, short-crested wave simulations of second order show strong refraction and diffraction effects when waves run towards and downstream of the top of the seamount. Waves near the summit embrace the seamount and form a focal area with larger waves downstream. After crossing the Socotra Rock, the interaction waves lead to a crossing sea in the deep water. On the other hand, having passed the Glagah, waves further downstream are partly absent over a substantial stretch of the coast. For both cases, the phase-resolved wave simulation results determine detailed wind wave conditions and wave spectra over the whole area, compensating for a lack of experimental data. Full article

This research aimed to identify water quality changes in the Cirata Reservoir and the factors affecting them in terms of hydrology and climate. The sampling was carried out in both the rainy and dry seasons at 12 locations in the Cirata Reservoir. The Mann–Whitney U-test (different test) results showed that salinity, total suspended solids (TSS), the potential of hydrogen (pH), nitrate (NO₃-N), phosphate (PO₄), nitrate and phosphate content in the sediment were significantly different (α < 0.05) between the rainy and dry seasons. The principal component analysis (PCA) results showed that the water quality characteristics in the Cirata Reservoir in the dry season were influenced by environmental conditions in the reservoir, especially by the floating cage aquaculture and climate conditions. The high solar radiation, low rainfall, and floating cage aquaculture increased the pH and amounts of dissolved oxygen (DO), ammonia (NH₃-N), PO₄, nitrate and phosphate in the sediment while decreasing transparency, salinity, TSS, and NH₃-N. During the rainy season, the high runoff from Citarum Watershed controlled the water quality characteristics of the Cirata Reservoir. In this season, transparency, salinity, pH, DO, NH₃-N, PO₄, nitrate and phosphate in the sediment increased, while TSS tended to be low. In general, the water volume addition decreased the nutrition and salinity concentration in the water body. However, a distinct phenomenon occurred in the Cirata Reservoir. The runoff from agriculture, settlement, livestock, and the Citatah Karst in the Upper Citarum Watershed increased nutrition and salinity in the reservoir. Land use in the Citarum Watershed and floating cage aquaculture had an important role in the reservoir water quality. Full article

Illegal, unreported, and unregulated fishing, including that of sharks, poses a significant threat to marine ecosystems and individual species. I use data from the media, tourists, and artisan fishermen to gain insight into the trade in the world’s largest fish, the whale shark (Rhincodon typus). I focus on the Indonesian island of Java where, along its south coast, whale sharks are landed and butchered on the beach in view of hundreds of people and local media. Whale sharks are typically caught in fishing nets and dragged alongside boats to the shallows, where they are butchered. The meat and oil (valued at ~USD 2000 per shark) are sold and distributed within the community. I document 58 landings of mainly immature whale sharks (2002–2022). Artisanal fishermen see the landing of whale sharks as a fortuitous event, but the species is protected, and Indonesia is a signatory to various international agreements that preclude the fishing of whale sharks. It is imperative for the conservation of whale sharks that the various parties in Indonesia adhere better to their own rules and regulations protecting this species. Full article

The rigorous assessment of volcanic hazards relies on setting contemporary monitoring observations within an accurate, longer-term geological context. Revealing that geological context requires the detailed fieldwork, mapping and laboratory analysis of the erupted materials. However, many of the world’s most dangerous volcanic systems are located on or near coasts (e.g., the Phlegraean Fields and Vesuvius in Italy), islands (e.g., the volcanic archipelagos of the Pacific, south-east Asia, and Eastern Caribbean), or underwater (e.g., the recently erupting Hunga Tonga–Hunga Ha’apai volcano), meaning that much of their erupted material is deposited on the sea bed. The only way to sample this material directly is with seafloor sediment cores. This perspectives paper outlines how marine sediment cores are a vital yet underused resource for assessing volcanic hazards by: (1) outlining the spatio-temporal scope of the marine volcanic record and its main deposit types, (2) providing existing examples where marine sediments have contributed to volcanic hazard assessments; (3) highlighting the Sunda Arc, Indonesia as an example location where marine sediment cores are yet to contribute to hazard assessments, and (4) proposing that marine sediment cores can contribute to our understanding of very large eruptions that have a global impact. Overall, this perspectives paper aims to promote the utility of marine sediment cores in future volcanic hazard assessments, while also providing some basic information to assist researchers who are considering integrating marine sediment cores into their volcanological research. Full article

This study aimed to obtain novel bioactive compounds derived from actinomycetes associated with marine biota from the coast of Indonesia. Actinomycetes have been identified as a potential source of bioactive compounds through enzymatic fermentation. In order to obtain bioactive compounds from the results of the biorefinery process, cultivation was performed by solid state fermentation (SSF) on shrimp shell waste medium. The inhibitory activity against pathogenic microorganisms was measured based on the optical density of samples from Gorontalo and Buleleng, Bali, Indonesia. Six isolates had a clear zone as an indicator of the chitinase activity of chitinase enzymes. The SSF extract, obtained after 14 days of incubation, was assayed for its antimicrobial activity by the 96-well plate microtiter method. Among the six isolates, isolate 19B19A1 had antibacterial and antifungal activity against Staphylococcus aureus and Malassezia globosa, respectively. DNA analysis indicated that the 19B19A1 isolate was Streptomyces tritolerans 19B19A1 and that its extract contained an alkaloid component that played a role in antimicrobial activity. These results indicate that shrimp shells can be used as a nutrient-rich alternative culture medium for actinomycetes. This study is expected to become a source of information related to biorefinery, especially in the exploration of bioactive compounds produced by actinomycetes. Full article

Plastic litter is increasingly accumulating in the marine environment, with rivers considered key pathways for entry. Current estimations of plastic input into the sea from land-based sources are limited in accounting for the mobilization and transport of plastic generated in the whole catchment area or in considering local variations in waste handling practices. Here, we show that, with an integrated discharge modeling approach (based on actual rainfall and local estimates for exposed mismanaged plastic waste), more realistic temporal estimates of plastic discharges into the sea can be constructed. Applying this approach to Indonesia enabled us to estimate the total national inputs of plastic waste into the sea from rivers and coasts and how these vary with rainfall, while providing insight into those catchments, local communities, and waste handling practices that most contribute to plastic waste leakages. We found that the plastic fluxes vary significantly in both the short and long term and that the total amount of plastic waste discharged during wet years may be twice as much as during dry years. Furthermore, river size, catchment population density, local waste management, and proximity of point sources influence river plastic waste loads. Such an integrated assessment can be very effective in helping to prioritize where interventions are most needed and, in combination with frequent monitoring, can provide evidence of the impact that upstream measures have on preventing plastic inputs into the sea. Full article