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17 pages, 1677 KB  
Article
Resistance to Triazoles in Populations of Mycosphaerella fijiensis and M. musicola from the Sigatoka Disease Complex from Commercial Banana Plantations in Minas Gerais and São Paulo, Brazil
by Abimael Gomes da Silva, Tatiane Carla Silva, Silvino Intra Moreira, Tamiris Yoshie Kiyama Oliveira, Felix Sebastião Christiano, Daniel Macedo de Souza, Gabriela Valério Leardine, Lucas Matheus de Deus Paes Gonçalves, Maria Cândida de Godoy Gasparoto, Bart A. Fraaije, Gustavo Henrique Goldman and Paulo Cezar Ceresini
Microorganisms 2025, 13(7), 1439; https://doi.org/10.3390/microorganisms13071439 - 20 Jun 2025
Viewed by 1326
Abstract
The sterol demethylation inhibitors (DMIs) are among the most widely used fungicides for controlling black Sigatoka (Mycosphaerella fijiensis) and yellow Sigatoka (Mycosphaerella musicola) in banana plantations in Brazil. Black Sigatoka is considered more important due to causing yield losses [...] Read more.
The sterol demethylation inhibitors (DMIs) are among the most widely used fungicides for controlling black Sigatoka (Mycosphaerella fijiensis) and yellow Sigatoka (Mycosphaerella musicola) in banana plantations in Brazil. Black Sigatoka is considered more important due to causing yield losses of up to 100% in commercial banana crops under predisposing conditions. In contrast, yellow Sigatoka is important due to its widespread occurrence in the country. This study aimed to determine the current sensitivity levels of Mf and Mm populations to DMI fungicides belonging to the chemical group of triazoles. Populations of both species were sampled from commercial banana plantations in Registro, Vale do Ribeira, São Paulo (SP), Ilha Solteira, Northwestern SP, and Janaúba, Northern Minas Gerais, and were further characterized phenotypically. Additionally, allelic variation in the CYP51 gene was analyzed in populations of these pathogens to identify and characterize major mutations and/or mechanisms potentially associated with resistance. Sensitivity to the triazoles propiconazole and tebuconazole was determined by calculating the 50% inhibitory concentration of mycelial growth (EC50) based on dose–response curves ranging from 0 to 5 µg mL−1. Variation in sensitivity to fungicides was evident with all nine Mf isolates showing moderate resistance levels to both propiconazole or tebuconazole, while 11 out of 42 Mm strains tested showed low to moderate levels of resistance to these triazoles. Mutations leading to CYP51 substitutions Y136F, Y461N/H, and Y463D in Mm and Y461D, G462D, and Y463D in Mf were associated with low or moderate levels of resistance to the triazoles. Interestingly, Y461H have not been reported before in Mm or Mf populations, and this alteration was found in combination with V106D and A446S. More complex CYP51 variants and CYP51 promoter inserts associated with upregulation of the target protein were not detected and can explain the absence of highly DMI-resistant strains in Brazil. Disease management programs that minimize reliance on fungicide sprays containing triazoles will be needed to slow down the further evolution and spread of novel CYP51 variants in Mf and Mm populations in Brazil. Full article
(This article belongs to the Special Issue New Methods in Microbial Research, 4th Edition)
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10 pages, 981 KB  
Article
Sensitivity Analysis of Pyrenophora tritici-repentis to Quinone-Outside Inhibitor and 14α-Demethylase Inhibitor Fungicides in Latvia
by Jānis Kaņeps, Biruta Bankina, Inga Moročko-Bičevska, Katrīna Apsīte, Ance Roga and Dāvids Fridmanis
Pathogens 2024, 13(12), 1060; https://doi.org/10.3390/pathogens13121060 - 2 Dec 2024
Cited by 2 | Viewed by 1389
Abstract
Tan spot caused by Pyrenophora tritici-repentis is a severe threat to wheat production in all major wheat-growing regions. Sustainable tan spot control can be achieved by an integrated approach, including responsible management of fungicide sprays. The data about the sensitivity of P. tritici-repentis [...] Read more.
