Search Results (36)

Soil-borne fungal pathogens such as Sclerotium spp., Rhizoctonia spp., and Macrophomina spp. pose significant threats to global agriculture, with soybean crops among the most severely affected due to damping-off disease. These pathogens cause substantial yield losses, making their management a critical concern. In this study, we investigated the potential of Bacillus siamensis BCL, a novel Neotropical strain, as an eco-friendly solution for managing Sclerotium, Rhizoctonia, and Macrophomina species. The strain exhibited strong antifungal activity, significantly inhibiting fungal growth in vitro, with the greatest suppression observed against Macrophomina spp., reaching up to 81%. In vivo assays further confirmed the biocontrol potential of B. siamensis. When applied at 10⁶ colony-forming units (CFU)/mL, the strain reduced disease symptoms and improved plant growth parameters—including root length, shoot biomass, and leaf number—compared to untreated, infected controls. The protective effect varied by pathogen, with the most significant recovery in root length observed against Macrophomina spp. (85%) and Sclerotium spp. (78%). In preventive treatments, fermentation extracts of the B. siamensis strain suppressed disease progression, although they did not promote seedling growth. A genomic analysis of B. siamensis BCL revealed genes encoding antimicrobial secondary metabolites, including terpenes, fengycins, and surfactins. These findings highlight B. siamensis BCL as a promising candidate for sustainable crop protection and a valuable resource for developing novel antimicrobial strategies in agriculture. Full article

Fire blight, caused by Erwinia amylovora, poses a significant threat to the sustainable development of the Korla Xiangli (Pyrus×sinkiangensis. Yu) industry. In this study, we used multiple experimental approaches to comprehensively evaluate the efficacy of three antagonistic bacterial strains—namely, Mg-7 (Leuconostoc mesenteroides), Rt-10 (Alcaligenes faecalis), and Rt-11 (Bacillus siamensis)—in controlling fire blight. In vitro plate inhibition assays revealed that Mg-7 exhibited the largest inhibition zone diameter, exceeding Rt-10 and Rt-11 in this respect, suggesting its strong antifungal potential. In therapeutic tests conducted on detached leaves, Mg-7 achieved the highest control efficiency, 60.39%, while Rt-10 demonstrated the greatest efficiency (76.96%) in protective tests. Conversely, in therapeutic trials focusing on detached branches, Mg-7 showed a control efficiency of 45.90%, whereas Rt-11 exhibited the highest efficiency, 86.27%, in protective trials. Furthermore, in vitro evaluations indicated that the Mg-7 treatment significantly reduced the lesion spread area. Enzymatic analyses revealed that, in the leaf protection assay, catalase activity (CAT) demonstrated significant increases of 65.56%, 85.46%, and 45.55% under the Mg-7, RT-10, and RT-11 treatments, respectively, when compared with the EA control group on day four. Correspondingly, in the branch protection assay, polyphenol oxidase (PPO) activity displayed marked elevations of 62.84%, 52.06%, and 82.69% under identical experimental conditions at the same time point. These treatments not only upregulated antioxidant enzyme activities but also significantly reduced malondialdehyde (MDA) content, effectively mitigating oxidative damage while enhancing foliar and branch resistance to fire blight infection. Field trials conducted in outdoor orchards confirmed that the Mg-7 bacterial suspension provided more effective and stable control against fire blight than Rt-10 and Rt-11. Overall, Mg-7 shows significant potential for use as a biocontrol agent for managing fire blight because of its high efficacy, stability, and ability to enhance plant defense responses. Full article

A total of 34 strains of bacteria were isolated from peanut rhizosphere soil, and all showed some in vitro inhibition of the pathogen Sclerotium rolfsii in co-culture. Strain YB-1632 produced the highest level of inhibition and also produced relatively high levels of biofilm in culture. Cell-free culture extracts and volatiles from it were also inhibitory to S. rolfsii. Based on 16S rDNA, gyrA, and gyrB sequences, it was identified as Bacillus siamensis. In the greenhouse, seed treatment resulted in a level of control of peanut sclerotium blight (PSB) comparable to that of a standard fungicide seed treatment. In addition to its antifungal activity, YB-1632 could induce disease resistance in peanut seedlings based on increasing peanut defense enzyme activities and gene expression. The priming of defense gene expression against a necrotrophic pathogen is consistent with Induced Systemic Resistance (ISR). In addition, YB-1632 produced enzyme activities in culture associated with root colonization and plant growth promotion. In the greenhouse, it increased peanut seedling growth, indicating the YB-1632 is a plant growth-promoting rhizobacterium (PGPR). In summary, YB-1632 is a promising novel PSB biocontrol agent and PGPR of peanut. Full article

