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21 pages, 4632 KiB  
Article
Eco-Friendly Preservation of Pharaonic Wooden Artifacts using Natural Green Products
by Neveen S. Geweely, Amira M. Abu Taleb, Paola Grenni, Giulia Caneva, Dina M. Atwa, Jasper R. Plaisier and Shimaa Ibrahim
Appl. Sci. 2024, 14(12), 5023; https://doi.org/10.3390/app14125023 - 9 Jun 2024
Cited by 5 | Viewed by 2216
Abstract
The biodeterioration of wooden cultural heritage is a severe problem worldwide and fungi are the main deteriorating agents. The identification of effective natural products, safer for humans and the environment, is a current challenge. Ten deteriorated archaeological objects (a wooden statue of a [...] Read more.
The biodeterioration of wooden cultural heritage is a severe problem worldwide and fungi are the main deteriorating agents. The identification of effective natural products, safer for humans and the environment, is a current challenge. Ten deteriorated archaeological objects (a wooden statue of a seated man, an anthropoid wooden coffin with a cartonnage mummy of Nespathettawi, and a wooden box of Padimen’s son), stored at the Egyptian museum in Cairo, were considered here. The wood species of the three most deteriorated objects were previously identified as Acacia nilotica, Ficus sycomorus, and Tamarix gennessarensis. Twenty-six fungal species were isolated and identified from the wooden objects and the four most frequent species belonged to the genus Aspergillus. Fourteen fungal species among those isolated showed the greatest biodeterioration activity on the experimental wood blocks of the archaeological objects. The antifungal activities of several eco-friendly plant essential oils (from cinnamon, eucalyptus, frankincense, geranium, lavender, lemongrass, menthe, rosemary, tea tree, and thyme) and plant extracts (from basil, eucalyptus, henna, melia, and teak) were tested against the fungal species with the greatest biodeterioration activity. The essential oils (Eos) were more effective than the plant extracts. Thyme EO, followed by geranium and cinnamon ones, was the most active (minimum inhibitory concentrations: 0.25–1 µL/mL). These EO; also showed inhibitory effects on the enzymatic activities (cellulase, amylase, and protease) of the four most dominant fungal species. Thymol and p-cymene were the two main components of thyme oil, while geraniol and beta-citronellol were those of geranium oil; eugenol and caryophyllene were those of the cinnamon EO. Thyme oil applied to the most deteriorated experimental aged A. nilotica wooden cubes inoculated with the four highly frequent fungal species was effective in wood preservation. Moreover, no significant interference was observed in the wood before and after thyme treatment. Thyme oil seems to be a promising eco-friendly antifungal agent for the preservation of archaeological wooden artefacts. Full article
(This article belongs to the Section Applied Microbiology)
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16 pages, 4162 KiB  
Article
Potential Distribution Projections for Senegalia senegal (L.) Britton under Climate Change Scenarios
by Jiaqi Fang, Jianfei Shi, Ping Zhang, Minghao Shao, Na Zhou, Yongdong Wang and Xinwen Xu
Forests 2024, 15(2), 379; https://doi.org/10.3390/f15020379 - 18 Feb 2024
Cited by 4 | Viewed by 2244
Abstract
The gum acacia Senegalia senegal (L.) Britton (Fabales: Fabaceae) is a drought-tolerant plant belonging to the genus Acacia of the Leguminosae family, possessing significant economic and ecological value. Despite its importance, there is a knowledge gap regarding the potential impact of climate change [...] Read more.