Tan spot caused by Pyrenophora tritici-repentis is a severe threat to wheat production in all major wheat-growing regions. Sustainable tan spot control can be achieved by an integrated approach, including responsible management of fungicide sprays. The data about the sensitivity of P. tritici-repentis to various fungicides in the Baltic Sea region are rare. In this study, we described the variation of P. tritici-repentis sensitivity to four fungicide active ingredients to detect the formation of resistance to the most commonly used quinone-outside inhibitor (QoI) and 14α-demethylase inhibitor (DMI) fungicides in the pathogen’s population in Latvia. The effect of prothioconazole, mefentrifluconazole, pyraclostrobin, and azoxystrobin on 93 P. tritici-repentis strains from various hosts was tested in vitro by assessing mycelium linear growth inhibition at three different active ingredient concentrations (0 0.01, 0.1 and 0.5 mg L−1). Pathogen sensitivity significantly (p < 0.001) varied between the fungicide active ingredients and strains. The prothioconazole (concentration 0.5 mg L−1) had the most significant effect, with a median mycelial growth inhibition of 70.34%, followed by pyraclostrobin (47.02%), azoxystrobin (24.24%), and mefentrifluconazole (11.11%). Mutation G143A was detected in cytb gene sequences and confirmed the resistance formation in Latvia’s P. tritici-repentis population, while F129L and G137R mutations were absent. This study provided insight into P. tritici-repentis population’s sensitivity to active ingredients of DMI and OoI fungicide groups, helping to fill the knowledge gap about the pathogen fungicide sensitivity in this region. Full article
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18 pages, 4278 KB  
Article
Evaluation of Novel Picolinamide Fungicides (QiI) for Controlling Cercospora beticola Sacc. in Sugar Beet
by Akos F. Biró, Andy J. Leader, Andrea Hufnagl, Gábor Kukorelli and Zoltán Molnár
Horticulturae 2024, 10(11), 1202; https://doi.org/10.3390/horticulturae10111202 - 15 Nov 2024
Cited by 1 | Viewed by 2110
Abstract
Studies were initiated to find new effective fungicides to use under field conditions to discover novel approaches for optimizing disease management in sugar beet crops. Cercospora leaf spot (CLS), a prevalent foliar disease in sugar beet crops worldwide, is caused by the fungal [...] Read more.
Studies were initiated to find new effective fungicides to use under field conditions to discover novel approaches for optimizing disease management in sugar beet crops. Cercospora leaf spot (CLS), a prevalent foliar disease in sugar beet crops worldwide, is caused by the fungal pathogen Cercospora beticola Sacc. This disease has become the most prevalent pathogen in sugar beet crops across nearly all European growing regions, including Hungary. The epidemic spread of this disease can cause up to 50% yield loss. The use of fungicides has been a cornerstone in managing CLS of sugar beet due to the limited efficacy of non-chemical alternatives. However, the emergence of fungicide-resistant strains of Cercospora beticola Sacc. in recent decades has compromised the effectiveness of certain fungicides, particularly those belonging to the QoI (FRAC Group 11) and DMI (FRAC Group 3) classes. Hungary is among the many countries where resistance to these fungicides has developed due to their frequent application. Picolinamides represent a novel class of fungal respiration inhibitors targeting Complex III within the Quinoine-Inside Inhibitor (QiI) group. Two innovative fungicides from this class, fenpicoxamid and florylpicoxamid (both classified under FRAC Group 21), were evaluated for their efficacy in managing CLS of sugar beet in Hungary during the 2020 and 2021 growing seasons. Both fungicides were applied as formulated products at various application rates and demonstrated superior efficacy in controlling CLS compared to untreated control plots and the reference fungicides difenoconazole and epoxiconazole. The results consistently demonstrated that all tested application rates of fenpicoxamid and florylpicoxamid effectively controlled CLS in sugar beet, exhibiting a clear dose–response relationship. Disease severity, as measured by the area under the disease progress curve (AUDPC), was significantly correlated with yield reduction but showed no significant association with root sugar content. Moreover, data from both study years indicated that picolinamide fungicides applied at a rate of 75 g ai/ha significantly outperformed difenoconazole (100 g ai/ha) in controlling the CLS of sugar beet. Additionally, higher application rates of picolinamides at 100–150 g ai/ha outperformed epoxiconazole at 125 g ai/ha in disease suppression. Fenpicoxamid is currently registered for use in cereals within Europe, and outside of Europe in Banana against Black Sigatoka (eff. Mycosphaerella fijiensis). Florylpicoxamid, while not yet registered in Europe, is undergoing approval processes in various countries worldwide for a range of crops and is continually being evaluated for potential market introduction. Additional details regarding the efficacy of florylpicoxamid against CLS in sugar beet were presented at ‘The 10th International Conference on Agricultural and Biological Sciences (ABS 2024, Győr-Hungary)’ in 2024. Full article
(This article belongs to the Special Issue Plant–Microbial Interactions: Mechanisms and Impacts)
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16 pages, 1956 KB  
Article
In Vitro Assessment of Penicillium expansum Sensitivity to Difenoconazole
by Mohammed Khadiri, Hassan Boubaker, Abdelaaziz Farhaoui, Said Ezrari, Mohammed Radi, Rachid Ezzouggari, Fouad Mokrini, Essaid Ait Barka and Rachid Lahlali
Microorganisms 2024, 12(11), 2169; https://doi.org/10.3390/microorganisms12112169 - 28 Oct 2024
Cited by 1 | Viewed by 1681
Abstract
Penicillium expansum causes blue mold, a major post-harvest disease affecting apples. This disease is commonly managed using fungicides, including Difenoconazole (Dif), a demethylation inhibitor (DMI) approved for its control. This investigation aims to evaluate the baseline sensitivity of 100 P. expansum isolates to [...] Read more.
