Search Results (107)

Lactic acid bacteria (LAB) preserve many foods and play a vital role in fermented food products. This study designed a controlled biotechnological process of catfish (Clarias gariepinus) fermentation with a LAB starter culture isolated from corn hydrolysate. The BY (Barbu-Yelouassi) LAB strain was characterized regarding fermentative and antimicrobial potential, and its adaptability in the simulated gastrointestinal system (SGIS). After 10–12 h of cultivation on MRS broth (De Man Rogosa and Sharpe), the strain achieved the maximum exponential growth, produced maximum lactic acid (33.04%), and decreased the acidity up to pH 4. Also, the isolated strain showed increased tolerance to an acidic pH (3.5–2.0), high concentrations of salt (2–10%), and high concentrations of bile salts (≤2%). The behavior in SGIS demonstrated good viability after 2 h in artificial gastric juice (AGJ) (1 × 10⁷ CFU/mL) and up to 2 × 10³ CFU/mL after another 6 h in artificial intestinal juice (AIJ). The characterized BY strain was identified with the API 50CHL microtest (BioMerieux) as Lactiplantibacillus pentosus (Lbp. pentosus) (90.9% probability), taxon confirmed by genomic DNA sequencing. It was also demonstrated that Lbp. pentosus BY inhibited the growth of pathogenic bacteria, including Escherichia coli, Staphylococcus aureus, Listeria monocytogenes, and sporulated bacteria, such as Bacillus cereus. Additionally, it suppressed the sporulation of fungi like Aspergillus niger, Fusarium sp., and Penicillium sp. Furthermore, the Lbp. pentosus BY strain was used to ferment catfish, resulting in three variants of lanhouin (unsalted, with 10% salt, and with 15% salt), which exhibited good microbiological safety. Full article

The latest FAO report indicates that aquaculture accounts for 51% of the global production volume of fish and seafood. However, despite the continuous growth of this activity, there is evidence of the excessive use of groundwater in its production processes, as well as pollution caused by nutrient discharges into surface waters due to the water exchange required to maintain water quality in fishponds. Given this context, the objectives of this study were as follows: (1) to review which emergent and floating plant species are used in constructed wetlands (CWs) for the bioremediation of aquaculture wastewater; (2) to identify the aquaculture species whose wastewater has been treated with CW systems; and (3) to examine the integration of CWs with recirculating aquaculture systems (RASs) for water reuse. A systematic literature review was conducted, selecting 70 scientific articles published between 2003 and 2023. The results show that the most used plant species in CW systems were Phragmites australis, Typha latifolia, Canna indica, Eichhornia crassipes, and Arundo donax, out of a total of 43 identified species. These plants treated wastewater generated by 25 aquaculture species, including Oreochromis niloticus, Litopenaeus vannamei, Ictalurus punctatus, Clarias gariepinus, Tachysurus fulvidraco, and Cyprinus carpio, However, only 40% of the reviewed studies addressed aspects related to the incorporation of RAS elements in their designs. In conclusion, the use of plants for wastewater treatment in CW systems is feasible; however, its application remains largely at the experimental scale. Evidence indicates that there are limited real-scale applications and few studies focused on the reuse of treated water for agricultural purposes. This highlights the need for future research aimed at production systems that integrate circular economy principles in this sector, through RAS–CW systems. Additionally, there is a wide variety of plant species that remain unexplored for these purposes. Full article

Aquaculture has become a crucial component of global food production, yet catfish (10.8% of global finfish production) breeding programs often lack sufficient genetic data to fully utilize their production potential. In the last 15 years, there have been improvements in this field as two high-density (HD) single nucleotide polymorphism (SNP) arrays (250K and 690K) and low-density panels have been developed for North American channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). This lack of genomic tools hinders genetic improvement efforts in other commercially relevant catfish species besides them. Therefore, this review investigated the reason behind the lack of SNP chip usage in genetic-based selections in most catfish breeding programs and the cross-species applicability of the already existing high-density SNP arrays for genotyping members of the Clariidae, African catfish (Clarias gariepinu), and Siluridae, European catfish (Silurus glanis), families. This paper systematically reviews the literature of more than 16 SNP arrays, with 66 non-target species, and assesses the possibility of adapting catfish SNP arrays to the catfish families of interest. With lowered filtering (e.g., MAF > 0) thresholds, the Affymetrix Axiom 250K and Axiom Catfish 690K Genotyping Array could potentially be used on important market species like African and European catfishes. In the long term, chip development would be the solution for these species, but, until then, cross-application is a viable alternative. Despite low polymorphic SNPs (~1%) and call rates (~0%), this SNP array could aid researchers and breeders, improving catfish aquaculture and management. Full article

