Search Results (22)

Benzo[a]pyrene is an important indicator of polycyclic aromatic hydrocarbons pollution that exhibits complex atmospheric dynamics influenced by meteorological factors and suspended particulate matter (SPM). Herein, the factors influencing B(a)P concentration were elucidated by analyzing the monthly environmental data for Kyoto, Japan, from 2001 to 2021 using an improved association rule algorithm. Results revealed that B(a)P concentrations were 1.3–3 times higher in cold seasons than in warm seasons and SPM concentrations were lower in cold seasons. The clustering performance was enhanced by optimizing the K-means method using the sum of squared error. The efficiency and reliability of the traditional Apriori algorithm were enhanced by restructuring its candidate itemset generation process, specifically by (1) generating C₂ exclusively from frequent itemset L₁ to avoid redundant database scans and (2) implementing the iterative pruning of nonfrequent subsets during L_k → C_k+1 transitions, adding the lift parameter, and eliminating invalid rules. Strong association rules revealed that B(a)P concentrations ≤ 0.185 ng/m³ were associated with specific meteorological conditions, including humidity ≤ 58%, wind speed ≥ 2 m/s, temperature ≥ 12.3 °C, and pressure ≤ 1009.2 hPa. Among these, changes in pressure had the most substantial impact on the confidence of the association rules, followed by humidity, wind speed, and temperature. Under the influence of high SPM concentrations, favorable meteorological conditions further accelerated pollutant dispersion. B(a)P concentration increased with increasing pressure, decreasing temperature, and decreasing wind speed. Principal component analysis confirmed the robustness and accuracy of our optimized association rule approach in quantifying complex, nonlinear relationships, while providing granular, interpretable insights beyond the traditional methods. Full article

Breast cancer is a heterogeneous disease with varying responses to therapies. While targeted treatments have advanced, conventional therapies inducing oxidative stress remain widely used. H₂O₂ has emerged as a therapeutic candidate due to its role in signaling and cell-function regulation. Its transport is tightly regulated through peroxiporins such as AQP5, expression of which is linked to poor prognosis and metastatic spread, and its role in therapy resistance remains underexplored. This study examined AQP5’s role in the acute oxidative stress response. We overexpressed AQP5 in breast cancer cell lines with low basal levels—HR+ (MCF7), HER2+ (SkBr-3), and TNBC (SUM 159)—and exposed them to H₂O₂ for 24 h. We assessed cell viability, intracellular ROS, changes in AQP3 and AQP5, and key antioxidative and cancer-related pathways (NRF2, PI3K/AKT, FOXOs). AQP5 overexpression elicited a cell-type-specific response. H₂O₂ treatment reduced viability in SkBr-3-AQP5 and MCF7-AQP5 cells, increased ROS levels in MCF7-AQP5, and decreased ROS in SUM 159-AQP5. It also increased AQP3 in MCF7-AQP5 and differentially affected NRF2, FOXOs, and PI3K/AKT signaling, notably activating NRF2/AKR1B10 axis in MCF7-AQP5 and decreasing FOXO1 in SUM 159-AQP5. These findings highlight the need for further research into AQP5’s role in the oxidative stress response in breast cancer cells. Full article

Conventional mineral fertilization (CMF) is a common practice in infertile sugarcane-cultivated tropical soils, increasing production costs and environmental concerns. Combining CMF with composted sewage sludge (CSS) could be a sustainable strategy. We aim to evaluate changes in soil chemical properties, macro- and micronutrient concentrations in the soil surface (A_p1; 0–25 cm) and subsurface (A_p2; 25–50 cm) horizons, after CSS application with or without CMF in sugarcane cultivation (first and second ratoon cane). Eleven treatments, featured by CSS increase rates and mixed with CMF at different concentrations, were tested in the first ratoon; during the second, the CSS residual effect was evaluated. Applying CSS in sugarcane-cultivated soils, improved the following: (i) soil organic matter, pH, the sum of bases, cation-exchange capacity, and base saturation; (ii) overall nutrient concentrations (P, K, Ca, Mg, B, Cu, and Zn). The treatments showing the best performances were those with 5.0 Mg ha⁻¹ of CSS. Composted sewage sludge has the potential for use as an organic natural fertilizer reducing the need for CMF. When applied in infertile tropical soils, additional positive effects can be achieved, such as decreasing production costs and providing socio-economic benefits. Full article