Penicillium expansum causes blue mold, a major post-harvest disease affecting apples. This disease is commonly managed using fungicides, including Difenoconazole (Dif), a demethylation inhibitor (DMI) approved for its control. This investigation aims to evaluate the baseline sensitivity of 100 P. expansum isolates to Difenoconazole. The isolates were collected from symptomatic apples in 34 storage warehouses across the Fes-Meknes and Draa-Tafilalet regions over three years (2020, 2021, and 2022). The study revealed an increase in the percentage of inhibition of mycelial growth and spore germination of P. expansum proportional to the increasing concentration of the fungicide. Moreover, the results indicate that 46 isolates were able to develop even at a concentration of 5 µg/mL of Dif (the suggested discriminatory dose), indicating reduced sensitivity to this fungicide. The analysis of the values of the effective concentration to inhibit 50% (EC50) of mycelial growth of P. expansum ranging from 0.027 to 1.673 µg/mL (mean: 0.263 µg/mL, variation factor: 62.507) and for spore germination from 0.0002 to 0.787 µg/mL (mean: 0.048 µg/mL, variation factor: 4113.835). The wide variation in EC50 values indicates significant variability in the isolates’ responses to Dif, likely due to diverse sampling in space and time. Our results showed that some P. expansum isolates could grow even at high concentrations of Dif, indicating limited efficacy of this treatment. The EC50 of five isolates exceeded 0.92 µg/mL, suggesting potential resistance. This study indicates reduced sensitivity and possible emergence of resistant strains. Notably, it is the first evaluation of P. expansum sensitivity to Dif in Morocco. Full article
(This article belongs to the Section Antimicrobial Agents and Resistance)
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15 pages, 6366 KB  
Article
Transcriptome Analysis Reveals Potential Regulators of DMI Fungicide Resistance in the Citrus Postharvest Pathogen Penicillium digitatum
by Yue Xi, Jing Zhang, Botao Fan, Miaomiao Sun, Wenqian Cao, Xiaotian Liu, Yunpeng Gai, Chenjia Shen, Huizhong Wang and Mingshuang Wang
J. Fungi 2024, 10(5), 360; https://doi.org/10.3390/jof10050360 - 18 May 2024
Cited by 3 | Viewed by 2422
Abstract
Green mold, caused by Penicillium digitatum, is the major cause of citrus postharvest decay. Currently, the application of sterol demethylation inhibitor (DMI) fungicide is one of the main control measures to prevent green mold. However, the fungicide-resistance problem in the pathogen P. [...] Read more.
Green mold, caused by Penicillium digitatum, is the major cause of citrus postharvest decay. Currently, the application of sterol demethylation inhibitor (DMI) fungicide is one of the main control measures to prevent green mold. However, the fungicide-resistance problem in the pathogen P. digitatum is growing. The regulatory mechanism of DMI fungicide resistance in P. digitatum is poorly understood. Here, we first performed transcriptomic analysis of the P. digitatum strain Pdw03 treated with imazalil (IMZ) for 2 and 12 h. A total of 1338 genes were up-regulated and 1635 were down-regulated under IMZ treatment for 2 h compared to control while 1700 were up-regulated and 1661 down-regulated under IMZ treatment for 12 h. The expression of about half of the genes in the ergosterol biosynthesis pathway was affected during IMZ stress. Further analysis identified that 84 of 320 transcription factors (TFs) were differentially expressed at both conditions, making them potential regulators in DMI resistance. To confirm their roles, three differentially expressed TFs were selected to generate disruption mutants using the CRISPR/Cas9 technology. The results showed that two of them had no response to IMZ stress while ∆PdflbC was more sensitive compared with the wild type. However, disruption of PdflbC did not affect the ergosterol content. The defect in IMZ sensitivity of ∆PdflbC was restored by genetic complementation of the mutant with a functional copy of PdflbC. Taken together, our results offer a rich source of information to identify novel regulators in DMI resistance. Full article
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31 pages, 5965 KB  
Article
Transcriptome Analysis of mfs2-Defective Penicillium digitatum Mutant to Reveal Importance of Pdmfs2 in Developing Fungal Prochloraz Resistance
by Rongrong Cuan, Shaoting Liu, Chuanyou Zhou, Shengqiang Wang, Yongliang Zheng and Yongze Yuan
Microorganisms 2024, 12(5), 888; https://doi.org/10.3390/microorganisms12050888 - 28 Apr 2024
Cited by 2 | Viewed by 2147
Abstract
Demethylation inhibitors (DMIs), including prochloraz, are popular fungicides to control citrus postharvest pathogens such as Penicillium digitatum (green mold). However, many P. digitatum strains have developed prochloraz resistance, which decreases drug efficacy. Specific major facilitator superfamily (MFS) transporter gene mfs2, encoding drug-efflux [...] Read more.