The gum acacia Senegalia senegal (L.) Britton (Fabales: Fabaceae) is a drought-tolerant plant belonging to the genus Acacia of the Leguminosae family, possessing significant economic and ecological value. Despite its importance, there is a knowledge gap regarding the potential impact of climate change on the distribution of S. senegal, crucial for the conservation of plant resources and optimizing its use in introductory silviculture. In this study, we selected 23 environmental variables and utilized the optimized maximum entropy (MaxEnt) model to analyze the key environmental factors affecting the distribution of S. senegal worldwide and simulate the current and future distribution range of S. senegal in Pakistan under the SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5 climate change scenarios. The results highlight key environmental factors influencing the distribution of S. senegal, including BIO3 (isothermally), BIO4 (coefficient of seasonal variation of temperature), BIO11 (mean temperature of the coldest season), and BIO12 (annual precipitation). Regions with higher and less fluctuating temperatures exhibit a higher potential for S. senegal distribution. Currently, suitable habitats of S. senegal are concentrated in the southern region of Pakistan, covering provinces such as Punjab, Sindh, and Balochistan, with highly suitable habitats accounting for 6.06% of the total area. Under the current climatic conditions, this study identifies the spatial patterns of suitable habitats and their concentration in specific regions. With climate change, a notable expansion of suitable habitats towards higher latitudes is observed, with the most significant expansion under the extremely severe climate change scenario (SSP5-8.5), reaching 223.45% of the current level. The results of this study enhance our understanding of the dynamics of S. senegal distribution under climate change and offer valuable insights into the long-term introduction of S. senegal for afforestation and soil conservation in Pakistan. This study provides theoretical support for the sustainable development of the local ecosystem and socio-economy, emphasizing the importance of proactive measures to adapt to changing climatic conditions. Full article
(This article belongs to the Section Forest Meteorology and Climate Change)
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13 pages, 4520 KiB  
Article
Comparative Analyses of Acacia Plastomes to Detect Mutational Hotspots and Barcode Sites for the Identification of Important Timber Species
by Weixiong Li, Yongyao Li, Luke R. Tembrock, Zhiqiang Wu, Xuezhu Liao and Shuo Zhang
Forests 2024, 15(2), 306; https://doi.org/10.3390/f15020306 - 5 Feb 2024
Viewed by 1474
Abstract
The genus Acacia is a crucial source of industrial papermaking and timber, possessing significant economic value. Due to their nitrogen-fixing ability, rapid growth, and high tolerance to stress, Acacia species have become integral to short-term industrial timber forests, particularly in southern China and [...] Read more.
The genus Acacia is a crucial source of industrial papermaking and timber, possessing significant economic value. Due to their nitrogen-fixing ability, rapid growth, and high tolerance to stress, Acacia species have become integral to short-term industrial timber forests, particularly in southern China and various other regions worldwide. Nevertheless, comparative genomic analyses of Acacia species remain limited, impeding the development of molecular markers for identifying and distinguishing between distinct Acacia species as well as distinguishing their wood counterparts from other tree species. To address this gap, we generated plastomic sequences from eight species commonly cultivated in Chinese plantation forests and compared them with existing data. Our findings revealed a generally conserved structure and gene content within the plastid genomes of Acacia. Notably, the dN/dS ratio of genes from distinct functional groups varied, particularly between ribosomal proteins and photosynthesis genes. Furthermore, phylogenetic analyses and sequence comparisons suggest that the introduction of Acacia to China may have been less diverse than previously thought or that interspecies introgression has occurred more frequently than previously documented. This study offers a valuable starting point for future research in this area and for improving timber quality through marker-assisted breeding. Full article
(This article belongs to the Special Issue DNA Barcoding for Species Identification of Forest Organisms)
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62 pages, 14735 KiB  
Article
The Fabaceae in Northeastern Mexico (Subfamily Caesalpinioideae, Mimosoideae Clade, Tribes Mimoseae, Acacieae, and Ingeae)
by Eduardo Estrada-Castillón, José Ángel Villarreal-Quintanilla, Gerardo Cuéllar-Rodríguez, Juan Antonio Encina-Domínguez, José Guadalupe Martínez-Ávalos, Arturo Mora-Olivo and Jaime Sánchez-Salas
Plants 2024, 13(3), 403; https://doi.org/10.3390/plants13030403 - 30 Jan 2024
Cited by 4 | Viewed by 4611
Abstract
A synoptic compendium of the legumes of the Mimosoideae clade in northeastern Mexico is presented for the first time, including changes in their botanical nomenclature and retypification of genera. Furthermore, based on new information recently published, the taxonomic limits of several new genera [...] Read more.