The use of plant growth-promoting rhizobacteria (PGPR) for the bioremediation of heavy metal cadmium (Cd) and for enhancing plant growth in Cd-polluted soil is widely recognized as an effective approach. This study aimed to isolate Cd-resistant bacteria with plant growth-promoting (PGP) traits from the rhizosphere of vegetables subjected to metal contamination and to investigate the mechanisms associated with Cd adsorption as well as its impact on Cd uptake in lettuce. Six Cd-resistant bacterial strains were isolated from rhizosphere soil, among which the R27 strain exhibited the highest tolerance to Cd (minimum inhibitory concentration of 2000 mg/L) along with PGP traits, including phosphate solubilization (385.11 mg/L), the production of indole-3-acetic acid (IAA) (35.92 mg/L), and siderophore production (3.34 mg/L). Through a range of physiological, biochemical, and molecular assessments, the R27 strain was classified as Bacillus siamensis. This strain demonstrated notable efficiency in removing Cd²⁺ from the growth medium, achieving an efficacy of 80.1%. This removal was facilitated by cell surface adsorption through functional groups such as O–H, C=O, –CO–NH–, and C–O, alongside intracellular Cd accumulation, as evidenced by SEM, TEM, EDX, and FTIR analyses. Pot culture experiments indicated that R27 significantly promoted lettuce seedling growth and helped plants tolerate Cd stress, with the underlying mechanisms likely involving increased antioxidant activities for scavenging reactive oxygen species (ROS) induced by Cd stress, and reduced Cd²⁺ levels in lettuce seedlings to mitigate Cd²⁺ toxicity. These physiological changes were further supported by the down-regulation of genes associated with cadmium transport, including IRT1, Nramp1, HMA2, HMA4, ZIP4, and ZIP12, as well as the significantly reduced root bio-concentration factor (BCF) and translocation factor (TF). In summary, the R27 strain offers considerable potential in the bioremediation of Cd-polluted soils and can serve as a bio-fertilizer to enhance plant growth. Full article

Among 79 Bacillus spp. isolated from Miang, a fermented tea in north Thailand, 17 Bacillus strains were selected with probiotic potential in Nile tilapia culture based on the capabilities of bacteriocin production and associated antimicrobial activities against fish pathogens, Aeromonas hydrophila and Streptococcus agalactiae. However, only six isolates were selected for further extensive studies based on the strength of their antimicrobial activities and their tolerance against simulated gastrointestinal conditions. The molecular identification by 16S rRNA gene sequence analysis revealed that five isolates, K2.1, K6.1, K7.1, K15.4, and K22.6, were Bacillus tequilensis, and the isolate K29.2 was Bacillus siamensis. B. siamensis K29.2 showed complete susceptibility to antibiotics tested in this study, while B. tequilensis K 15.4 showed moderate resistance to some antibiotics; therefore, both strains were selected as potential probiotic bacteria. B. tequilensis K15.4 and B. siamensis K29.2 were capable of the production and secretion of extracellular protease and polysaccharide degrading enzymes, including cellulase, xylanase, and β-mannanase. The tannin tolerant test also demonstrated their ability to grow on selective agar plates and secrete cellulase and β-mannanase in the presence of hydrolyzable tannin. In addition, in vitro digestion of commercial fish substrate revealed that the extracellular enzymes produced by both strains efficiently reacted with feed protein and polysaccharides. Based on the results from this study, B. siamensis K29.2 was deemed to have the highest potential multifunctional probiotic qualities for application in Nile tilapia culture, while the antibiotic-resistant gene in B. tequilensis K15.4 must be clarified before field application. Full article