Demethylation inhibitors (DMIs), including prochloraz, are popular fungicides to control citrus postharvest pathogens such as Penicillium digitatum (green mold). However, many P. digitatum strains have developed prochloraz resistance, which decreases drug efficacy. Specific major facilitator superfamily (MFS) transporter gene mfs2, encoding drug-efflux pump protein MFS2, has been identified in P. digitatum strain F6 (PdF6) to confer fungal strain prochloraz resistance. However, except for the drug-efflux pump function of MFS2, other mechanisms relating to the Pdmfs2 are not fully clear. The present study reported a transcriptome investigation on the mfs2-defective P. digitatum strain. Comparing to the wild-type strain, the mfs2-defective strain showed 717 differentially expressed genes (DEGs) without prochloraz induction, and 1221 DEGs with prochloraz induction. The obtained DEGs included multiple isoforms of MFS transporter-encoding genes, ATP-binding cassette (ABC) transporter-encoding genes, and multidrug and toxic compound extrusion (MATE) family protein-encoding genes. Many of these putative drug-efflux pump protein-encoding genes had significantly lower transcript abundances in the mfs2-defective P. digitatum strain at prochloraz induction, as compared to the wild-type strain, including twenty-two MFS transporter-encoding genes (MFS1 to MFS22), two ABC transporter-encoding genes (ABC1 and ABC2), and three MATE protein-encoding genes (MATE1 to MATE3). The prochloraz induction on special drug-efflux pump protein genes in the wild-type strain was not observed in the mfs2-defective strain, including MFS21, MFS22, ABC2, MATE1, MATE2, and MATE3. On the other hand, the up-regulation of other drug-efflux pump protein genes in the mfs2-defective strain cannot recover the fungal prochloraz resistance, including MFS23, MFS26, MFS27, MFS31, MFS33, and ABC3 to ABC8. The functional enrichment of DEGs based on Kyoto Encyclopedia of Genes and Genomes (KEGG), Clusters of Orthologous Groups (COG), and euKaryotic Orthologous Groups (KOG) database resources suggested some essential contributors to the mfs2-relating prochloraz resistance, including ribosome biosynthesis-related genes, oxidative phosphorylation genes, steroid biosynthesis-related genes, fatty acid and lipid metabolism-related genes, and carbon- and nitrogen-metabolism-related genes. The results indicated that the MFS2 transporter might be involved in the regulation of multiple drug-efflux pump protein gene expressions and multiple metabolism-related gene expressions, thus playing an important role in developing P. digitatum prochloraz resistance. Full article
(This article belongs to the Special Issue Fungicide Resistance in Plant Pathogen)
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14 pages, 2088 KB  
Article
Exploring the Potential Mechanism of Prothioconazole Resistance in Fusarium graminearum in China
by Feng Zhou, Aohui Han, Yan Jiao, Yifan Cao, Longhe Wang, Haiyan Hu, Runqiang Liu and Chengwei Li
J. Fungi 2023, 9(10), 1001; https://doi.org/10.3390/jof9101001 - 10 Oct 2023
Cited by 11 | Viewed by 3111
Abstract
The Fusarium head blight (FHB) caused by Fusarium graminearum is one of the most important diseases threatening wheat production in China. However, the triazole sterol 14α-demethylation inhibitor (DMI), prothioconazole, is known to exhibit high activity against F. graminearum. The current study indicated [...] Read more.
The Fusarium head blight (FHB) caused by Fusarium graminearum is one of the most important diseases threatening wheat production in China. However, the triazole sterol 14α-demethylation inhibitor (DMI), prothioconazole, is known to exhibit high activity against F. graminearum. The current study indicated that three highly resistant laboratory mutants exhibited significantly (p < 0.05) altered growth and sporulation, although contrary to expectation, only one of the mutants exhibited reduced growth and sporulation, while the other two exhibited significant (p < 0.05) increases. Despite this, pathogenicity tests revealed that all of the mutants exhibited significantly (p < 0.05) reduced pathogenicity, indicating a substantial cost to fitness. Sequence analysis of the prothioconazole target protein, CYP51, of which F. graminearum has three homologues (FgCYP51A, FgCYP51B, and FgCYP51C), identified three mutations in the FgCYP51B sequence with a high likelihood of being associated with the observed resistance, as well as another three mutations in the FgCYP51B sequence, and two in the FgCYP51A sequence that are worthy of further investigation. Two of the prothioconazole-resistant mutants were also found to have several amino acid substitutions in their FgCYP51C sequences, and it was interesting to note that these two mutants exhibited significantly (p < 0.05) reduced pathogenicity compared to the other mutant. Expression analysis revealed that prothioconazole treatment (0.1 μg/mL) resulted in altered expression of all the FgCYP51 target genes, and that expression was also altered in the prothioconazole-resistant mutants compared to their wild-type parental isolates. Meanwhile, no evidence was found of any cross-resistance between prothioconazole and other commonly used fungicides, including carbendazim, pyraclostrobin, and fluazinam, as well as the triazole tebuconazole and the imidazole DMI prochloraz. Taken together, these results not only provide new insight into potential resistance mechanism in F. graminearum, and the biological characteristics associated with them, but also convincing evidence that prothioconazole can offer effective control of FHB. Full article
(This article belongs to the Special Issue Fusarium, Alternaria and Rhizoctonia: A Spotlight on Fungal Pathogens)
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11 pages, 866 KB  
Article
An Effective Hybrid Fungicide Containing Tea Tree Oil and Difenoconazole for Grape Powdery Mildew Management
by Moshe Reuveni, Cristobal J. Arroyo and Shmuel Ovadia
Agriculture 2023, 13(5), 979; https://doi.org/10.3390/agriculture13050979 - 28 Apr 2023
Cited by 9 | Viewed by 4805
Abstract
Grape powdery mildew caused by Erysiphe necator (Schw.) Burr. is a destructive disease in vineyards. Synthetic fungicides are the main tool to combat this disease. The search for new alternatives to reduce pesticide usage and tactical approaches for resistance management encouraged us to [...] Read more.