The African catfish, Clarias gariepinus, is among the most farmed fish species in Uganda’s rapidly growing aquaculture sub-sector. The enhanced growth performance, increased survival, and resilience to environmental stressors have driven a rising demand among farmers for improved African catfish broodstock and seed. Until recently, most studies of this species have focused on nutrition, physiology, and culture systems, with little known about the genetics, broodstock, and hatchery management of the cultured C. gariepinus populations. This knowledge gap has led to inbreeding depression, resulting in poor seed quality and reduced performance of the broodstock. To enhance catfish aquaculture production, a survey was conducted across multiple catfish hatcheries and farms in Uganda. Using semi-structured questionnaires, the study assessed broodstock management practices, hatchery propagation methods, the suitability of various populations, demographics, challenges, and prospects of hatchery operators. Responses were coded, and descriptive statistics such as frequency, percentages, and means were calculated. Results indicate that there are farmers who continue to source their broodstocks from the natural water bodies in addition to acquiring them from fellow farmers. The estimated effective population size (Ne) for the majority of the respondents was 133.33 and 178.22, with an average breeding coefficient of 0.4% and 0.3%, respectively. There is also a continuous use of shooters (fast-growing cannibalistic fish) by the farmers who hatch and select them to be used as broodstocks later, under the assumption that they have superior genetic traits. The reported hatchability rate was above 70%, with an average survival rate of 60% from larvae to fry. The study identified diseases, inadequate water supply, and electricity as the primary challenges for catfish breeding. While Uganda’s African catfish aquaculture industry is expanding rapidly, certain hatchery practices pose significant risks to its sustainability if not properly addressed. Full article

Growth traits are critical economic characteristics in aquaculture. This study aimed to identify the candidate genes associated with the growth of C. fuscus by integrating QTL mapping for growth traits and the RNA-seq analysis of differentially expressed genes (DEGs) between two extreme body size groups (big-sized group and small-sized group). QTL mapping was performed on eight growth traits—body weight, body height, body length, body width, orbital diameter, caudal peduncle length, caudal peduncle height, and pre-dorsal length—using 200 individuals from a full-sibling line. Seventeen growth-related QTL were identified across eight linkage groups, explaining phenotypic variance ranging from 8.00% to 11.90%. A total of 162 functional genes were annotated within these QTL intervals. RNA-seq analysis identified 3824 DEGs between the big-sized and small-sized groups, with 2252 genes upregulated and 1572 downregulated in the big group. By integrating QTL mapping and RNA-seq data, 27 candidate genes were identified, including myostatin (mstnb), epidermal growth factor receptor (egfr), and sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (serca1). These findings provide crucial insights into the genetic regulation of growth in C. fuscus and lay a foundation for future genetic selection strategies. Full article

The impact of short-term feeding of three distinct diets containing insect meals on the intestinal microbiota of African catfish hybrid (Clarias gariepinus × Heterobranchus longifilis) juveniles was examined. The animals received experimental diets containing 30% insect meals derived from black soldier-fly larvae (BSL) (Hermetia illucens), yellow mealworm (Tenebrio molitor) or blue bottle-fly larvae (Calliphora vicina) for 18 days. The relative abundance of the Bacillaceae, the Planococcaceae and other bacteria significantly increased (p < 0.05) in the intestinal microbiota of the BSL group and also in the pooled group of the three catfish groups that received insect meals. Several strains of the Bacillales cultured from BSL feed had higher (p < 0.05) abundance in the intestinal microbiota of the BSL group compared to those of the control group. Among these Bacillales strains, a single fosB antibiotic resistance gene was identified. In the gut resistomes of both the BSL and the control catfish groups, the tetA(P), tetB(P) and lnu(C) antibiotic-resistance determinants were detected, while fosB was detected only in the BSL group. Overall, the study showed that a short-term shift to diets containing insect meals can induce significant (q < 0.05) changes in the gut microbiota of the African catfish without the development of reduced α-diversity and without the overgrowth of bacteria pathogenic to fish. Full article

