Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline

Search Results (154)

Search Parameters:
Keywords = Achromobacter

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
15 pages, 1102 KB  
Article
Comparative Secondary Metabolite Analysis and Antimicrobial Assessment of Agastache foeniculum (Pursh) Kuntze Leaf and Flower Extracts
by Judit Csabai, Oleksandra Kolesnyk, Maryna Kryvtsova, Oleh Kolesnyk, Judit Dobránszki, Zsolt Tibor Hörcsik, Béla Szabó, Edit Kosztyuné Krajnyák and Zoltán Cziáky
AppliedChem 2026, 6(3), 42; https://doi.org/10.3390/appliedchem6030042 - 1 Jul 2026
Viewed by 142
Abstract
Agastache foeniculum (Pursh) Kuntze, a member of the Lamiaceae family, is a phytochemically rich yet underexplored species with potential biomedical applications. This study aimed to provide an organ-specific chemical characterization of its secondary metabolites and to evaluate the antimicrobial potential of ethanolic extracts [...] Read more.
Agastache foeniculum (Pursh) Kuntze, a member of the Lamiaceae family, is a phytochemically rich yet underexplored species with potential biomedical applications. This study aimed to provide an organ-specific chemical characterization of its secondary metabolites and to evaluate the antimicrobial potential of ethanolic extracts derived separately from its leaves and flowers. Using UHPLC-MS/MS, we identified a total of 54 compounds, including phenolic acids and flavonoids. In total, 35 compounds in the flower extract and 38 in the leaf extract were reported here for the first time. The antimicrobial activity of both extracts was tested against six multidrug-resistant (MDR) clinical bacterial isolates (Staphylococcus aureus, Enterococcus faecalis, Escherichia coli, Citrobacter freundii, Achromobacter xylosoxidans, and Acinetobacter baumannii) using seven concentration levels (12.5–87.5%). While the leaf extract showed limited antibacterial effects, the flower extract demonstrated stronger, concentration-dependent inhibitory effects. At concentrations of 62.5% and above, it markedly reduced viable bacterial counts in all tested MDR strains. These findings highlight the importance of organ-specific phytochemical analysis in medicinal plants and suggest that A. foeniculum, particularly its flowers, may serve as a promising source of bioactive compounds for further antimicrobial research and development. Full article
Show Figures

Figure 1

15 pages, 1475 KB  
Article
High-Touch, High-Risk: An Exploratory Microbiome Analysis of Hospital Wheelchairs
by Luca Dalle Carbonare, Anna Vareschi, Kevin Dervishi, Michela Deiana, Elena Locatelli, Arianna Minoia, Francesca Cristiana Piritore, Alessandra Ruggiero, Ilda Czobor Barbu, Donato Zipeto, Chiara Piubelli and Maria Teresa Valenti
Pathogens 2026, 15(7), 693; https://doi.org/10.3390/pathogens15070693 - 30 Jun 2026
Viewed by 241
Abstract
In this exploratory pilot study, quantitative analyses were performed on seven leather wheelchairs and the protective barrier was evaluated on three leather wheelchairs, while shotgun metagenomic sequencing (Illumina and Oxford Nanopore) was conducted on pooled samples obtained from seven leather and three fabric [...] Read more.
In this exploratory pilot study, quantitative analyses were performed on seven leather wheelchairs and the protective barrier was evaluated on three leather wheelchairs, while shotgun metagenomic sequencing (Illumina and Oxford Nanopore) was conducted on pooled samples obtained from seven leather and three fabric wheelchairs to characterize microbial DNA recovered from wheelchair surfaces under routine clinical conditions. Microbial DNA and biomass were detected on all sampled surfaces, with median DNA concentrations of approximately 0.015 ng/µL, median cell counts of approximately 4.8 × 105 cells/mL, and median OD600 values of approximately 0.038, although variability among wheelchairs was observed. NGS analysis revealed heterogeneous microbial communities composed mainly of taxa associated with human skin microbiota and environmental sources. Opportunistic taxa including Escherichia coli, Staphylococcus haemolyticus, Achromobacter xylosoxidans, and Clostridioides difficile DNA were detected. Differences in microbial composition were observed between the pooled fabric and leather samples, with fabric samples characterized by the dominance of specific taxa and leather samples exhibiting a more heterogeneous microbial profile. In addition, median DNA concentration, cell counts, and OD600 values were reduced by approximately 98–100% on the protective barrier compared with uncovered wheelchair surfaces, with statistically significant differences between conditions. Overall, these findings suggest that hospital wheelchairs may harbor measurable levels of microbial biomass and microbial DNA despite routine sanitation procedures. Lower contamination levels were observed on the protective barrier under the conditions tested. Due to the exploratory nature of the study, the small sample size, and the use of pooled samples for metagenomic analyses, these observations should be interpreted with caution and require confirmation in larger studies. Full article
(This article belongs to the Section Bacterial Pathogens)
Show Figures