Global public health is facing a major issue with emerging resistance to antimicrobial agents. Antimicrobial agents that are currently on the market are strong and efficient, but it has not been ruled out that these medications will eventually cause resistance to bacteria. Exploring novel bioactive compounds derived from natural sources is therefore, crucial to meet future demands. The present study evaluated the mode of action of the antimicrobial potential protease enzyme SH21. Protease SH21 exhibited antimicrobial activity, strong heat stability (up to 100 °C), and pH stability (pH 3.0 to 9.0). In terms of mode of action, we found that protease SH21 was able to disrupt the bacterial cell membrane as the results of the nucleotide leakage and cell membrane permeability assay. In addition, we also checked inner membrane permeability by PI uptake assay which suggested that protease SH21 has the ability to enter the bacterial cell membrane. Our results revealed that the antimicrobial protease SH21 might be a promising candidate for treating microbial infections. Full article

Previous studies on the early interference of gut microbiota by Bacillus siamensis (B. siamensis) in weaned piglets are rarely reported, and the present trial is a preliminary study. This experiment was conducted to investigate the effects of B. siamensis supplementation on the growth performance, serum biochemistry, immune response, fecal short-chain fatty acids and microbiota of weaned piglets. Sixty weaned piglets were randomly divided into a control group (CON) and a B. siamensis group (BS), which were fed a basal diet and the basal diet supplemented with 5 × 10¹⁰ CFU B. siamensis per kg, respectively. Each group had 3 replicates and 10 piglets per replicate. The trial lasted for 28 days. The results showed that B. siamensis significantly increased the serum growth hormone (GH) and insulin-like growth factor (IGF) in piglets. Compared with the CON group, the levels of serum immunoglobulin and inflammatory factors in the BS group were significantly improved. In addition, the serum concentrations of zonulin and endotoxin (ET) in the BS group were lower. The dietary addition of B. siamensis significantly increased fecal short-chain fatty acid (SCFA) levels in piglets. Notably, B. siamensis improved the microbial composition by increasing beneficial genera, including Weissella, Lachnospiraceae_NK4A136_group and Bifidobacterium, and decreasing pathogenic genera, including Pantoea, Fusobacterium and Gemella, in piglet feces. Correlation analysis showed that the benefits of dietary B. siamensis supplementation were closely related to its improved microbial composition. In summary, the addition of B. siamensis can improve the immunity function, inflammatory response, gut permeability and SCFA levels of weaned piglets, which may be achieved through the improvement of their microbiota. Full article

In recent years, the search for new compounds with antibacterial activity has drastically increased due to the spread of antibiotic-resistant microorganisms. In this study, we analyzed Cell-Free Supernatant (CFS) from Bacillus siamensis, assessing its potential antimicrobial activity against some of the main pathogenic microorganisms of human interest. To achieve this goal, we exploited the natural antagonism of skin-colonizing bacteria and their ability to produce compounds with antimicrobial activity. Biochemical and molecular methods were used to identify 247 strains isolated from the skin. Among these, we found that CFS from a strain of Bacillus siamensis (that we named CPAY1) showed significant antimicrobial activity against Staphylococcus aureus, Enterococcus faecalis, Streptococcus agalactiae, and Candida spp. In this study, we gathered information on CFS’s antimicrobial activity and on its sensitivity to chemical–physical parameters. Time–kill studies were performed; anti-biofilm activity, antibiotic resistance, and plasmid presence were also investigated. The antimicrobial compounds included in the CFS showed resistance to the proteolytic enzymes and were heat stable. The production of antimicrobial compounds started after 4 h of culture (20 AU/mL). CPAY1 CFS showed antimicrobial activity after 7 h of bacteria co-culture. The anti-biofilm activity of the CPAY1 CFS against all the tested strains was also remarkable. B. siamensis CPAY1 did not reveal the presence of a plasmid and showed susceptibility to all the antibiotics tested. Full article

Biochar is a carbon-rich material that enhances nutrient availability, soil quality, and microbial activity, improving plant growth and crop productivity. In this study, the palm oil midrib biochar (POMB) was used as a soil conditioner to improve the growth of romaine lettuce (Lactuca sativa L. var. longifolia), together with a biofertilizer containing a newly isolated bacterial strain SM11. The newly isolated SM11 was closely related to Bacillus siamensis, with 99.77% similarity based on 16s rRNA gene sequence analysis. POMB treatment improved the fresh weight of romaine lettuce by up to 181.33 ± 1.15 g plant⁻¹, which is equivalent to 160.27% growth enhancement compared to the control without POMB. By comparison, POMB treatment with a biofertilizer containing SM11 increased fresh weight to 275.67 ± 11.59 g plant⁻¹ with a growth enhancement of 295.68%. The addition of SM11 biofertilizer also protected against disease during cultivation. The addition of POMB reduced nitrate accumulation in romaine lettuce from 631.38 ± 0.36 to 223.31 ± 0.20 mg kg⁻¹ by 59.08% compared to the control. This study suggests a way to manage agricultural waste from local palm oil plantations, thereby reducing waste accumulation and adding value to palm oil waste by-products for agricultural benefit through a biotechnological process. Full article