A Gram-stain-negative, obligately aerobic, non-motile, rod-shaped bacterial strain designated SJW1-29^T was isolated from brackish water samples collected from the Seomjin River, Republic of Korea. The purpose of this study was to characterize strain SJW1-29^T and determine its taxonomic position as a potential new genus within the family Spirosomaceae. The strain grew within the range of 10–30 °C (optimum, 25 °C), pH 5.0–10.0 (optimum, 7.0), and 1–4% NaCl (optimum, 3%). Phylogenetic analysis based on the 16S rRNA gene revealed that strain SJW1-29^T belongs to the family Spirosomaceae and is closely related to Persicitalea jodogahamensis Shu-9-SY12-35C^T (91.3% similarity), Rhabdobacter roseus R491^T (90.6%), and Arundinibacter roseus DMA-K-7a^T (90.0%), while the similarities to strains within the order Cytophagales were lower than 90.0%. The genome is 7.1 Mbp with a G+C content of 50.7 mol%. The use of genome-relatedness indices confirmed that this strain belongs to a new genus. The major polar lipid profile consisted of phosphatidylethanolamine, and MK-7 was the predominant menaquinone. The predominant fatty acids were summed feature 3 (C_16:1 ω7c and/or C_16:1 ω6c), iso-C_15:0, iso-C_17:0 3-OH, and C_16:0, representing more than 80% of the total fatty acids. The phenotypic, chemotaxonomic, genetic, and phylogenetic properties suggest that strain SJW1-29^T represents a novel species within a new genus in the family Spirosomaceae, for which the name Salmonirosea aquatica gen. nov., sp. nov., is proposed. The type strain of Salmonirosea aquatica is SJW1-29^T (=KCTC 72493^T = NBRC 114061^T = FBCC-B16924^T). Full article

Yield data represent a valuable layer for supporting decision-making as they reflect crop management results. Forestry decision-makers often rely on coarse spatial resolution data (e.g., forest inventory plots) despite the availability of modern harvesters that can provide high-resolution forestry yield data. The objectives of this study were to present a method for generating high-resolution Eucalyptus grandis yield data (individual tree-level) and explore their applications, such as correlation analysis with soil attributes to aid nutrient recommendations. Two evaluations were conducted at two sites in Brazil: (a) assessing the positioning accuracy of the global navigation satellite system (GNSS) receiver positioning, and (b) analyzing the yield data and their correlation with the soil attributes. The results indicated that positioning the GNSS receiver at the harvesting head provided higher accuracy than placement at the top of the harvester cabin for individual tree-level data. Reliable yield data were generated despite the GNSS receiver’s increased susceptibility to damage when mounted on a harvest head. The linear correlation analysis between the Eucalyptus grandis yield data and soil attributes showed both negative (Clay, B, S, coarse sand, and potential acidity − H + Al) and positive correlations (K, Mg, pH-SMP, Ca, sum of bases, pH, base saturation, fine sand, total sand, and silt content). This study demonstrates the feasibility of obtaining high-resolution yield data at the individual tree-level and their correlation with soil attributes, providing valuable insights for improving forestry decision-making. Full article

The aim of this study was to compare the quality characteristics of the meat of two genotypes (Lohmann Brown and Lohmann White) of laying hens after the laying period. Studies were conducted on pectoral and leg muscles from 26 females, 13 of each genotype. Breast and leg muscles were evaluated in terms of their basic chemical composition, acidity (pH₂₄), color attributes (L*, a*, b*), electrical conductivity (EC₂₄) and macro- (K, P, Na, Mg, Ca) and microelements (Fe, Zn, Cu, Mn, Cr). Analysis of the texture of the pectoral muscle major and rheological properties (sum of viscosity modules and sum of elasticity modules) was also performed. Breast and leg meat were also subjected to sensory evaluation. The genotype of the birds significantly affected the percentage of intramuscular fat in the pectoral muscle and the percentage of protein, fat and water in the leg muscle. When analyzing pectoral and leg muscles for color attributes, we found no significant (p > 0.05) differences between genotypes. Differences were shown, however, between genotypes in EC₂₄ and phosphorus content in leg muscle. Breast muscles differed significantly (p < 0.05) in iron and zinc content. Sensory analysis revealed significant differences between genotypes in leg muscle tenderness and juiciness, and breast muscle juiciness and aroma desirability. When analyzing the breast muscle in terms of texture, we did not observe any significant differences, nor did we find any differences in the assessment of rheological properties. Not depending on genotype, however, we noted significant differences between protein, fat, water and collagen content, sodium, magnesium, calcium, iron, zinc, copper, manganese, chromium, acidity, color parameters (L*, a*, b*), EC₂₄ and tastiness desirability between breast meat and leg meat. The results of this study showed that meat from old hens obtained after the laying period is a good material for further technological processing, due to its favorable basic chemical composition and high nutritional value expressed in the content of macro- and microelements, and is also characterized by relatively good sensory characteristics, which can be improved by marinating or adding enzymatic preparations during its processing. Full article