Graphical abstract

19 pages, 1948 KB  
Article
Metatranscriptomic Insights into Microbial Responses of a Bacterial Consortium from Activated Sludge at the Zeekoegat Wastewater Treatment Plant to Perfluorooctane Sulfonate and Perfluorooctanoic Acid
by Muyasu Grace Kibambe, Jitendra Keshri and Maggy Ndombo Benteke Momba
Water 2026, 18(11), 1367; https://doi.org/10.3390/w18111367 - 4 Jun 2026
Viewed by 263
Abstract
Perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) are persistent pollutants resistant to conventional treatment processes and pose significant environmental risks. The aim of this study was to comparatively evaluate the metatranscriptomic responses of activated sludge bacterial communities to PFOS and PFOA exposure at [...] Read more.
Perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) are persistent pollutants resistant to conventional treatment processes and pose significant environmental risks. The aim of this study was to comparatively evaluate the metatranscriptomic responses of activated sludge bacterial communities to PFOS and PFOA exposure at environmentally relevant (150 ng/L) and elevated (1050 ng/L) concentrations. Activated sludge from the Zeekoegat Wastewater Treatment Plant (Pretoria, South Africa) was used under aerobic conditions for 45 days. Taxonomic profiling revealed a Proteobacteria-dominated community with distinct pollutant-specific shifts. Under PFOA exposure, Pseudomonas dominated at low concentration, while Achromobacter and Burkholderia increased at higher levels. Under PFOS exposure, Kerstersia dominated at low concentration, whereas Comamonas, Sphingopyxis, and Polaromonas were enriched at higher concentration. Functional analysis revealed increased abundance of stress-response and metabolic pathways, including ABC transporters, chaperonins (GroEL), and β-oxidation. Overall, the results indicate a dose-dependent microbial adaptation, with pollutant type driving functional responses. These findings highlight pollutant-specific microbial responses and adaptation under PFAS exposure in activated sludge systems. These findings highlight pollutant-specific microbial strategies and the potential of activated sludge microbiomes in PFAS transformation processes. Full article
(This article belongs to the Special Issue Advances in Innovative Development of Wastewater Treatment Technology)
Show Figures

Figure 1

28 pages, 473 KB  
Review
Managing Pneumonia Due to Rare Non-Fermenting Gram-Negative Bacteria: Epidemiology, Risk Factors and Therapeutic Strategies
by Alessandro Capone, Francesca Gavaruzzi, Valentina Antonelli, Claudia Rotondo, Samir Al Moghazi, Emanuela Caraffa, Pierangelo Chinello, Carla Fontana and Stefania Cicalini
Antibiotics 2026, 15(5), 465; https://doi.org/10.3390/antibiotics15050465 - 4 May 2026
Cited by 1 | Viewed by 1284
Abstract
Pneumonia remains a leading cause of morbidity and mortality worldwide, with bacterial pathogens contributing significantly to its burden. While Pseudomonas aeruginosa and Acinetobacter baumannii complex are well-recognized non-fermenting Gram-negative bacteria (NFGNB) causing severe pneumonia, particularly in healthcare settings, an expanding array of other, [...] Read more.
Pneumonia remains a leading cause of morbidity and mortality worldwide, with bacterial pathogens contributing significantly to its burden. While Pseudomonas aeruginosa and Acinetobacter baumannii complex are well-recognized non-fermenting Gram-negative bacteria (NFGNB) causing severe pneumonia, particularly in healthcare settings, an expanding array of other, rarer NFGNB species is increasingly implicated. These species include, but are not limited to, Achromobacter spp., Ochrobactrum spp., Burkholderia spp., Aeromonas spp., Roseomonas spp., Elizabethkingia spp., Chryseobacterium spp. Alcaligenes spp., Ralstonia spp., Cupriavidus spp., Sphingomonas spp., Rhizobium spp., Empedobacter spp., and Brevundimonas spp. In this article we aim to provide a focused review of the contemporary epidemiology and specific risk factors for pneumonia caused by this diverse group of rare NFGNB, explicitly excluding P. aeruginosa, Stenotrophomonas maltophilia, and A. baumannii. We seek to delineate the emerging patterns of pneumonia associated with Achromobacter spp., Burkholderia spp., Aeromonas spp., Roseomonas spp., Elizabethkingia spp., Pandoraea spp., Sphingomonas spp., and K. gyiorum. Moreover, we discuss antimicrobial treatment strategies for pneumonia caused by rarer NFGNB including Ochrobactrum spp., Chryseobacterium spp., Alcaligenes spp., Ralstonia spp., Cupriavidus spp., Rhizobium spp., Empedobacter spp., and Brevundimonas spp. A deeper understanding of these specific epidemiological trends and risk factors is important for guiding precise diagnostic approaches, informing antimicrobial stewardship programs, and developing targeted infection prevention and control strategies with the aim of mitigating the impact of these challenging pathogens in the clinical setting. Full article
(This article belongs to the Section Antibiotic Therapy in Infectious Diseases)
Show Figures