A synoptic compendium of the legumes of the Mimosoideae clade in northeastern Mexico is presented for the first time, including changes in their botanical nomenclature and retypification of genera. Furthermore, based on new information recently published, the taxonomic limits of several new genera segregated from Acacia (Acaciella, Mariosousa, Senegalia, and Vachellia) and Prosopis (Neltuma and Strombocarpa) are clarified and included. Based on field work, collection of botanical samples over the past 30 years, and reviewing botanical materials in national and international herbaria, we have completed the diversity of legumes of the Mimosoideae clade of northeastern Mexico. Three tribes (Acacieae, Ingeae, and Mimosaeae), 22 genera, 92 species, and 19 infraspecific categories were recorded. Only the genus Painteria is endemic to Mexico. Eighty-eight species are native to Mexico, and four are exotic: Acacia salicina, Neptunia prostrata, Neltuma chilensis and Albizia lebbeck. Twenty-eight species are endemic to Mexico, nine species are endemic to northeastern Mexico, and four species are endemic to only one state in Mexico. The 22 registered genera represent 44% and 65% of the generic flora of the Mimosoideae clade for Mexico and the planet, respectively, while the 92 species registered represent 3% and 18% of the species of the clade Mimosoideae for the planet and Mexico, respectively. According to the new nomenclature of legumes, the number of genera in the Mimosoideae clade in northern Mexico has increased from 19 to 24. Full article
(This article belongs to the Topic Plant Systematics and Taxonomy)
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21 pages, 2317 KiB  
Article
Genus Acacia in Mainland Portugal: Knowledge and Experience of Stakeholders in Their Management
by Maria Conceição Colaço, Ana Catarina Sequeira and Iryna Skulska
Land 2023, 12(11), 2026; https://doi.org/10.3390/land12112026 - 7 Nov 2023
Cited by 3 | Viewed by 2856
Abstract
The global rise in issues related to the invasion of alien tree species is becoming increasingly prominent. Genus Acacia is one of the most pervasive invaders among the non-native flora introduced to Portugal over the centuries. This research aimed to pinpoint the key [...] Read more.
The global rise in issues related to the invasion of alien tree species is becoming increasingly prominent. Genus Acacia is one of the most pervasive invaders among the non-native flora introduced to Portugal over the centuries. This research aimed to pinpoint the key players engaged in its management, their expertise, and the methodologies applied to control acacias or decrease affected regions. Data were gathered via an online survey and subjected to diverse statistical analyses. Numerous stakeholders have emerged in recent decades, employing various methods to fight acacia invasion. Mechanical, chemical, and combined methods are the most frequently applied. The findings highlight the need for continued funding for long-term acacia control in the same invaded areas, increased training actions and best practices demonstration in the field and increased public awareness and engagement in local communities and the general public. Full article
(This article belongs to the Section Land, Biodiversity, and Human Wellbeing)
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14 pages, 2224 KiB  
Article
Agroforestry Species Selection for Forest Rehabilitation in the Asia-Pacific Region: A Meta-Analysis on High-Level Taxonomy
by Wanjie Zhang, Kaiwen Su, Qing Wang, Li Yang, Weina Sun, Sailesh Ranjitkar, Lixin Shen, Roeland Kindt, Yuman Ji, Peter Marshall, Pak Sngoun Pisey and Yousry A. El-Kassaby
Forests 2023, 14(10), 2045; https://doi.org/10.3390/f14102045 - 12 Oct 2023
Cited by 4 | Viewed by 3363
Abstract
Agroforestry is important for forest management and rehabilitation in the southeast Asia-Pacific Region (APR), where economic issues, intensive land use, deforestation, and forest degradation are common. Species selection is a key process in establishing agroforestry systems. In this study, we reviewed the agroforestry [...] Read more.