Grape powdery mildew caused by Erysiphe necator (Schw.) Burr. is a destructive disease in vineyards. Synthetic fungicides are the main tool to combat this disease. The search for new alternatives to reduce pesticide usage and tactical approaches for resistance management encouraged us to develop the novel strategy that we report here. We evaluated the efficacy of a new premixed hybrid fungicide containing the demethylation inhibitor (DMI) difenoconazole and essential tea tree oil (TTO), derived from the Melaleuca alternifolia plant, against grape powdery mildew in seven field trials and two large-scale demonstration trials conducted in two different regions in the world, including Chile and Israel. Foliar sprays of difenoconazole-TTO were applied as a preventive treatment in field trials at 40–80 up to 80–160 gr/ha active ingredient, and they were highly effective in controlling powdery mildew on the fruit clusters of both wine and table grapes in experimental and large-scale demonstration trials and provided up to 99% efficacy in disease incidence and severity compared with the untreated control. Difenoconazole-TTO was as or more effective than other DMI fungicides, including difenoconazole, a pre-mixed fungicide boscalid-pyraclostrobin, or treatments that included various fungicides applied in rotation or mixtures of fungicides. The results suggest that a combination of difenoconazole-TTO with a reduced synthetic chemical load can be included in powdery mildew control programs for grapevine as a strategic approach in fungicide resistance management in vineyards. Full article
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17 pages, 6779 KB  
Article
Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles
by Samara Nunes Campos Vicentini, Nichola J. Hawkins, Kevin M. King, Silvino Intra Moreira, Adriano Augusto de Paiva Custódio, Rui Pereira Leite Júnior, Diego Portalanza, Felipe Rafael Garcés-Fiallos, Loane Dantas Krug, Jonathan S. West, Bart A. Fraaije, Waldir Cintra De Jesus Júnior and Paulo Cezar Ceresini
Agronomy 2023, 13(5), 1238; https://doi.org/10.3390/agronomy13051238 - 27 Apr 2023
Cited by 15 | Viewed by 4272
Abstract
Wheat blast, caused by the ascomycetous fungus Pyricularia oryzae Triticum lineage (PoTl), is mainly controlled by fungicide use, but resistance to the main fungicide groups—sterol demethylase (DMI), quinone outside (QoI), and succinate dehydrogenase inhibitors (SDHI)—has been reported in Brazil. In order to [...] Read more.
Wheat blast, caused by the ascomycetous fungus Pyricularia oryzae Triticum lineage (PoTl), is mainly controlled by fungicide use, but resistance to the main fungicide groups—sterol demethylase (DMI), quinone outside (QoI), and succinate dehydrogenase inhibitors (SDHI)—has been reported in Brazil. In order to rationalize fungicide inputs (e.g., choice, timing, dose-rate, spray number, and mixing/alternation) for managing wheat blast, we describe a new monitoring tool, enabling the quantitative measurement of pathogen’s inoculum levels and detection of fungicide resistance alleles. Wheat blast airborne spores (aerosol populations) were monitored at Londrina in Paraná State, a major wheat cropping region in Brazil, using an automated high-volume cyclone coupled with a lab-based quantitative real-time PCR (qPCR) assay. The objectives of our study were as follows: (1) to monitor the amount of PoTl airborne conidia during 2019–2021 based on DNA detection, (2) to reveal the prevalence of QoI resistant (QoI-R) cytochrome b alleles in aerosol populations of wheat blast, and (3) to determine the impact of weather on the dynamics of wheat blast aerosol populations and spread of QoI resistant alleles. PoTl inoculum was consistently detected in aerosols during the wheat cropping seasons from 2019 to 2021, but amounts varied significantly between seasons, with highest amounts detected in 2019. High peaks of PoTl DNA were also continuously detected during the off-season in 2020 and 2021. The prevalence of QoI resistant (QoI-R) cytochrome b G143A alleles in aerosol populations was also determined for a subset of 10 PoTl positive DNA samples with frequencies varying between 10 and 91% using a combination of PCR-amplification and SNP detection pyrosequencing. Statistically significant but low correlations were found between the levels of pathogen and the weather variables. In conclusion, for wheat blast, this system provided prior detection of airborne spore levels of the pathogen and of the prevalence of fungicide resistance alleles. Full article
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19 pages, 4043 KB  
Article
Resistance of Black Aspergilli Species from Grape Vineyards to SDHI, QoI, DMI, and Phenylpyrrole Fungicides
by Stefanos I. Testempasis and George S. Karaoglanidis
J. Fungi 2023, 9(2), 221; https://doi.org/10.3390/jof9020221 - 7 Feb 2023
Cited by 6 | Viewed by 3493
Abstract
Fungicide applications constitute a management practice that reduces the size of fungal populations and by acting as a genetic drift factor, may affect pathogen evolution. In a previous study, we showed that the farming system influenced the population structure of the Aspergillus section [...] Read more.