Figure 1

18 pages, 2183 KB  
Article
Genome-Resolved Delineation of Three Novel Endophytic Achromobacter Species from Desert Medicinal Plants
by Khadija Ait Si Mhand, Salma Mouhib, Juan Carlos Fernández-Cadena and Mohamed Hijri
Microorganisms 2026, 14(5), 1019; https://doi.org/10.3390/microorganisms14051019 - 30 Apr 2026
Viewed by 516
Abstract
Endophytic bacteria from plants adapted to arid and semi-arid environments represent an underexplored reservoir of microbial diversity with potential agricultural applications. Here, we report a polyphasic taxonomic and genome-based characterization of Achromobacter sp. isolates recovered from root and foliar tissues of Citrullus colocynthis [...] Read more.
Endophytic bacteria from plants adapted to arid and semi-arid environments represent an underexplored reservoir of microbial diversity with potential agricultural applications. Here, we report a polyphasic taxonomic and genome-based characterization of Achromobacter sp. isolates recovered from root and foliar tissues of Citrullus colocynthis and Peganum harmala, two medicinal plants thriving under harsh environmental conditions. Whole-genome sequencing, phylogenomic analyses, average nucleotide identity (ANI), digital DNA–DNA hybridization (dDDH), multilocus sequence typing, and detailed phenotypic profiling revealed three previously undescribed species, for which we propose the names Achromobacter colocynthi sp. nov., Achromobacter maghribensis sp. nov., and Achromobacter semiaridum sp. nov. Genome assemblies were highly complete (98.7–99.2%) with minimal contamination (<1%), supporting robust taxonomic inference. All three species displayed ANI and dDDH values below accepted thresholds relative to their closest phylogenetic neighbors, despite partial inconsistencies in 16S rRNA similarity for one isolate, highlighting the value of genome-wide metrics for species delineation. Phylogenomic analyses placed the novel taxa within Achromobacter sp. as distinct evolutionary lineages. Phenotypic characterization indicated broad metabolic versatility, including utilization of carbohydrates, organic acids, and amino acids, tolerance to moderate salinity and acidic pH, and resistance to multiple antimicrobial compounds, traits likely linked to adaptation to endophytic lifestyles under semi-arid conditions. Beyond their taxonomic novelty, the isolates exhibited in vitro traits associated with plant adaptation and stress tolerance, including IAA production, ACC deaminase activity, and tolerance to Zn, Cu, and Cd. Genomic analyses further indicated functions related to phosphate acquisition and stress response. These findings expand the taxonomic framework of Achromobacter sp., establish C. colocynthis and P. harmala as reservoirs of novel endophytic bacteria, and highlight their potential relevance for agricultural biotechnology in stress-prone environments. Full article
(This article belongs to the Special Issue Molecular Studies of Microorganisms in Plant Growth and Utilization)
Show Figures

Figure 1

19 pages, 3051 KB  
Article
Differential Evolution of Achromobacter spp. Isolates in Upper and Lower Airways of People with Cystic Fibrosis
by Laura Veschetti, Angela Sandri, Giulia Maria Saitta, Marzia Boaretti, Paola Melotti, Cristina Cigana, Alessandra Bragonzi, Maria M. Lleò, Giovanni Malerba and Caterina Signoretto
Pathogens 2026, 15(5), 452; https://doi.org/10.3390/pathogens15050452 - 22 Apr 2026
Viewed by 477
Abstract
Achromobacter spp. are opportunistic pathogens in people with cystic fibrosis (PwCF), yet the role of the upper airways in their persistence and adaptation remains poorly understood. We investigated whether the sinonasal compartment may act as reservoir and evolutionary niche for Achromobacter spp. during [...] Read more.
Achromobacter spp. are opportunistic pathogens in people with cystic fibrosis (PwCF), yet the role of the upper airways in their persistence and adaptation remains poorly understood. We investigated whether the sinonasal compartment may act as reservoir and evolutionary niche for Achromobacter spp. during airway infection. Twenty-two isolates obtained from paired nasal lavage and sputum samples of seven PwCF were analysed by whole-genome sequencing. Within each PwCF, identical clone types were detected in both airway compartments, supporting bacterial exchange between upper and lower airways. Despite clonal relatedness, substantial genomic diversification was observed between paired isolates. Genomic signatures indicative of elevated mutation rates were detected in a high number of isolates (73%) and in both airway compartments, highlighting widespread genomic diversification across the respiratory tract. Mobilome analysis revealed compartment-specific variations in insertion sequences, prophages, and integrative elements, suggesting genome plasticity. Additionally, mutation in an aspartate kinase gene was consistently associated with loss of biofilm formation in vitro, highlighting a potential link between this pathway and biofilm phenotype. Overall, our findings indicate that upper and lower airways represent interconnected but partially independent ecological niches where Achromobacter populations can diverge during colonization, supporting the view that both compartments contribute to their persistence and evolution in CF airways. Full article
(This article belongs to the Section Bacterial Pathogens)
Show Figures