Agroforestry is important for forest management and rehabilitation in the southeast Asia-Pacific Region (APR), where economic issues, intensive land use, deforestation, and forest degradation are common. Species selection is a key process in establishing agroforestry systems. In this study, we reviewed the agroforestry literature across eight economies within the southeast APR, documented the species used, and compared the existing systems to better understand the challenges and opportunities for the region’s agroforestry expansion. We conducted rule and Maptree analyses using 108 species, belonging to 95 genera and 49 families of plants, to unravel the various agroforestry practices in this region. We identified the most common plant families used in agroforestry combinations within each economy. We then divided the economies into three groups based on the most commonly used genera: (1) Thailand, Vietnam, Papua New Guinea and Fiji (Hevea, Oryza, Eucalyptus, Acacia, and Zea); (2) Nepal and Yunnan China (Zea, Leucaena, Morus, and Hevea); and (3) Indonesia and the Philippines (Oryza, Hevea, Zea, and Brassica). Although this study focused on high-level taxonomic classification (family and genus), we believe that this work will fill the current knowledge gaps, offering guidance to economies in the southeast APR regarding species selection and the adoption of sustainable agroforestry practices. Full article
(This article belongs to the Special Issue Ecosystem Degradation and Restoration: From Assessment to Practice)
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19 pages, 7747 KiB  
Article
Comparative Physiological, Transcriptomic, and Metabolomic Analyses of Acacia mangium Provide New Insights into Its Molecular Mechanism of Self-Incompatibility
by Ruping Zhang, Liejian Huang and Bingshan Zeng
Forests 2023, 14(10), 2034; https://doi.org/10.3390/f14102034 - 11 Oct 2023
Cited by 1 | Viewed by 1580
Abstract
Acacia mangium is well known as a valuable commercial tree species in the Acacia genus. A. mangium was recently found to be self-incompatible (SI), but its SI mechanism is not clear, which has hindered the progress of genetic improvement of A. mangium with [...] Read more.
Acacia mangium is well known as a valuable commercial tree species in the Acacia genus. A. mangium was recently found to be self-incompatible (SI), but its SI mechanism is not clear, which has hindered the progress of genetic improvement of A. mangium with strong resistance. To confirm the SI type of A. mangium, pollen germination was observed via fluorescence microscopy at 0 h, 3 h, 6 h, 9 h, 12 h, and 24 h after self-pollination. We found over ninety percent of the pollen grains produced no pollen tube growth on the stigma/style. To further explore the SI molecular mechanism of A. mangium, tests of the transcriptome and metabolome were carried out after self-pollination. Observations of pollen germination after self-pollination using fluorescence microscopy suggested that the SI type of A. mangium is gametophytic self-incompatibility (GSI). A combined transcriptomic and metabolomic analysis showed that DEGs (differentially expressed genes) related to SI (6 S-glycoproteins, 93 F-box proteins, 69 26S proteasomes, 38 calcium-dependent protein kinases/calmodulin and 41 thioredoxin genes) were significantly enriched in six KEGG (sulfur metabolism, tyrosine metabolism, phenylalanine metabolism, butanoate metabolism, and valine, leucine, and isoleucine degradation). Further analysis of these six pathways revealed the enrichment of SI-related DEGs corresponding to succinate, methylmalonate, and 3-hydroxypropane. These three metabolites were significantly downregulated. The analysis of transcripts and metabolites suggested that transcripts of SI-related gene families (thioredoxin and F-box protein) were significantly upregulated under the regulation of transcription factors (TFs) after self-pollination, leading to a decrease in metabolites (such as succinate, methylmalonate, and 3-hydroxypropionate). We also further speculated that TFs (MYB, HB-HD-ZIP, AP2/ERF-ERF, and bZIP) and gene families (thioredoxin and F-box protein) were important factors related to the SI of A. mangium. Full article
(This article belongs to the Special Issue Molecular Mechanism of Secondary Metabolic Pathways in Forest Trees)
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14 pages, 1440 KiB  
Article
Characterization of Mineral Composition and Nutritional Value of Acacia Green Pods
by Soraia I. Pedro, Carlos A. L. Antunes, Carmo Horta, Inês Pitacas, Joana Gonçalves, Jorge Gominho, Eugenia Gallardo and Ofélia Anjos
Plants 2023, 12(9), 1853; https://doi.org/10.3390/plants12091853 - 30 Apr 2023
Cited by 6 | Viewed by 3713
Abstract
The Acacia genus is considered one of the most invasive taxa in some habitats, namely coastal dunes, maritime calcareous soils, fresh lands in the valleys, mountainous areas, and the banks of watercourses and roadsides. In Portugal, the severity risk is very high, so [...] Read more.