In recent years, the non-covalent interactions between chalcogen centers have aroused substantial research interest because of their potential applications in organocatalysis, materials science, drug design, biological systems, crystal engineering, and molecular recognition. However, studies on π-hole-type chalcogen∙∙∙chalcogen interactions are scarcely reported in the literature. Herein, the π-hole-type intermolecular chalcogen∙∙∙chalcogen interactions in the model complexes formed between XO₂ (X = S, Se, Te) and CH₃YCH₃ (Y = O, S, Se, Te) were systematically studied by using quantum chemical computations. The model complexes are stabilized via one primary X∙∙∙Y chalcogen bond (ChB) and the secondary C−H∙∙∙O hydrogen bonds. The binding energies of the studied complexes are in the range of −21.6~−60.4 kJ/mol. The X∙∙∙Y distances are significantly smaller than the sum of the van der Waals radii of the corresponding two atoms. The X∙∙∙Y ChBs in all the studied complexes except for the SO₂∙∙∙CH₃OCH₃ complex are strong in strength and display a partial covalent character revealed by conducting the quantum theory of atoms in molecules (QTAIM), a non-covalent interaction plot (NCIplot), and natural bond orbital (NBO) analyses. The symmetry-adapted perturbation theory (SAPT) analysis discloses that the X∙∙∙Y ChBs are primarily dominated by the electrostatic component. Full article

Epigenetic alterations such as DNA methylation and histone modifications are implicated in repressing several tumor suppressor genes in prostate cancer progression. In this study, we determined the anti-prostate cancer effect of a small molecule drug guadecitabine (gDEC) that inhibits/depletes the DNA methylation writer DNA methyltransferase 1 (DNMT1). gDEC inhibited prostate cancer cell growth and proliferation in vitro without activating the apoptotic cascade. Molecular studies confirmed DNMT1 depletion and modulated epithelial-mesenchymal transition markers E-cadherin and β-catenin in several prostate cancer cell lines (LNCaP, 22Rv1, and MDA PCa 2b). gDEC treatment also significantly inhibited prostate tumor growth in vivo in mice (22Rv1, MDA PCa 2b, and PC-3 xenografts) without any observed toxicities. gDEC did not impact the expression of androgen receptor (AR) or AR-variant 7 (AR-V7) nor sensitize the prostate cancer cells to the anti-androgen enzalutamide in vitro. In further investigating the mechanism of cytoreduction by gDEC, a PCR array analyses of 84 chromatin modifying enzymes demonstrated upregulation of several lysine-specific methyltransferases (KMTs: KMT2A, KMT2C, KMT2E, KMT2H, KMT5A), confirmed by additional expression analyses in vitro and of harvested xenografts. Moreover, gDEC treatment increased global histone 3 lysine 4 mono-and di-methylation (H3K4me1 and H3K4me2). In sum, gDEC, in addition to directly depleting the corepressor DNMT1, upregulated KMT activating epigenetic enzymes, activating terminal epithelial program activation, and prostate cancer cell cycling exits independent of apoptosis. Full article