Fungicide applications constitute a management practice that reduces the size of fungal populations and by acting as a genetic drift factor, may affect pathogen evolution. In a previous study, we showed that the farming system influenced the population structure of the Aspergillus section Nigri species in Greek vineyards. The current study aimed to test the hypothesis that the differences in the population structure may be associated with the selection of fungicide-resistant strains within the black aspergilli populations. To achieve this, we determined the sensitivity of 102, 151, 19, and 22 for the A. uvarum, A. tubingensis, A. niger, and A. carbonarious isolates, respectively, originating either from conventionally-treated or organic vineyards to the fungicides fluxapyroxad-SDHIs, pyraclostrobin-QoIs, tebuconazole-DMIs, and fludioxonil-phenylpyrroles. The results showed widespread resistance to all four fungicides tested in the A. uvarum isolates originating mostly from conventional vineyards. In contrast, all the A. tubingensis isolates tested were sensitive to pyraclostrobin, while moderate frequencies of only lowly resistant isolates were identified for tebuconazole, fludioxonil, and fluxapyroxad. Sequencing analysis of the corresponding fungicide target encoding genes revealed the presence of H270Y, H65Q/S66P, and G143A mutations in the sdhB, sdhD, and cytb genes of A. uvarum resistant isolates, respectively. No mutations in the Cyp51A and Cyp51B genes were detected in either the A. uvarum or A. tubingensis isolates exhibiting high or low resistance levels to DMIs, suggesting that other resistance mechanisms are responsible for the observed phenotype. Our results support the initial hypothesis for the contribution of fungicide resistance in the black aspergilli population structure in conventional and organic vineyards, while this is the first report of A. uvarum resistance to SDHIs and the first documentation of H270Y or H65Q/S66P mutations in sdhB, sdhD, and of the G143A mutation in the cytb gene of this fungal species. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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19 pages, 32853 KB  
Article
An Accurate, Affordable, and Precise Resazurin-Based Digital Imaging Colorimetric Assay for the Assessment of Fungicide Sensitivity Status of Fungal Populations
by Tatiane Carla Silva, Silvino Intra Moreira, Fabio Gomes Assis, Samara Nunes Campos Vicentini, Abimael Gomes Silva, Tamiris Yoshie Kitayama Oliveira, Félix Sebastião Christiano, Adriano Augusto Paiva Custódio, Rui Pereira Leite, Maria Cândida Godoy Gasparoto, Waldir Cintra de Jesus and Paulo Cezar Ceresini
Agronomy 2023, 13(2), 343; https://doi.org/10.3390/agronomy13020343 - 25 Jan 2023
Cited by 3 | Viewed by 4333
Abstract
This study aimed at the development and validation of an accurate, more affordable, and precise digital imaging resazurin-based fungicide sensitivity colorimetric assay (COL-assay) for fungal plant pathogens from the genera Mycosphaerella and Pyricularia. This proposed digital imaging assay was based on colorimetric [...] Read more.
This study aimed at the development and validation of an accurate, more affordable, and precise digital imaging resazurin-based fungicide sensitivity colorimetric assay (COL-assay) for fungal plant pathogens from the genera Mycosphaerella and Pyricularia. This proposed digital imaging assay was based on colorimetric estimates of resazurin reduction, which was used as a metabolic indicator of fungal respiration activity on microplate cultures. As fungal model systems, we used the yellow and black Sigatoka pathogens [Mycosphaerella musicola (Mm) and M. fijiensis (Mf), respectively] and the wheat blast pathogen, Pyricularia oryzae Triticum lineage (PoTl), which were previously characterized for QoI, DMI, and SDHI fungicide sensitivity. We then compared the classical spectrophotometry detection assay (SPEC-assay) with the proposed COL-assay based on the analyses of digital images of the microplates’ cultures captured with mobile phone cameras on a handmade trans-illuminator built for poorly equipped labs. Qualitatively, in terms of accuracy, there was full correspondence between the SPEC-assay and the COL-assay according to the fungal EC50 or the relative growth classes on QoI, SDHI, and DMI fungicides for both Mycosphaerella and Pyricularia pathogens. We also observed a strong to very strong correlation coefficient between the COL-assay and the SPEC-assay fungicide sensitivity values for the QoI azoxystrobin, the SDHI fluxapyroxad, and the DMI tebuconazole. Our conclusion was that the COL-assay had a similar accuracy as the SPEC-assay (i.e., resulted in similar fungicide-sensitivity categories for both resistant or sensitive fungal isolates) and high precision. By openly sharing here the COL-assay’s full methodology, and the blueprints of the handmade trans-illuminator, we foresee its adoption by poorly equipped labs throughout the country as an affordable venue for monitoring the fungicide resistance status of populations of important fungal plant pathogens such as M. fijiensis, M. musicola, and P. oryzae Triticum and Oryza lineages. Full article
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12 pages, 3482 KB  
Article
Involvement of CYP51A and CYP51B in Growth, Reproduction, Pathogenicity, and Sensitivity to Fungicides in Colletotrichum siamense
by Shuodan Hu, Jianyan Wu, Xiaoqi Yang, Wenfei Xiao, Hong Yu and Chuanqing Zhang
Agronomy 2023, 13(1), 239; https://doi.org/10.3390/agronomy13010239 - 13 Jan 2023
Cited by 8 | Viewed by 3433
Abstract
Strawberry crown rot is a serious fungal disease that poses a great threat to strawberry production in the growth cycle. The dominant pathogens of strawberry crown rot pathogens were different in different periods. The main pathogen of strawberry crown rot at the seedling [...] Read more.