Figure 1

10 pages, 217 KB  
Article
Cefiderocol Is Effective In Vitro Against Numerous Gram-Negative Species Isolated from Keratitis Patients
by Jonathan B. Mandell, Robert M. Q. Shanks and Eric G. Romanowski
Antibiotics 2026, 15(4), 348; https://doi.org/10.3390/antibiotics15040348 - 29 Mar 2026
Viewed by 561
Abstract
Background: To evaluate the potential of cefiderocol as a topical ophthalmic antibiotic by determining the susceptibility of keratitis isolates from an extensive panel of Gram-negative bacterial species to this siderophore-cephalosporin class antibiotic. Methods: Minimum Inhibitory Concentrations (MICs) of cefiderocol were determined by the [...] Read more.
Background: To evaluate the potential of cefiderocol as a topical ophthalmic antibiotic by determining the susceptibility of keratitis isolates from an extensive panel of Gram-negative bacterial species to this siderophore-cephalosporin class antibiotic. Methods: Minimum Inhibitory Concentrations (MICs) of cefiderocol were determined by the broth dilution method using iron-depleted, cation-adjusted Mueller–Hinton broth. The following Gram-negative bacteria were included: Acinetobacter baumannii (n = 13), Achromobacter xylosoxidans (n = 14), Escherichia coli (n = 15), Klebsiella aerogenes (n = 14), Klebsiella pneumoniae (n = 13), Klebsiella oxytoca (n = 14), Moraxella spp. (n = 15), Proteus mirabilis (n = 13), Pseudomonas aeruginosa (n = 17), Serratia marcescens (n = 14) and Stenotrophomonas maltophilia (n = 12). MIC90 values were calculated for each of the species. Results: MIC90 values (µg/mL): A. baumannii (0.5), A. xylosoxidans (0.25), E. coli (0.5), K. aerogenes (1.0), K. oxytoca (0.5), K. pneumoniae (0.5), Moraxella spp. (0.5), P. mirabilis (0.25), P. aeruginosa (0.5), S. marcescens (0.5), and S. maltophilia (0.25). In total, 100% of the isolates were determined to be susceptible to cefiderocol in vitro except for A. xylosoxidans and Moraxella spp., for which there are no established breakpoints for cefiderocol. Conclusions: Cefiderocol demonstrated in vitro activity against the tested panel of Gram-negative keratitis isolates. The results of this study suggest cefiderocol may be useful for the treatment of keratitis caused by numerous Gram-negative pathogens. Further development of cefiderocol for the topical treatment of Gram-negative keratitis is indicated. Full article
(This article belongs to the Special Issue Antimicrobial Treatment and Antibiotic Use in Ophthalmology)
12 pages, 2960 KB  
Systematic Review
Spondylodiscitis Following Oxygen–Ozone Therapy: A Case Report of Lactobacillus iners Infection and a Systematic Literature Review
by Calogero Velluto, Giovan Giuseppe Mazzella, Michele Inverso, Maria Ilaria Borruto, Andrea Perna, Riccardo Totti, Laura Scaramuzzo and Luca Proietti
Diseases 2026, 14(3), 115; https://doi.org/10.3390/diseases14030115 - 23 Mar 2026
Viewed by 668
Abstract
Background: Oxygen–ozone (O2–O3) therapy is a minimally invasive treatment for discogenic lumbar pain. Although rare, spinal infections—specifically spondylodiscitis—have been reported following intradiscal injections. To date, Lactobacillus iners has not been described as a causative agent in this context. Case [...] Read more.
Background: Oxygen–ozone (O2–O3) therapy is a minimally invasive treatment for discogenic lumbar pain. Although rare, spinal infections—specifically spondylodiscitis—have been reported following intradiscal injections. To date, Lactobacillus iners has not been described as a causative agent in this context. Case Presentation: A 55-year-old immunocompetent woman presented with progressive lumbosciatica and elevated inflammatory markers three months after intradiscal O2–O3 therapy. MRI revealed L4–L5 spondylodiscitis with paravertebral involvement. Surgical biopsy confirmed L. iners as the pathogen. She underwent decompression and received targeted intravenous antibiotics, achieving full clinical and radiological recovery. Methods: A systematic literature review was performed using PubMed, MEDLINE, and Scopus to identify reports of spondylodiscitis following oxygen–ozone therapy. Six cases were included based on predefined inclusion criteria. Results: The 8 identified cases involved a range of pathogens, including Staphylococcus aureus, Streptococcus beta-haemolyticus, Escherichia coli, Achromobacter xylosoxidans, Mycobacterium abscessus, and Streptococcus intermedius, and one culture-negative infection. Clinical presentations varied from radiculopathy to sepsis. Management strategies encompassed both conservative (antibiotics alone) and surgical approaches, depending on neurological status and abscess formation. Outcomes were favorable in all cases except one fatality. Conclusions: This report is the first to describe L. iners spondylodiscitis in an immunocompetent patient following O2–O3 therapy. Clinicians should vigilantly evaluate post-infiltration spinal infections, maintain a low threshold for imaging and biopsy, and implement pathogen-targeted antibiotic regimens, with surgical intervention as needed. Full article
Show Figures