Chrysanthemum × morifolium Ramat. is a famous perennial herb with medicinal, edible, and ornamental purposes, but the occurrence of plant diseases can reduce its value. A serious disease that caused leaf spots in C. morifolium appeared in 2022 in Tongxiang City, Zhejiang Province, China. The C. morifolium leaves with brown spots were collected and used for pathogen isolation. By completing Koch’s postulates, it was proven that the isolate had pathogenicity to infect C. morifolium. It was determined that the pathogen isolated from chrysanthemum leaves was Nigrospora oryzae, through morphology and a multilocus sequence analysis method using a combination of the internal transcribed spacer gene (ITS), beta-tubulin gene (TUB2), and translation elongation factor 1-alpha gene (TEF1-α). This is the first report of C. morifolium disease caused by N. oryzae in the world. Through dual culture assay on PDA plates, 12 strains of bacteria with antagonistic effects were selected from 231 strains from the C. morifolium phyllosphere, among which Bacillus siamensis D65 had the best inhibitory effect on N. oryzae growth. In addition, the components of a strain D65 fermentation broth were profiled by SPME-GC-Q-TOF analysis, providing a foundation for further application and research of biological control. Full article

Oxidative damage and inflammation are among the very significant aspects interrelated with cancer and other degenerative diseases. In this study, we investigated the biological activities of a 25 kDa protease (SH21) that was purified from Bacillus siamensis. SH21 exhibited very powerful antioxidant and reactive oxygen species (ROS) generation inhibition activity in a dose-dependent approach. The mRNA and protein levels of antioxidant enzymes such as superoxide dismutase 1 (SOD1), catalase (CAT), and glutathione peroxidase 1 (GPx-1) were enhanced in the SH21-treated sample. SH21 also increased the transcriptional and translational activities of NF-E2-related factor 2 (Nrf2) with the subsequent development of detoxifying enzyme heme oxygenase-1 (HO-1). In addition, SH21 showed potential anti-inflammatory activity via inhibition of nitric oxide (NO) and proinflammatory cytokines, such as TNF-α, IL-6, and IL-1β, production in lipopolysaccharide (LPS)-stimulated RAW 264.7 cells. At concentrations of 60, 80, and 100 μg/mL, SH21 potentially suppressed nitric oxide synthase (iNOS) and cytokine gene expressions. Furthermore, SH21 significantly released lactate dehydrogenase (LDH) enzyme in cancer cell supernatant in a concentration-dependent manner and showed strong activity against three tested cancer cell lines, including HL-60, A549, and Hela. Our results suggest that SH21 has effective antioxidant, anti-inflammatory, and anticancer effects and could be an excellent therapeutic agent against inflammation-related diseases. Full article

Zanthoxylum armatum, a significant forest plant in southwestern China, is crucial for preserving soil and water resources. However, the presence of root rot disease has led to plant death, impacting the pepper sector. Effective control measures for this disease are still lacking. Rhizosphere microorganisms play a vital role in plant health by inhibiting plant pathogens and inducing plant resistance. This research aimed to isolate and characterize the pathogen responsible for root rot disease in Z. armatum. Comparative analysis of fungal and bacterial communities in the rhizosphere soil of healthy and diseased plants revealed Fusarium solani as the pathogenic fungus causing root rot disease. Diseased plants had a higher occurrence of Fusarium spp., while disease-free plants had a higher abundance of ecologically beneficial microbial communities that could potentially serve as biocontrol agents. Three bacterial strains (Bacillus subtilis, Bacillus amyloliquefaciens, and Bacillus siamensis) were identified as effective biocontrol agents, inhibiting the growth of the pathogenic fungus F. solani both in vivo and in vitro. This study deepens our understanding of the rhizosphere soil microbial community differences between diseased and healthy Z. armatum, providing potential biocontrol bacteria to enhance plant resistance against root rot disease. Full article