Aquaporin 3 (AQP3) is a peroxiporin, a membrane protein that channels hydrogen peroxide in addition to water and glycerol. AQP3 expression also correlates with tumor progression and malignancy and is, therefore, a potential target in breast cancer therapy. In addition, epithelial growth factor receptor (EGFR) plays an important role in breast cancer. Therefore, we investigated whether disruption of the lipid raft harboring EGFR could affect AQP3 expression, and conversely, whether AQP3 silencing would affect the EGFR/phosphoinositide-3-kinase (PI3K)/Protein kinase B (PKB or Akt) signaling pathway in breast cancer cell lines with different malignant capacities. We evaluated H₂O₂ uptake, cell migratory capacity, and expression of PI3K, pAkt/Akt in three breast cancer cell lines, MCF7, SkBr3, and SUM159PT, and in the nontumorigenic breast epithelial cell line MCF10A. Our results show different responses between the tested cell lines, especially when compared to the nontumorigenic cell line. Neither lipid raft disruption nor EGF stimuli had an effect on PI3K/Akt pathway in MCF10A cell line. AQP3-silencing in SkBr3 and SUM159PT showed that AQP3 can modulate PI3K/Akt activation in these cells. Interestingly, SUM159PT cells increase nuclear factor-E2–related factor 2 (NRF2) in response to lipid raft disruption and EGF stimuli, suggesting an oxidative-dependent response to these treatments. These results suggest that in breast cancer cell lines, AQP3 is not directly related to PI3K/Akt pathway but rather in a cell-line-dependent manner. Full article

Herein, the effect of direct and indirect barbecue cooking processes, including different cooking degrees (medium and well done), on the formation of polycyclic aromatic hydrocarbons (PAHs) and on certain quality parameters (water content, cooking loss, pH, lipid oxidation) of beef meat was examined. While no significant effect (p > 0.05) of the cooking method was detected on the water content, cooking loss, ∑PAH4 [the sum of benzo[a]pyrene (BaP), benzo[a]anthracene (BaA), chrysen (Chry), and benzo[b]fluoranthene (BbF)], and ∑PAH8 [the sum of BaP, BaA, Chry, benzo[k]fluoranthene (BkF), dibenzo[a,h]anthracene (DahA), benzo[g,h,i]perylene (Bghip), and indeno [1,2,3-cd]pyrene (IncdP)] content, it was determined that it had a significant effect on pH (p < 0.05) and lipid oxidation (TBARS, p < 0.01). While the cooking degree did not have a significant effect (p > 0.05) on the TBARS value, it had a significant effect (p < 0.05) on the water content and pH value, and a very significant effect (p < 0.01) on the cooking loss. While BaA and BaP compounds were detected in all barbecued samples, the DahA compound could not be detected in any of the samples. Varying levels of BaA (up to 5.62 ng/g), Chry (up to 0.43 ng/g), BbF (LOD-..-LOQ), BkF (LOD-..-LOQ), BaP (up to 0.49 ng/g), BghiP (up to 0.82 ng/g), and IncdP (up to 4.99 ng/g) compounds were determined in the samples. While the ∑PAH4 contents varied between 0.71 and 6.35 ng/g, the ∑PAH8 contents varied between 1.12 and 11.34 ng/g. While the increase in cooking level did not affect the ∑PAH4 content, it caused a significant increase in the ∑PAH8 content. The highest BaP (0.49 ng/g), ∑PAH4 (6.35 ng/g), and ∑PAH8 (11.34 ng/g) contents were detected in the meat samples that were well cooked on the barbecue by the direct method. The results have proven that PAHs are formed at varying levels in both meat samples cooked on the barbecue by the direct method and the indirect method. On the other hand, it has been determined that even if 100 g of the meat with the highest BaP and ∑PAH4 content is eaten, the exposure amount remains far below the limit values specified for PAHs. However, paying close attention to the barbecue cooking process is still recommended. Full article

Meat quality is of importance in consumer acceptance and purchasing tendency of pork. However, the genetic architecture of pork meat quality traits remains elusive. Herein, we conducted genome-wide association studies to detect single nucleotide polymorphisms (SNPs) and genes affecting meat pH and meat color (L*, lightness; a*, redness; b*, yellowness) in 1518 three-way crossbred pigs. All individuals were genotyped using the GeneSeek Porcine 50K BeadChip. In sum, 30 SNPs and 20 genes are found to be associated with eight meat quality traits. Notably, we detect one significant quantitative trait locus (QTL) on SSC15 with a 143 kb interval for meat pH (pH_12h), together with the most promising candidate TNS1. Interestingly, two newly identified SNPs located in the TTLL4 gene demonstrate the highest phenotypic variance of pH_12h in this QTL, at 2.67%. The identified SNPs are useful for the genetic improvement of meat quality traits in pigs by assigning higher weights to associated SNPs in genomic selection. Full article