Figure 1

23 pages, 3713 KB  
Article
Plant Growth Promoting Rhizobacteria Favor Vegetative Development and Optimize Nutrient Uptake in Lisianthus
by Tsujmejy Gómez-Navor, Fernando Carlos Gómez-Merino, Juan José Almaraz-Suárez, Marco Polo Carballo-Sánchez, J. Cruz García-Albarado and Libia Iris Trejo-Téllez
Horticulturae 2026, 12(3), 350; https://doi.org/10.3390/horticulturae12030350 - 13 Mar 2026
Viewed by 1464
Abstract
Lisianthus [Eustoma grandiflorum (Raf.) Shinners] is among the 10 most produced and marketed cut flowers in the world. However, its slow growth represents a challenge for its production. This study evaluated the efficiency of rhizobacterial strains in vegetative growth and nutrient acquisition [...] Read more.
Lisianthus [Eustoma grandiflorum (Raf.) Shinners] is among the 10 most produced and marketed cut flowers in the world. However, its slow growth represents a challenge for its production. This study evaluated the efficiency of rhizobacterial strains in vegetative growth and nutrient acquisition in lisianthus plants. Freshly germinated seeds of lisianthus cv. Mariachi Blue Double were used. Seven rhizobacterial strains and two controls (sterile distilled water and nutrient broth) were evaluated in a completely randomized design. Replication varied among treatments and variables: shoot growth traits were assessed on 10–12 plants per treatment, root biomass on a destructive subsample of six plants per treatment and shoot nutrient contents on four composite samples per treatment. Measurements taken 149 days after sowing showed that plants inoculated with the strains Acinetobacter vivianii C48, Achromobacter xylosoxidans C56, and Arthrobacter pokkalii JLB4 had greater height, leaf area, leaf number, and fresh and dry biomass, both aerial and in the root. These strains also enhanced N and P uptake in shoot tissues. In contrast, the Bacillus pumilus strain R44 significantly decreased height and leaf number. The results suggest that strains C48, C56 and JLB4 can stimulate nutrition, accelerate plant growth, and shorten the vegetative phase in lisianthus. Full article
Show Figures

Figure 1

28 pages, 2738 KB  
Article
Sulfur Oxidation by New and Non-Canonical Bacteria in a Subsurface Flow Constructed Wetland Treating Domestic Wastewater
by Maricela Arteaga-Mejía, Alida Velázquez-Guadalupe, Elizabeth Castillo-Villanueva and Jorge Valdivia-Anistro
Microorganisms 2026, 14(3), 565; https://doi.org/10.3390/microorganisms14030565 - 2 Mar 2026
Viewed by 1152
Abstract
Constructed wetlands (CW) are a low-cost alternative for wastewater treatment, where microbial communities play a key role in the biotransformation of pollutants, including sulfur compounds. This study reports the identification of cultivable bacteria involved in the sulfur cycle (SC) in a subsurface-flow CW [...] Read more.
Constructed wetlands (CW) are a low-cost alternative for wastewater treatment, where microbial communities play a key role in the biotransformation of pollutants, including sulfur compounds. This study reports the identification of cultivable bacteria involved in the sulfur cycle (SC) in a subsurface-flow CW located in Tetipac, Mexico. Water, sediment, and rhizosphere samples were collected during four sampling events and plated on a mineral medium with thiosulfate. Colony-forming units were quantified, and 15 isolates were genetically identified by partial 16S rRNA gene sequencing. Bacterial abundance was higher in the rhizosphere, and the cultivable fraction was dominated by Pseudomonadota, particularly Gammaproteobacteria, accompanied by Bacteroidota and several previously uncultured lineages; genera such as Achromobacter, Chitinophaga, Enterobacter, Pseudomonas, Raoultella and Stenotrophomonas were recovered. Biochemical assays revealed heterogeneous metabolic profiles, with several isolates showing activities comparable to canonical sulfur-oxidizing bacteria (SOB). Most isolates oxidized thiosulfate and a substantial proportion oxidized elemental sulfur, with higher metabolic performance in rhizosphere isolates and a positive association with BOD5 removal. Overall, these results indicate that the Tetipac wetland harbors a cultivable community of largely non-canonical SOB whose mixotrophic versatility and spatial differentiation suggest a key contribution to the SC and organic matter degradation in CW. Full article
(This article belongs to the Special Issue Microbial Diversity in Different Environments)
Show Figures