The Acacia genus is considered one of the most invasive taxa in some habitats, namely coastal dunes, maritime calcareous soils, fresh lands in the valleys, mountainous areas, and the banks of watercourses and roadsides. In Portugal, the severity risk is very high, so this study aimed to evaluate the nutritional and mineral contents of the green pods as a potential source for livestock feeds and soil fertilizer because, as far as we know, there is no use for this species. The seven different species of Acacia (Acacia mearnsii Link, Acacia longifolia (Andrews) Willd, Acacia melanoxylon R. Br., Acacia pycnantha Bentham, Acacia dealbata Link., Acacia retinodes Schlecht, and Acacia cyclops A. Cunn. ex G. Don fil) were evaluated. The results showed that Acacia green pods have a high protein, fibre and minerals content, especially in potassium (K), calcium (Ca) and magnesium (Mg). All species present a different profile of the studied parameters, suggesting different potentials for their future use. Near-infrared spectroscopy was a potential tool to predict the earlier quality of the Acacia green pods to better select the raw material for the different applications. Full article
(This article belongs to the Special Issue Alternatives for a Sustainable Management of Invasive Plant Species)
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29 pages, 6110 KiB  
Article
Exploring More on Dictyosporiaceae: The Species Geographical Distribution and Intriguing Novel Additions from Plant Litter
by Danushka S. Tennakoon, Nimali I. de Silva, Sajeewa S. N. Maharachchikumbura, Darbhe J. Bhat, Jaturong Kumla, Nakarin Suwannarach and Saisamorn Lumyong
Diversity 2023, 15(3), 410; https://doi.org/10.3390/d15030410 - 10 Mar 2023
Cited by 16 | Viewed by 3340
Abstract
Five fungal taxa collected from plant litter in Chiang Mai province, Thailand, are described with illustrations. The maximum likelihood, maximum parsimony, and Bayesian analyses of combined loci of the internal transcribed spacer (ITS), large subunit nuclear ribosomal DNA (LSU), and translation extension factor [...] Read more.
Five fungal taxa collected from plant litter in Chiang Mai province, Thailand, are described with illustrations. The maximum likelihood, maximum parsimony, and Bayesian analyses of combined loci of the internal transcribed spacer (ITS), large subunit nuclear ribosomal DNA (LSU), and translation extension factor 1-α (tef1-α) region were used for phylogeny analyses. Dictyocheirospora acaciae is introduced as a new species from Acacia dealbata. Based on size differences in conidiomata, conidia, and DNA sequence data, it is separated from the other species in the genus. Four new host records, Dictyocheirospora garethjonesii, Di. taiwanense, Dictyosporium digitatum, and Pseudocoleophoma zingiberacearum are also reported from Bismarkia nobilis, Ficus benjamina, Cyperus aggregatus, and Hedychium spicatum, respectively. Detailed descriptions, microphotographs, and phylogenetic information were provided, and all the species were compared to similar taxa. It is noted that there is still a necessity for a collective worldwide account of the distribution of Dictyosporiaceae species. Therefore, we compiled the geographical distributions and host species associations of all the so far known Dictyosporiaceae species and discussed them here. Full article
(This article belongs to the Special Issue The Hidden Fungal Diversity in Asia 2.0)
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20 pages, 1996 KiB  
Review
Host Plant Specificity in Web-Building Spiders
by Thomas Hesselberg, Kieran M. Boyd, John D. Styrsky and Dumas Gálvez
Insects 2023, 14(3), 229; https://doi.org/10.3390/insects14030229 - 24 Feb 2023
Cited by 3 | Viewed by 4015
Abstract
Spiders are ubiquitous generalist predators playing an important role in regulating insect populations in many ecosystems. Traditionally they have not been thought to have strong influences on, or interactions with plants. However, this is slowly changing as several species of cursorial spiders have [...] Read more.