This study evaluated the effects of dietary dill weed (DW) on growth, hematological profile, digestive enzyme activities, antioxidative response, heat tolerance, gut microbiota composition, and disease resistance in African catfish (Clarias gariepinus). A control diet (basal diet) was compared to three DW diets (DW5, DW10, and DW15) with increasing DW levels (0.5, 1.0, and 1.5%, respectively). After eight weeks, fish fed DW diets exhibited significantly higher growth performance (p < 0.05) compared to the control group, as evidenced by increased final weight (FW), specific growth rate (SGR), and weight gain (WG). Conversely, the feed conversion ratio (FCR), hepatosomatic index (HSI), and visceral somatic index (VSI) were significantly lower (p < 0.05) in fish fed DW diets compared to the control. Dietary DW supplementation significantly enhanced (p < 0.05) hematological profiles, including red blood cell (RBC), white blood cell (WBC), hematocrit (HCT), and hemoglobin (HBG), compared to the control group. Similarly, antioxidant responses, including superoxide dismutase (SOD), glutathione peroxidase (GPx), and catalase (CAT) activity, significantly increased (p < 0.05) in fish fed DW diets before or after the heat tolerance assay. Fish fed DW diets displayed a higher relative abundance of beneficial gut microbiota, including Cetobacterium spp., Akkermansia muciniphila, Phocaeicola spp., and Niameybacter massiliensis. Furthermore, dietary DW supplementation stimulated disease resistance against Edwardsiella tarda infection in African catfish. Regression analysis indicated that the optimal DW inclusion level for promoting growth performance and health status in African catfish ranged from 0.229 to 0.433%. Full article

Global climate change presents a significant challenge to aquatic ecosystems, with ectothermic fish being particularly sensitive to temperature fluctuations. The brain plays a crucial role in perceiving, regulating, and adapting to thermal changes, and its response to heat stress is crucial for survival. However, the molecular mechanisms underlying heat stress and acclimation in fish brains remain poorly understood. This study aimed to investigate the adaptive mechanisms of Hong Kong catfish (Clarias fuscus) brains under heat acclimation and acute heat stress using transcriptome analysis. Fish were divided into two groups: a normal temperature group (NT, 26 °C for 90 days) and a heat-acclimated group (HT, 34 °C for 90 days), followed by acute heat stress (34 °C for 72 h) and recovery (26 °C for 72 h). Heat acclimation improved C. fuscus tolerance to acute heat stress, with faster gene responses and stronger neuroprotection. Key pathways enriched included cell adhesion and ECM-receptor interactions during recovery. Apoptosis regulation was balanced, with the HT group upregulating anti-apoptotic genes to mitigate neuronal cell death. Additionally, the lysosome–phagosome pathway was activated during recovery, facilitating the transport of lysosomal enzymes and the clearance of damaged cellular components, aiding neuronal repair. Ribosome biogenesis was suppressed under heat stress to conserve energy, but this suppression was less pronounced in the HT group. In summary, heat acclimation enhances neural protection in C. fuscus brains by promoting neuronal repair, suppressing apoptosis, and activating lysosomal pathways, thereby improving tolerance to acute heat stress. These findings offer a molecular basis for breeding heat-tolerant fish species in aquaculture, and deepen our understanding of thermal adaptation in aquatic animals amid global climate change. Full article

Non-native fish species introduced into new areas, especially when they develop into large populations, pose a threat to native fauna. Understanding the current status of the fish community and invasion risks of non-native fish are essential for invasive species control and diversity conservation. The community structure of fish and a risk assessment on 10 non-native fish species were systematically assessed in the Jiulong River Basin, China, in January, April, and July of 2024. The species richness, with 105 species, showed a notable decrease compared to the 124 species recorded in 1975, while the number of non-native species has increased from zero to ten. Furthermore, the non-native fish species, Coptodon zillii and Sarotherodon galilaeus, have become dominant species, with IRI values of 4038.43 and 1180.30, respectively. The AS-ISK established risk thresholds for BRA and BRA + CCA as 29.5 and 35.5, respectively, identifying 70% of the non-native fish species as high-risk species, including C. zillii, S. galilaeus, Oreochromis niloticus, Clarias batrachus, Hypostomus plecostomus, and Oreochromis aureus. This study indicates that the fish species richness in the Jiulong River Basin has declined, with C. zillii and S. galilaeus becoming dominant and posing high ecological risks to the native fish community. In addition, targeted fishing during the breeding season should be used to control the population of tilapia and restore fish diversity. Full article