Figure 1

22 pages, 1313 KB  
Article
Antimicrobial Resistance in Bacterial Strains of Agricultural Interest: Predictions Based on Genomic Data
by Eloísa Pajuelo, Manuel Medina-Rodríguez, Noris J. Flores-Duarte, Bouchra Doukkali, Jennifer Mesa-Marín, Ignacio D. Rodríguez-Llorente and Salvadora Navarro-Torre
Antibiotics 2026, 15(1), 14; https://doi.org/10.3390/antibiotics15010014 - 20 Dec 2025
Viewed by 1372
Abstract
Background: Plant growth promoting bacteria (PGPB) are non-pathogenic bacteria that enhance plant growth through several mechanisms such as nutrient mobilization, phytohormones production, defense against phytopathogens, and alleviation of plant stress. Hence, these bacteria are used as ecologic biofertilizers to diminish the use [...] Read more.
Background: Plant growth promoting bacteria (PGPB) are non-pathogenic bacteria that enhance plant growth through several mechanisms such as nutrient mobilization, phytohormones production, defense against phytopathogens, and alleviation of plant stress. Hence, these bacteria are used as ecologic biofertilizers to diminish the use of agrochemicals. Nevertheless, some PGPR strains can harbor antibiotic resistance determinants and the possibility of spreading them upon releasing these bacteria is an environmental concern. Objectives: The objectives of this work are as follows: (1) evaluating the antibiotic resistance in a collection of PGPB, and (2) prospecting antibiotic resistance genes in the genomes of PGPB in order to predict the risk for antibiotic resistance dissemination. Methods: The resistance towards 12 antibiotics in a collection of 20 PGPB (10 Gram-positive and 10 Gram-negative strains) has been evaluated using disk diffusion in agar, broth microdilution, and agar dilution tests. In addition, the whole genomes of six strains have been sequenced in order to find the correlation between the resistance levels and AMR genes by using bioinformatic tools. Results: The results indicated a wide range of halo diameters, but in general Gram-negatives showed higher resistance compared to Gram-positives. The four most resistant strains and the two more susceptible strains were selected for further analysis and sequencing the whole genomes. The resistant strains were identified as Achromobacter spanius N6, Leclercia adecarboxylata H17, Priestia aryabhattai strain MHA1, and Bacillus cereus N25. The susceptible strains were identified as Pantoea sp. S3 and Priestia megaterium MS4. Mining antibiotic resistance genes in the genomes confirmed the existence of resistance determinants responsible for the phenotypic behavior, indicating the potential of genomics for predicting antibiotic resistance in PGPB. However, there was not an exact correspondence between the presence of the genes and the level of resistance, suggesting the existence of additional regulatory mechanisms. Conclusions: The information obtained by genomics must be complemented experimentally by tests for antibiotic resistance determination. In this regard, it is necessary to develop a global antibiotic resistance database for PGPB, due to the difficulty of interpretation of the antibiotic susceptibility tests after comparing the experimental results with those tabulated for clinical species. Full article
Show Figures

Figure 1

13 pages, 5739 KB  
Article
Bacterial Microbiota in Soil Amended with Deoxynivalenol-Contaminated Wheat
by Emmanuel W. Bumunang, Kim Stanford, Yuxi Wang, Benjamin Ellert, Matthew Waldner and Trevor W. Alexander
Toxins 2025, 17(12), 565; https://doi.org/10.3390/toxins17120565 - 22 Nov 2025
Viewed by 917
Abstract
Feed contaminated with the mycotoxin deoxynivalenol (DON) can negatively impact livestock health and performance. Bacteria capable of degrading DON present a method of mitigating its harmful effects. This study aimed to identify microbial consortia from soil samples that could degrade DON. Soil from [...] Read more.
Feed contaminated with the mycotoxin deoxynivalenol (DON) can negatively impact livestock health and performance. Bacteria capable of degrading DON present a method of mitigating its harmful effects. This study aimed to identify microbial consortia from soil samples that could degrade DON. Soil from central (Lacombe, LA) and southern (Lethbridge, LE) Alberta were used as microbial inoculant. The soils were mixed with DON-contaminated wheat (18 ppm/kg) on day 0, and each soil type was divided into triplicate pots (180 g) and placed in a controlled environment for 32 d. Control pots of each soil type were included, which contained no DON-contaminated wheat. On days 0, 7, 14, and 32, 1 g subsamples were collected from pots, serially diluted in a limited medium containing DON (10 µg/mL) as the only carbon source, and incubated for 2 weeks (30 °C). DNA was extracted from the pots across time, as well as the subsample consortia grown in DON-amended medium, and was analyzed for bacterial changes after 16S rRNA gene sequencing. The relative abundance of bacterial genera in soil samples after enrichment with DON-contaminated wheat increased across time compared to the baseline day 0 time point. DON-degrading activity (26%) was only detected in LA soil suspension on day 7, and was highest after 14 days of incubation. The most abundant bacteria in the LA DON-degrading consortia belonged to the Pseudomonas (8.8%), Delftia (7.4%), Acinetobacter (6.4%), Comamonas (5.7%), Stenotrophomonas (5.5%), Shinella (5.5%), Ensifer (5.1%), Agrobacterium (5.0%), Achromobacter (4.7%), and Rhizobium (3.7%) genera. Pseudomonas aeruginosa (n = 9) and Serratia liquefaciens (n = 3) strains isolated from the LA consortia did not degrade DON. Overall, this study shows that the soil contained bacteria capable of degrading DON; however, variation existed depending on the soil’s source. Full article
Show Figures