Spiders are ubiquitous generalist predators playing an important role in regulating insect populations in many ecosystems. Traditionally they have not been thought to have strong influences on, or interactions with plants. However, this is slowly changing as several species of cursorial spiders have been reported engaging in either herbivory or inhabiting only one, or a handful of related plant species. In this review paper, we focus on web-building spiders on which very little information is available. We only find well-documented evidence from studies of host plant specificity in orb spiders in the genus Eustala, which are associated with specific species of swollen thorn acacias. We review what little is known of this group in the context of spider–plant interactions generally, and focus on how these interactions are established and maintained while providing suggestions on how spiders may locate and identify specific species of plants. Finally, we suggest ideas for future fruitful research aimed at understanding how web-building spiders find and utilise specific plant hosts. Full article
(This article belongs to the Special Issue Spider Ecology and Behaviour)
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11 pages, 994 KiB  
Article
Itching for an Answer: Gall-Forming Biological Control Agent Contains an Itch Mite Species Found at Localities Known for Periodic ‘Bite Outbreaks’
by Ruan Veldtman, Eddie Ueckermann and Kayla Liebenberg
Diversity 2023, 15(1), 73; https://doi.org/10.3390/d15010073 - 6 Jan 2023
Viewed by 2605
Abstract
Biological control is an attractive option for controlling invasive plant species that are difficult to manage otherwise. However, the release of a non-native species as a biological control agent carries risks. The most obvious risk relates to impacts on plant species other than [...] Read more.
Biological control is an attractive option for controlling invasive plant species that are difficult to manage otherwise. However, the release of a non-native species as a biological control agent carries risks. The most obvious risk relates to impacts on plant species other than the plant species targeted for control. There are, however, also other risks. We report on a potential unintended impact of Dasineura dielsi, a gall-forming biological control agent that was released against Acacia cyclops in South Africa in 2003. We confirmed that the galls formed by D. dielsi on A. cyclops harbor mites in the genus Pyemotes (P. cf. ventricosus) within their gall structures, which are parasites of various insect species, but are also known to cause dermatitis in humans. Sporadic biting incidences have been reported in at least two locations in South Africa. The implications are that manual clearing of A. cyclops may expose humans to itch mites and to risks of bites. Gall-forming insects and fungi are known to create niches for herbivores and other gall-associated fauna. Although every possible food web interaction cannot be predicted, enough evidence exists to require that agent screening to include non-target risks other than those pertaining to non-host plants. Testing only whether agents are compromised by interactions with non-target plant species is not sufficient during agent evaluation. If such associations are known from the native range and therefore can form in the introduced range, then any known risk to health and socio-economic activities should be disclosed. We argue for the general development of objective assessment of such risks compared with the benefits potentially accruing from successful biological control of the target plant. Full article
(This article belongs to the Special Issue Diversity in 2022)
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22 pages, 399 KiB  
Review
Bioactive Compounds, Pharmacological Actions, and Pharmacokinetics of Genus Acacia
by Gaber El-Saber Batiha, Nosheen Akhtar, Abdulrahman A. Alsayegh, Wafaa Fouzi Abusudah, Najlaa Hamed Almohmadi, Hazem M. Shaheen, Thakur Gurjeet Singh and Michel De Waard
Molecules 2022, 27(21), 7340; https://doi.org/10.3390/molecules27217340 - 28 Oct 2022
Cited by 35 | Viewed by 7508
Abstract
Plants are a promising source of bioactive compounds that can be used to tackle many emerging diseases both infectious and non-infectious. Among different plants, Acacia is a very large genus and exhibits a diverse array of bioactive agents with remarkable pharmacological properties against [...] Read more.