Strawberry crown rot is a serious fungal disease that poses a great threat to strawberry production in the growth cycle. The dominant pathogens of strawberry crown rot pathogens were different in different periods. The main pathogen of strawberry crown rot at the seedling stage is unclear. In this study, 74 Colletotrichum spp. were isolated from 100 strawberry plants at the seedling stage. Based on the morphological observations and phylogenetic analysis of multiple genes (ACT, CAL, CHS, GAPDH, and ITS), all 74 tested isolates were identified as C. gloeosporioides species complex, including 69 isolates of C. siamense and 5 isolates of C. fructicola. Colletotrichum siamense is the main pathogen of strawberry crown rot at the seedling stage in Zhejiang, China. The sterol demethylation inhibitors (DMIs) were used to control strawberry crown rot, and their target was the CYP51 gene. The role of the homologous CYP51 gene in growth, reproduction, pathogenicity, and sensitivity to DMI fungicides in C. siamense has not been determined. Our study found that the pathogenicity of CsCYP51A deletion mutants to strawberry leaves and stems was weakened. The hyphae growth rate of CsCYP51B deletion mutants was significantly slower than that of the wild type, but the sporulation and appressorium production rates increased. CsCYP51B deletion mutants had significantly increased pathogenicity to the stem. Deletion of CsCYP51A led to increased sensitivity to prothioconazole, ipconazole, hexaconazole, triadimefon, prochloraz, tebuconazole, metconazole, propiconazole, and difenoconazole. CsCYP51B deletion mutants were more insensitive. Our results indicate that the effect of the homologous CsCYP51 gene on hyphae growth, pathogenicity, and sensitivity to DMI fungicides differs. Full article
(This article belongs to the Special Issue Plant Anthracnose: Etiology and Current Management Options)
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18 pages, 6263 KB  
Article
Status of Fungicide Resistance and Physiological Characterization of Tebuconazole Resistance in Rhizocotonia solani in Sichuan Province, China
by Changwei Gong, Min Liu, Dan Liu, Qiulin Wang, Ali Hasnain, Xiaoxu Zhan, Jian Pu, Yueyang Liang, Xuemei Liu and Xuegui Wang
Curr. Issues Mol. Biol. 2022, 44(10), 4859-4876; https://doi.org/10.3390/cimb44100330 - 13 Oct 2022
Cited by 15 | Viewed by 3065
Abstract
The resistance prevalence of chemical fungicides has caused increasingly serious agro-ecological environmental problems. However, there are few previous reports about resistance to succinate dehydrogenase (SDHI) or sterol demethylation inhibitor (DMI) in Rhizoctonia solani, one of the main agro-diseases. In this study, the [...] Read more.