Figure 1

12 pages, 603 KB  
Article
Human Herpes Virus—Six Related Clinical and Functional Implications in Lung Transplant Patients: Bronco Alveolar Lavage Analysis, Coinfections, Rejection, and Survival
by Paolo Solidoro, Antonio Curtoni, Costanza Perotti, Camilla Perotti, Nour Shbaklo, Francesca Sidoti, Mauro Mangiapia, Francesco Giuseppe De Rosa, Silvia Corcione, Massimo Boffini, Matteo Marro, Cristina Costa and Rocco Francesco Rinaldo
Pathogens 2025, 14(11), 1157; https://doi.org/10.3390/pathogens14111157 - 13 Nov 2025
Viewed by 889
Abstract
Human herpesvirus 6 (HHV-6) is a common virus that can reactivate in immunocompromised patients, including lung transplant (LT) recipients. This study aimed to evaluate the clinical and functional implications of HHV-6 infection in LT patients through a retrospective analysis of 175 individuals who [...] Read more.
Human herpesvirus 6 (HHV-6) is a common virus that can reactivate in immunocompromised patients, including lung transplant (LT) recipients. This study aimed to evaluate the clinical and functional implications of HHV-6 infection in LT patients through a retrospective analysis of 175 individuals who underwent lung transplantation at the City of Health and Sciences of Turin between 2014 and 2023. Surveillance bronchoscopies—including bronchoalveolar lavage (BAL) and transbronchial biopsies—were performed at scheduled intervals over a two-year period to detect HHV-6 and other pathogens, and to assess acute rejection. Spirometries were performed to evaluate graft function. Among the cohort, 33% of 822 BAL samples tested were positive for HHV-6, with a notable association between high viral load (≥500 copies/mL) and the development of post-transplant lymphoproliferative disorder (PTLD) (13% vs. 1%, p = 0.02) at 1 month and (9% vs. 1%, p = 0.026) at 12 months. Co-infection with CMV (78% in positives vs. 55% in negatives; p = 0.006), Epstein–Barr virus (EBV) (35% vs. 16%; p = 0.010), and bacterial and fungal infection (specifically, a higher rate of isolation of Achromobacter xylosoxidans (13%), p = 0.010) was frequently observed in conjunction with HHV-6 positivity. Notably, patients with at least one HHV-6 positive BAL exhibited a significant reduction in forced vital capacity (FVC) at multiple follow-up points, FVC 82% in positives vs. 92% in negatives (p = 0.038) at 4 months and 87% vs. 98% p = 0.033 at 8 months and 87% vs. 99% p = 0.038 at 24 months. No direct associations with acute rejection or overall survival were found. By means of this study, we provide a wide overview of HHV-6 in lung transplant recipients, filling in a gap of evidence in the field. We report a remarkable incidence and a significant association with acknowledged clinically relevant viral infections, PTLD, and functional tests decline, with no association with mortality. Full article
Show Figures

Figure 1

15 pages, 1865 KB  
Article
Molecular Epidemiological Surveillance of Carbapenem-Resistant Gram-Negative Bacteria in Southern Lebanon
by Anwar Al Souheil, Hadi Hussein, Ziad Jabbour, Sara Barada, Jose-Rita Gerges, Ghada Derbaj, Abdallah Kurdi, Hassan Jamil Kazma, Nour Nahouli, Ali Hasan Najem, Abdallah Medlej, Wael Zorkot, Rana El Hajj, Mahmoud I. Khalil, Ghassan M. Matar and Antoine Abou Fayad
Antibiotics 2025, 14(11), 1124; https://doi.org/10.3390/antibiotics14111124 - 7 Nov 2025
Cited by 1 | Viewed by 1441
Abstract
Introduction: Carbapenem-resistant Gram-negative bacteria (CR-GNB) are rapidly spreading pathogens that increase morbidity and mortality in hospital settings and significantly restrict available treatment options worldwide. The lack of molecular epidemiological data and the limited use of next-generation sequencing (NGS) in South Lebanon have hindered [...] Read more.
Introduction: Carbapenem-resistant Gram-negative bacteria (CR-GNB) are rapidly spreading pathogens that increase morbidity and mortality in hospital settings and significantly restrict available treatment options worldwide. The lack of molecular epidemiological data and the limited use of next-generation sequencing (NGS) in South Lebanon have hindered comprehensive surveillance efforts. This study represents the first molecular characterization of CR-GNB in this region. Methods: A total of 477 clinical Gram-negative bacterial isolates were collected from intensive care unit (ICU) patients admitted to various hospitals in South Lebanon in 2023. Of these, 131 CR-GNB were subjected to whole-genome sequencing using the Illumina MiSeq platform. K-mer-based species identification, multilocus sequence typing (MLST), antimicrobial resistance (AMR) gene profiling, and plasmid analysis were performed using multiple bioinformatic tools. Phylogenetic analysis was conducted using SaffronTree. Results: K-mer-based identification revealed that the predominant species among CR-GNB isolates were Pseudomonas spp. and Escherichia coli (26.7% each), followed by Klebsiella pneumoniae (19.8%), Acinetobacter baumannii (17.6%), Proteus mirabilis (4.6%), Enterobacter cloacae (2.3%), Achromobacter spp. (1.5%), and Citrobacter freundii (0.8%). Based on antimicrobial susceptibility testing, isolates were classified as follows: 0.8% as pan drug-resistant (PDR), 40.5% as extensively drug-resistant (XDR), and 52.7% as multidrug-resistant (MDR) and 6.1% as antimicrobial-resistant (AMR). All isolates harbored AMR genes, with the following distribution: 2% blaVIM, 5% blaNDM-1, 27% blaNDM-5, 65% blaOXA-type, and 1% blaDIM-1. Plasmid-associated AMR genes were detected in 58% of isolates; among these, 96% carried Inc-family plasmids, 57% Col plasmids, and 11% replication-associated elements (rep). Phylogenetic analysis demonstrated that certain isolates exhibited both hospital-specific and shared genetic profiles, indicating widespread dissemination across multiple healthcare facilities, as well as evidence of local emergence and ongoing transmission. Conclusions: The high prevalence of CR-GNB harboring resistance genes and plasmids underscores the urgent need for NGS-based genomic surveillance in South Lebanon. Implementing such strategies is essential for tracking resistance genes, identifying clonal outbreaks, and guiding effective infection control interventions to mitigate the spread of CR-GNB. Full article
Show Figures