Plants are a promising source of bioactive compounds that can be used to tackle many emerging diseases both infectious and non-infectious. Among different plants, Acacia is a very large genus and exhibits a diverse array of bioactive agents with remarkable pharmacological properties against different diseases. Acacia, a herb found all over the world, contains approximately more than 1200 species of the Fabaceae family. In the present review, we have collected detailed information on biochemical as well as pharmacological properties. The data were retrieved using different databases, such as Elsevier, PubMed, Science Direct, Google Scholar, and Scopus, and an extensive literature survey was carried out. Studies have shown that Acacia possesses several secondary metabolites, including amines, cyanogenic glycosides, flavonoids, alkaloids, seed oils, cyclitols, fluoroacetate, gums, non-protein amino acids, diterpenes, fatty acids, terpenes, hydrolyzable tannins, and condensed tannins. These compounds exhibit a wide range of pharmaceutical applications such as anti-inflammatory, antioxidant, antidiarrheal, antidiabetic, anticancer, antiviral, liver protective effects, and so on. Thus, the literature shows the tremendous phytochemical impact of the genus Acacia in medicine. Overall, we recommend that more research should be conducted on the medicinal value and isolation and purification of the effective therapeutic agents from Acacia species for the treatment of various ailments. Full article
19 pages, 2504 KiB  
Article
Comparative Study on Genome Size and Phytochemical Profile of Three Potential Species of Acacia: Threatened and Endemic to Saudi Arabia
by Salim Khan, Fahad Al-Qurainy, Abdulrahman Al-hashimi, Mohammad Nadeem, Mohamed Tarroum, Abdalrhaman M. Salih and Hassan O. Shaikhaldein
Horticulturae 2022, 8(11), 994; https://doi.org/10.3390/horticulturae8110994 - 26 Oct 2022
Cited by 1 | Viewed by 2782
Abstract
Acacias are widely distributed in tropical and subtropical regions of the world and have both economic as well as medicinal value. The estimation of genome size is very important as it changes due to the change in noncoding DNA sequence as well as [...] Read more.
Acacias are widely distributed in tropical and subtropical regions of the world and have both economic as well as medicinal value. The estimation of genome size is very important as it changes due to the change in noncoding DNA sequence as well as genome duplication among organisms for their evolutionary aspects. Three potential species of the genus Acacia including Acacia etbaica, Acacia johnwoodii and Acacia origena, which are threatened and nearly endemic to Saudi Arabia, were collected. The present study was carried out to determine the genome size (2C DNA contents), total phenolic content (TPC), total flavonoid (TFC) and some bioactive compounds in these species for their comparison. The genome size ranged from 1.91 pg (A. etbaica) to 2.45 pg/2C (A. origena) among the Acacia species, which correspond to genome sizes 1843.15–2364.25 Mbp, respectively. The variation was observed in genome size within Acacia species as nuclei were extracted using different extraction buffers except for GB and MB01 buffers. The FTIR analysis revealed the presence of various functional groups in compounds that might be responsible for different types of phytochemicals in these Acacia species. Total flavonoid content (TFC) ranged from 0.647 (A. origena) to 1.084 mg QE/g DW (A. etbaica), whereas the total phenolic f content (TPC) ranged between 15.322 (A. origena) to 28.849 (A. johnwoodii) mg/g DW of GAE. HPLC analysis revealed the presence of quercetin 3-β-D-glucoside and luteolin 7-rutinoside in the leaves of all three Acacia species in considerable amounts, and these might have good health-promoting effects. This is our first study on genome size (2C DNA content) using flow cytometry and phytochemical profiling on these Acacias. Thus, estimated genome size and phytochemical study of these species could help to understand the biosynthesis of secondary metabolites under various genes and the evolutionary relationships among them. Full article
(This article belongs to the Special Issue Morphology, Palynology and Phytochemicals of Medicinal Plants)
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19 pages, 4863 KiB  
Article
Impact of Training Set Configurations for Differentiating Plantation Forest Genera with Sentinel-2 Imagery and Machine Learning
by Caley Higgs and Adriaan van Niekerk
Remote Sens. 2022, 14(16), 3992; https://doi.org/10.3390/rs14163992 - 16 Aug 2022
Cited by 3 | Viewed by 2260
Abstract
Forest plantations in South Africa impose genus-specific demands on limited soil moisture. Hence, plantation composition and distribution mapping is critical for water conservation planning. Genus maps are used to quantify the impact of post-harvest genus-exchange activities in the forestry sector. Collecting genus data [...] Read more.