In image classification with Deep Convolutional Neural Networks (DCNNs), the number of parameters in pointwise convolutions rapidly grows due to the multiplication of the number of filters by the number of input channels that come from the previous layer. Existing studies demonstrated that a subnetwork can replace pointwise convolutional layers with significantly fewer parameters and fewer floating-point computations, while maintaining the learning capacity. In this paper, we propose an improved scheme for reducing the complexity of pointwise convolutions in DCNNs for image classification based on interleaved grouped filters without divisibility constraints. The proposed scheme utilizes grouped pointwise convolutions, in which each group processes a fraction of the input channels. It requires a number of channels per group as a hyperparameter $Ch$. The subnetwork of the proposed scheme contains two consecutive convolutional layers K and L, connected by an interleaving layer in the middle, and summed at the end. The number of groups of filters and filters per group for layers K and L is determined by exact divisions of the original number of input channels and filters by $Ch$. If the divisions were not exact, the original layer could not be substituted. In this paper, we refine the previous algorithm so that input channels are replicated and groups can have different numbers of filters to cope with non exact divisibility situations. Thus, the proposed scheme further reduces the number of floating-point computations (11%) and trainable parameters (10%) achieved by the previous method. We tested our optimization on an EfficientNet-B0 as a baseline architecture and made classification tests on the CIFAR-10, Colorectal Cancer Histology, and Malaria datasets. For each dataset, our optimization achieves a saving of 76%, 89%, and 91% of the number of trainable parameters of EfficientNet-B0, while keeping its test classification accuracy. Full article

The oil palm (OP) Elaeis guineensis is a robust feeder of nutrients and necessitates the adjustment and adequate allocation of nutrients for optimum growth and yields. Therefore, information on leaf nutrient concentrations during the immature stage is essential for maximal OP yield at the mature stage. Currently, in Malaysia, fertilizer by the standard practice application (Treatment 1; T1) is considered a cost-effective fertilization practice in terms of fertilization cost and the overall cost per palm oil tree per hectare. However, there is an idea to further reduce the costs of fertilizers and labour per hectare to make it more cost-effective. Therefore, the present study aims to develop a novel biochemical fertilizer by testing the Universiti Putra Malaysia (UPM) biochemical fertilizer (Treatment 2; T2) in the immature OP. Since the use of T1 has been well established in Malaysia, the present study is to compare the leaflets’ nutrient levels (nitrogen (N), phosphorus (P), potassium (K), magnesium (Mg), calcium (Ca), and boron (B)) and vegetative parameters (frond length (FL), frond number of leaves (FNL), frond width (FW), frond thickness (FT), chlorophyll index (CI), and the canopy of immature OP by using T2 to compare with those in T1. This study was conducted 6 to 48 months after planting (MAP) at the Telang OP plantation, Kuala Lipis (Pahang), from January 2015 to December 2018. Based on the chemical levels of the pre-treatment soil samples collected at the weeded circle area in January 2015 in the two depths (0–15 cm and 15–30 cm), there was no significant difference (p > 0.05) in all 11 chemical parameters (pH, total N, organic carbon (Org C), total P, available P (Av P), cation exchange capacity (CEC), exchangeable K, (Ex K), exchangeable Ca (Ex Ca), exchangeable Mg (Ex Mg), exchangeable aluminium (Ex Al) and B between T1 and T2. This indicated that the chemical levels in the OP soils in both T1 and T2 would not be significant factors when T1 and T2 were applied. All six leaflets’ nutrient levels showed at least ‘Optimum’ or ‘Excessive’ compared to the established guideline using T1 and T2. Overall, there was no significant (p > 0.05) difference in all the above six leaflets’ nutrient levels and six vegetative parameters between T1 and T2 based on the t-Test, multiple linear stepwise regression analysis, and correlation analysis. These results suggested that rates of T1 and T2 applied in this study are enough to provide the amount of nutrients needed to support the OP vegetative growth during the immature period. The estimated cost savings for the combination of T2 fertilizers per hectare (RM 1113.43 or 250 USD) and reduction of the number of rounds (RM 133.85; or 30 USD) of T2 fertilizer application would give a sum of total cost savings of at least RM 1247.25 (280 USD) per hectare. If only based on the T2 fertilizer per hectare, the economic benefit of the total cost saving is estimated to be at least 10.6%. In summary, this study recommends the utilization of T2 as a novel, cost-effective, and alternative biochemical fertilizer treatment for better management of immature OP plantations in Malaysia. Full article