The resistance prevalence of chemical fungicides has caused increasingly serious agro-ecological environmental problems. However, there are few previous reports about resistance to succinate dehydrogenase (SDHI) or sterol demethylation inhibitor (DMI) in Rhizoctonia solani, one of the main agro-diseases. In this study, the fungicide resistance of 122 R. solani isolates in Sichuan Province was monitored by the mycelial growth rate method. Results showed that all isolates were susceptible to hexaconazole and most isolates were susceptible to thifluzamide, except for the field isolate MSRS-2-7 due to a moderate resistance to thifluzamide (16.43-fold resistance ratio, RR), compared to the sensitivity baseline of thifluzamide (0.042 μg/mL EC50 values). On the contrary, many isolates showed moderate or high resistance to tebuconazole (10.59- to 60.78-fold RR), reaching EC50 values of 0.54~3.10 μg/mL, especially for a highly resistant isolate LZHJ-1-8 displaying moderate resistance to epoxiconazole (35.40-fold RR due to a 3.54 μg/mL EC50 value). The fitness determination found that the tebuconazole-resistant isolates showed higher fitness cost with these characteristics, including a lower growth rate, higher relative electric conductivity, an increased ability to tolerate tebuconazole, and high osmotic pressure. Four new mutations of cytochrome P450 sterol 14α-demethylase (CYP51), namely, S94A, N406S, H793R, and L750P, which is the target for DMI fungicides, was found in the tebuconazole-resistant isolates. Furthermore, the lowest binding energy with tebuconazole was also found in the LZHJ-1-8 isolate possessing all the mutations through analyses with Discovery Studio software. Therefore, these new mutation sites of CYP51 may be linked to the resistance against tebuconazole, and its application for controlling R. solani should be restricted in some areas. Full article
(This article belongs to the Special Issue Molecular Research on Oxidative Stress and Health)
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12 pages, 1338 KB  
Article
Efflux Pumps and Multidrug-Resistance in Pyricularia oryzae Triticum Lineage
by Samara Nunes Campos Vicentini, Silvino Intra Moreira, Abimael Gomes da Silva, Tamiris Yoshie Kiyama de Oliveira, Tatiane Carla Silva, Fabio Gomes Assis Junior, Loane Dantas Krug, Adriano Augusto de Paiva Custódio, Rui Pereira Leite Júnior, Paulo Eduardo Teodoro, Bart Fraaije and Paulo Cezar Ceresini
Agronomy 2022, 12(9), 2068; https://doi.org/10.3390/agronomy12092068 - 30 Aug 2022
Cited by 9 | Viewed by 3206
Abstract
Widespread resistance to QoIs, DMI and SDHIs fungicides has been reported for Brazilian populations of the wheat blast pathogen Pyricularia oryzae Triticum lineage (PoTl). A pre-existing resistance mechanism not associated with target site mutations has been indicated for resistance to DMIs [...] Read more.
Widespread resistance to QoIs, DMI and SDHIs fungicides has been reported for Brazilian populations of the wheat blast pathogen Pyricularia oryzae Triticum lineage (PoTl). A pre-existing resistance mechanism not associated with target site mutations has been indicated for resistance to DMIs and SDHIs, with strong indication that PoTl has multidrugresistance (MDR). Therefore, the main objective of this study was to test the hypothesis that resistance to DMI and SDHI fungicides detected in PoTl was due to efflux pump mediated MDR mechanism(s) by characterizing the sensitivity to antifungal efflux pump substrates. Four antifungal substrates were tested: tolnaftate (TOL), cycloheximide (CHX), rhodamine 6G (RH6G) and triphenyltin chloride (TPCL). TPCL and RH6G were considered the most relevant indicators for enhanced MDR activity. Among the 16 PoTl isolates tested, 9 were insensitive to TPCL, 1 to TOL, 16 to RH6G and 1 to CHX. The PoTl isolates were grouped into four distinct multidrug resistance phenotypes (MDRPs) based on resistance to combinations of fungicides and antifungal efflux pump substrates. Insensitivity to TPCL, RH6G and or TOL correlated well with DMI insensitivity, but MDR was not associated with SDHI resistance. The identification of multiple MDRP phenotypes associated with DMI resistance in our study warrants further research aimed at revealing the exact mechanisms of multidrug resistance in the wheat blast pathogen, including efflux pumps overexpression via transcriptomic analyses of differentially expressed genes; identification and discovery of mutations associated with changes in promoter regions or transcription factors of efflux transporters associated with multidrug resistance. Full article
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17 pages, 1578 KB  
Article
Management of Pyrenophora teres f. teres, the Causal Agent of Net Form Net Blotch of Barley, in A Two-Year Field Experiment in Central Italy
by Francesco Tini, Lorenzo Covarelli, Giacomo Ricci, Emilio Balducci, Maurizio Orfei and Giovanni Beccari
Pathogens 2022, 11(3), 291; https://doi.org/10.3390/pathogens11030291 - 24 Feb 2022
Cited by 13 | Viewed by 5623
Abstract
Pyrenophora teres is the causal agent of barley net blotch (NB), a disease that can be found in two different forms: net form (NFNB), caused by P. teres f. teres, and spot form (SFNB), caused by P. teres f. maculata. A [...] Read more.
Pyrenophora teres is the causal agent of barley net blotch (NB), a disease that can be found in two different forms: net form (NFNB), caused by P. teres f. teres, and spot form (SFNB), caused by P. teres f. maculata. A two-year field experiment was carried out to evaluate the response to NB of six different barley cultivars for malt or feed/food production. In addition, the efficacy of several recently developed foliar fungicides with different modes of action (SDHI, DMI, and QoI) towards the disease was examined. After NB leaf symptom evaluation, the identification of P. teres forms was performed. Grain yield was determined, and pathogen biomass was quantified in the grain by qPCR. In the two experimental years characterized by different climatic conditions, only P. teres f. teres was detected. The tested cultivars showed different levels of NFNB susceptibility. In particular, the two-row cultivars for malt production showed the highest disease incidence. All applied fungicides exhibited a high efficacy in reducing disease symptoms on leaves and pathogen accumulation in grains. In fact, high levels of fungal biomass were detected only in the grain of the untreated malting barley cultivars. For some cultivars, grain yield was positively influenced by the application of fungicides. Full article
(This article belongs to the Special Issue 10th Anniversary of Pathogens—Feature Papers)
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