Forest plantations in South Africa impose genus-specific demands on limited soil moisture. Hence, plantation composition and distribution mapping is critical for water conservation planning. Genus maps are used to quantify the impact of post-harvest genus-exchange activities in the forestry sector. Collecting genus data using in situ methods is costly and time-consuming, especially when performed at regional or national scales. Although remotely sensed data and machine learning show potential for mapping genera at regional scales, the efficacy of such methods is highly dependent on the size and quality of the training data used to build the models. However, it is not known what sampling scheme (e.g., sample size, proportion per genus, and spatial distribution) is most effective to map forest genera over large and complex areas. Using Sentinel-2 imagery as inputs, this study evaluated the effects of different sampling strategies (e.g., even, uneven, and area-proportionate) for training the random forests machine learning classifier to differentiate between Acacia, Eucalyptus, and Pinus trees in South Africa. Sample size (s) was related to the number of input features (n) to better understand the potential impact of sample sparseness. The results show that an even sample with maximum size (100%, s~91n) produced the highest overall accuracy (76.3%). Although larger training set sizes (s > n) resulted in higher OAs, a saturation point was reached at s~64n. Full article
(This article belongs to the Special Issue Satellite-Based Forest Structure Mapping)
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24 pages, 7108 KiB  
Article
Gene Losses and Plastome Degradation in the Hemiparasitic Species Plicosepalus acaciae and Plicosepalus curviflorus: Comparative Analyses and Phylogenetic Relationships among Santalales Members
by Widad AL-Juhani, Noha T. Al Thagafi and Rahmah N. Al-Qthanin
Plants 2022, 11(14), 1869; https://doi.org/10.3390/plants11141869 - 18 Jul 2022
Cited by 7 | Viewed by 2437
Abstract
The Plicosepalus genus includes hemiparasitic mistletoe and belongs to the Loranthaceae family, and it has several medicinal uses. In the present study, we sequenced the complete plastomes of two species, Plicosepalus acaciae and Plicosepalus curviflorus, and compared them with the plastomes of [...] Read more.
The Plicosepalus genus includes hemiparasitic mistletoe and belongs to the Loranthaceae family, and it has several medicinal uses. In the present study, we sequenced the complete plastomes of two species, Plicosepalus acaciae and Plicosepalus curviflorus, and compared them with the plastomes of photosynthetic species (hemiparasites) and nonphotosynthetic species (holoparasites) in the order Santalales. The complete chloroplast genomes of P. acaciae and P. curviflorus are circular molecules with lengths of 120,181 bp and 121,086 bp, respectively, containing 106 and 108 genes and 63 protein-coding genes, including 25 tRNA and 4 rRNA genes for each species. We observed a reduction in the genome size of P. acaciae and P. curviflorus and the loss of certain genes, although this reduction was less than that in the hemiparasite and holoparasitic cp genomes of the Santalales order. Phylogenetic analysis supported the taxonomic state of P. acaciae and P. curviflorus as members of the family Loranthaceae and tribe Lorantheae; however, the taxonomic status of certain tribes of Loranthaceae must be reconsidered and the species that belong to it must be verified. Furthermore, available chloroplast genome data of parasitic plants could help to strengthen efforts in weed management and encourage biotechnology research to improve host resistance. Full article
(This article belongs to the Special Issue 10th Anniversary of Plants—Recent Advances and Perspectives)
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