The catalytic hydrogenation of CO₂ to light olefins (C₂–C₄) is among the most practical approaches to CO₂ utilization as an essential industrial feedstock. To achieve a highly dispersed active site and enhance the reactivity of the reverse water–gas shift (RWGS) reaction, ABO₃-type perovskite catalysts Sr_1-xK_xFeO₃ with favorable thermal stability and redox activity are reported in this work. The role of K-substitution in the structure–performance relationship of the catalysts was investigated. It indicated that K-substitution expedited the oxygen-releasing process of the SrFeO₃ and facilitated the synchronous formation of active-phase Fe₃O₄ for the reverse water–gas shift (RWGS) reaction and Fe₅C₂ for the Fischer–Tropsch synthesis (FTS). At the optimal substitution amount, the conversion of CO₂ and the selectivity of light olefins achieved 30.82% and 29.61%, respectively. Moreover, the selectivity of CO was up to 45.57% even when H₂/CO₂=4 due to CO₂-splitting reactions over the reduced Sr₂Fe₂O₅. In addition, the reversibility of perovskite catalysts ensured the high dispersion of the active-phase Fe₃O₄ and Fe₅C₂ in the SrCO₃ phase. As the rate-determining step of the CO₂ hydrogenation reaction to light olefins over Sr_1-xK_xFeO₃ perovskite catalysts, FTS should be further tailored by partial substitution of the B site. In sum, the perovskite-derived catalyst investigated in this work provided a new idea for the rational design of a catalyst for CO₂ hydrogenation to produce light olefins. Full article

Six Gram-stain-negative, aerobic, rod-shaped, and motile by gliding bacterial strains were isolated from Pacific green and red algae. Phylogenetic analysis based on 16S rRNA gene sequences placed the novel strains into the genus Zobellia as a distinct evolutionary lineage close to Zobellia nedashkovskayae Asnod2-B07-B^T and Zobellia laminariae KMM 3676^T sharing the highest similarity of 99.7% and 99.5%, respectively. The average nucleotide identity and the average amino acid identity values between strains 36-CHABK-3-33^T and Z. nedashkovskayae Asnod2-B07-B^T and Z. laminariae KMM 3676^T were 89.7%/92.9% and 94.2%/95.8%, respectively. The digital DNA–DNA hybridization values based on the draft genomes between strains 36-CHABK-3-33^T and Z. nedashovskayae Asnod2-B07-B^T and Z. laminariae KMM 3676^T were 39.5 ± 2.5% and 59.6 ± 2.7%, respectively. Multilocus sequence analysis based on house-keeping genes (dnaK, gyrB, pyrH, recA and topA) assigned the alga-associated isolates to the same species, which clustered separately from the recognized species of the genus Zobellia. The strains under study grew at 4–32 °C and with 0.5–8% NaCl and decomposed aesculin, gelatin, DNA, and Tweens 20 and 80, and weakly agar. The DNA G+C content was 36.7% calculated from genome sequence analysis for the strain 36-CHABK-3-33^T. The predominant fatty acids of strain 36-CHABK-3-33^T (>5% of the total fatty acids) were iso-C_17:0 3-OH, summed feature 3 (comprising C_16:1ω7c and/or iso-C_15:0 2-OH fatty acids), iso-C_15:0, iso-C_15:1 G, and C_15:0. The major polar lipids were phosphatidylethanolamine, three unidentified lipids, and two unidentified aminolipids. The only detected respiratory quinone was MK-6. The significant molecular distinctiveness between the novel isolates and their nearest neighbor was strongly supported by differences in physiological and biochemical tests. Therefore, the six novel strains represent a novel species of the genus Zobellia, for which the name Zobellia barbeyronii sp. nov. is proposed. The type strain is 36-CHABK-3-33^T (= KACC 21790^T = KMM 6746^T). Full article