Figure 1

24 pages, 3179 KB  
Article
Growth-Promoting Effects and Mechanisms of Synthetic Plant Growth-Promoting Rhizobacteria on Maize Seedlings
by Shuang Yu, Minlong Mao, Hengfei Zhang, Huanyu Song and Yu Sun
Microorganisms 2025, 13(11), 2460; https://doi.org/10.3390/microorganisms13112460 - 28 Oct 2025
Cited by 3 | Viewed by 1508
Abstract
With the development of microbial fertilizers, efforts have been made to enrich the strain resources of plant growth-promoting rhizobacteria (PGPR) in maize and to compare the growth-promoting effects of synthetic microbial communities (SynComs) with those of single strains. To achieve this, phenotypic measurements [...] Read more.
With the development of microbial fertilizers, efforts have been made to enrich the strain resources of plant growth-promoting rhizobacteria (PGPR) in maize and to compare the growth-promoting effects of synthetic microbial communities (SynComs) with those of single strains. To achieve this, phenotypic measurements and RNA sequencing (RNA-seq) were performed on maize roots treated with SynComs and single-strain bacterial suspensions, aiming to investigate the regulatory influence of PGPR on differential gene expression and key metabolic pathways in maize roots. In this study, 59 PGPR strains were selected, representing genera including Bacillus, Pseudomonas, Burkholderia sp., Curtobacterium pusillum, Acidovorax, Sphingobium, Mitsuaria, Bacterium, Rhodanobacter, Variovorax, Ralstonia, Brevibacillus, Terrabacter, Flavobacterium, Comamonadaceae, Achromobacter, Paraburkholderia, and Massilia. Based on the growth-promoting effects observed in pot experiments, optimal bacterial strains were selected according to the principles of functional complementarity and functional superposition to construct the SynCom. The selected strains included Burkholderia sp. A2, Pseudomonas sp. C9, Curtobacterium pusillum E2, and Bacillus velezensis F3. The results demonstrated that individual strains exerted measurable growth-promoting effects on seedlings; however, the growth-promoting capability of the SynCom was significantly stronger than that of single strains. The synthetic microbial community ALL group markedly increased root length, shoot fresh weight, shoot dry weight, number of branches, and number of root tips in maize seedlings. RNA-seq analysis of maize roots treated with the SynCom (ALL group) was conducted in comparison with CK, A2, C9, E2, and F3 treatment groups. A total of 5245 differentially expressed genes (DEGs) were identified, of which only 133 were common across treatments. GO and KEGG analyses revealed that DEGs were enriched in multiple biological processes, including cellular amide biosynthetic and metabolic processes, flavonoid biosynthetic and metabolic processes, carbohydrate metabolism, amino acid metabolism, lipid metabolism, and translation. The majority of enriched pathways were associated with primary and secondary metabolism, indicating that these bacterial strains promote plant growth by modulating a wide range of metabolic pathways in plant cells. Overall, this study provides a molecular framework for understanding the mechanisms underlying the growth-promoting effects of SynComs on maize roots and offers valuable insights for future research aimed at identifying key regulatory genes. Full article
(This article belongs to the Special Issue Plant Growth-Promoting Bacteria)
Show Figures

Figure 1

Back to TopTop