The present study aimed to characterize the potential plant growth-promoting rhizobacteria (PGPR) based on biochemical tests based on eight bacterial isolates, and to identify potential PGPR based on the 16S rRNA sequencing molecular method. Eight potential PGPR strains (UPMC1166, UPMC1168, UPMC1254, UPMC1376, UPMC1389, UPMC1393, UPMC703 and UPMC704) isolated from the soils in the oil palm (Elaeis guineensis) estates across Malaysia were selected because of their most PGPR activities. They were screened for nitrogen fixation, phosphate and potassium solubilization, and production of indole-3-acetic acid (IAA). All isolates showed the ability to grow between pH 2 to 9 and survive from 2 to 15% (w/v) of the salt medium. Among the isolated PGPRs, four PGPRs (UPMC1166, UPMC1168, UPMC1254 and UPMC1389) showed the ability to fix nitrogen and had the potential to produce IAA. Furthermore, two PGPRs (UPMC1393 and UPMC1376) demonstrated the ability to solubilize phosphate, while three PGPRs (UPMC703, UPMC704, and UPMC1393) showed the ability to solubilize potassium. Therefore, all the above eight PGPR isolates can benefit the oil palm cultivation industry. The molecular identification based on 16S rRNA gene sequence revealed that UPMC1166 was identified as Bacillus methylotrophicus; UPMC1168 as B. siamensis; UPMC1254 as B. subtilis; UPMC1389 as B. albus; UPMC1376 as Lactobacillus plantarum; UPMC1393 as B. marisflavi; UPMC703 as Burkhoderiaanthina and UPMC704 as B. metallica. These novel strains can be further investigated for their viability and effectiveness for bio-organic fertilizer production and application in the immature stage of oil palm growth. Full article

Rice yield can be significantly impacted by rice blast disease. In this investigation, an endophytic strain of Bacillus siamensis that exhibited a potent inhibitory effect on the growth of rice blast was isolated from healthy cauliflower leaves. 16S rDNA gene sequence analysis showed that it belongs to the genus Bacillus siamensis. Using the rice OsActin gene as an internal control, we analyzed the expression levels of genes related to the defense response of rice. Analysis showed that the expression levels of genes related to the defense response in rice were significantly upregulated 48 h after treatment. In addition, peroxidase (POD) activity gradually increased after treatment with B-612 fermentation solution and peaked 48 h after inoculation. These findings clearly demonstrated that the 1-butanol crude extract of B-612 retarded and inhibited conidial germination as well as the development of appressorium. The results of field experiments showed that treatment with B-612 fermentation solution and B-612 bacterial solution significantly reduced the severity of the disease before the seedling stage of Lijiangxintuan (LTH) was infected with rice blast. Future studies will focus on exploring whether Bacillus siamensis B-612 produces new lipopeptides and will apply proteomic and transcriptomic approaches to investigate the signaling pathways involved in its antimicrobial effects. Full article

Fusarium crown rot (FCR) caused by Fusarium pseudograminearum is one of the most serious soil-borne diseases of wheat. Among 58 bacterial isolates from the rhizosphere soil of winter wheat seedlings, strain YB-1631 was found to have the highest in vitro antagonism to F. pseudograminearum growth. LB cell-free culture filtrates inhibited mycelial growth and conidia germination of F. pseudograminearum by 84.14% and 92.23%, respectively. The culture filtrate caused distortion and disruption of the cells. Using a face-to-face plate assay, volatile substances produced by YB-1631 inhibited F. pseudograminearum growth by 68.16%. In the greenhouse, YB-1631 reduced the incidence of FCR on wheat seedlings by 84.02% and increased root and shoot fresh weights by 20.94% and 9.63%, respectively. YB-1631 was identified as Bacillus siamensis based on the gyrB sequence and average nucleotide identity of the complete genome. The complete genome was 4,090,312 bp with 4357 genes and 45.92% GC content. In the genome, genes were identified for root colonization, including those for chemotaxis and biofilm production, genes for plant growth promotion, including those for phytohormones and nutrient assimilation, and genes for biocontrol activity, including those for siderophores, extracellular hydrolase, volatiles, nonribosomal peptides, polyketide antibiotics, and elicitors of induced systemic resistance. In vitro production of siderophore, β-1, 3-glucanase, amylase, protease, cellulase, phosphorus solubilization, and indole acetic acid were detected. Bacillus siamensis YB-1631 appears to have significant potential in promoting wheat growth and controlling wheat FCR caused by F. pseudograminearum. Full article