In the Upper Congo Basin, there are few records of monopisthocotylan parasites from clariids. More surveys of clariid fishes can lead to the discovery of multiple monopisthocotylan species that are new to the region or new to science. We aimed to investigate the monopisthocotylan parasite fauna belonging to Quadriacanthus of five clariid fishes in the Upper Congo Basin by (i) inventorying the species composition and providing the description of new species when necessary, and (ii) analysing their infection parameters. Clarias ngamensis, C. stappersii, C. buthupogon, C. gariepinus and C. theodorae were purchased from fishermen in the Lufira, Lubumbashi and Kafubu rivers in the Upper Congo Basin. Monopisthocotylans were mounted on glass slides with ammonium picrate-glycerin for identification based on morphological analysis of genital and haptoral sclerotised parts. Eight species, namely Q. aegypticus, Q. allobychowskiella, Q. amakaliae, Q. domatanai, Q. halajiani, Q. kalomboi n. sp., Q. bassocki n. sp. and Q. shigoleyae n. sp. are reported. The most prevalent parasite species was Q. amakaliae on C. stappersii (prevalence 60%) with a mean infection intensity of 9.8 ± 7.7. We report C. stappersii and C. buthupogon as new hosts for species of Quadriacanthus as well as three new parasite species for science and new localities for the first five parasite species mentioned above. The new records and the description of Q. kalomboi n. sp., Q. bassocki n. sp. and Q. shigoleyae n. sp. increase the knowledge of the diversity of monopisthocotylans in this region. Full article

The sub-Saharan region shows fast growth in aquaculture, but current production is dominated by two species, the African catfish and tilapia. In order to support the expansion of the industry and ensure food resilience of the sector, diversification is desirable. Indeed, several candidates have been identified, among them the African snakehead Parachanna obscura. In contrast to the fast expansion of Asian snakehead farming, African aquaculture does not anticipate this trend. Still, looking at Asia, recent scientific literature provides impulses and solutions for the most pressing problems such as dry feed, cannibalism of juvenile stages and reproduction. In this review, we illustrate future research needs, integrating the recent progress in snakehead farming. Based on the recent progress in commercial diets in Clarias and protocols established for the reproduction of Channa species, an expansion of African snakehead farming seems feasible in the near future. Full article

Probiotics, due to their multifaceted benefits to the host, are essential in medicine, agriculture, and aquaculture. The mechanisms of their action at the molecular level are complex and less explored. Both previous research and our own investigations have highlighted that incorporating probiotics into the feed of commercial fish can increase growth and influence the expression of genes related to stress and immunity. Additionally, probiotics with antioxidant properties often exert systemic effects. The aim of this work was to explore possible mechanisms of probiotic effects on stress-related proteins in African catfish C. gariepinus using molecular docking and dynamics approaches. Stress biomarker proteins such as catalase, cytochrome P450, HSP70, metallothionein 1, and superoxide dismutase were evaluated for possible interactions with bioactive non-ribosomal peptides (NRPs) from Bacillus subtilis R5, used as ligands. The study involved molecular docking and dynamics interactions between proteins and NRPs. The results of molecular docking and dynamics reveal multiple bindings between proteins and ligands, forming stable complexes, which may explain the mechanisms of action of probiotics and their particularly positive effects, such as the reduction in stress levels, which was demonstrated in the clarium catfish model in our previous work. Non-ribosomal peptides synthesized by probiotics may influence key signalling pathways underlying antioxidant and antimutagenic properties. Full article

Fish holes called “whédos” are excavations performed near water bodies or in the flood plains of Beninese rivers in Africa for rearing fish. During floods, they are filled and naturally colonized by various fish that remain trapped during recessions. This literature review examines fishing, aquaculture, and fish reared in traditional holes in Benin. It reports on cartography, characterization, socioeconomic aspects, challenges, and status of improvement, and proposes prospects for improving this system. Peer reviews and gray literature were used to conduct the analysis. Our review highlights 19 papers reporting on 17 whédos aquaculture experiences based on the exclusion or inclusion criteria. These results indicate that many genera can be reared in whédos, suggesting that whédos offer the possibility of going beyond the production of Clarias and Tilapia in Africa. Furthermore, the exploitation of the whédos system is fairly profitable for fishermen and their households, at approximately US$ 1713 per household annually, used to finance agricultural activities, children’s education, schooling, mitigating farmers’ vulnerability to climate risks, and health care. However, in the past two decades, there has been a significant decline in the quantity of fish collected owing to the adverse effects of hydroclimatic changes, such as floods and prolonged droughts. Moreover, water eutrophication or pollution, the risk of climate change, and fishing methods have affected crop yield over the years. The implementation of Integrated Multi-Trophic Aquaculture or Integration Agriculture-Aquaculture in whédos systems can be an effective solution for improving profitability and sustainability. The knowledge gained from this review perspective should be helpful in directing future initiatives to grow and sustain this sector of the economy and to optimize its potential to provide food for future generations. Full article

The purpose of this study was to investigate the effect of the addition of graphene (G) and graphene oxide (GO) to polyethylene film on the lipid oxidation level and sensory quality of African catfish fillets during refrigerated storage. The study was conducted on de-skinned fillets from a local farm. A composite film with 0.1%, 0.6%, and 1% G nanoplatelets and 0.1% GO nanoplatelets was used to package the fillets. The film was obtained using the free-blowing vertical upward method. The fillets were stored in polyethylene bags at 4 °C, and tests were conducted on the day of packaging and after 3, 7, 10, and 14 days of refrigerated storage. The peroxide number, anisidine number, and Totox index were determined in the extracted lipids using the Bligh and Dyer method. Sensory analysis of the fillets was carried out using the spot method and sensory profiling. Global migration for the film was also investigated. After 14 days, fillets packaged in the plain film exhibited, on average, 50%–100% higher lipid oxidation indices than those packaged in the film with G and GO. The film with 1% G and 0.1% GO additive showed the best properties for retarding the formation of aldehydes and ketones in lipids during fillet storage. There was no significant effect of the addition of nanomaterials to the film on the sensory quality of the fillets. The global migration did not exceed the allowed limit of 10 mg/dm² for any of the films. Composite films with nanomaterials have great potential as packaging in slowing down oxidation processes in foods. Full article

The potential probiotic properties of three Bacillus strains were studied. A probiotic supplement for the African catfish Clarias gariepinus was produced via the solid-state fermentation protocol and incorporated into the fish feed for a period of seven weeks. Since the 36th day of the experiment, all experimental groups had a statistically significant increase in their weight gain than the control group. The maximum weight gain observed in fish fed the probiotic-supplemented feed was 29.16% higher than that of the control group, and the maximum feed conversion rate improvement was 24%. Cell-free extracts from these strains showed antioxidant (11.55–27.40%) and DNA-protective (45.33–61.83%) activity in a series of in vitro biosensor tests. Further investigation into the antimutagenic activity of the strains revealed that two of them reduced the level of induced mutagenesis in an Escherichia coli model (by 33.58% and 54.35%, respectively). We also assessed the impact of probiotic strains on the expression of several key genes in the host (C. gariepinus), including hsp70, cxc, tnfα, il1β, and lysC. More than a 10-fold increase in expression rates was observed for hsp70 in gonads and liver; for cxc in muscles and gonads; for tnfα in brain, gills, and liver; for il1β in the brain, gills, gonads, and liver; and for lysC in gills, gonads, liver, and muscles. This study provides evidence that probiotics exhibiting antioxidant and antimutagenic properties can provide significant benefits in vivo within aquaculture systems. The molecular effects of these probiotics appear to be complex and tissue-specific, with both upregulation and downregulation of immune system genes observed. Nevertheless, at the organismal level, the impact was unequivocally positive in terms of aquaculture objectives, manifested as enhanced body weight gain in the fish. Consequently, these Bacillus strains warrant serious consideration as potential probiotics for this species. Full article